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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Cooper, J.B."

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Search Summary

This query matches 148 Structures.

Refinements

Structure Determination Methodology

experimental (148)

Scientific Name of Source Organism

	Cryphonectria parasitica (27)
	Southampton virus (serotype 3) (22)
	Saccharomyces cerevisiae (20)
	Homo sapiens (18)
	Escherichia coli (11)
	Trypanosoma brucei (9)
	Doryteuthis pealeii (5)
	Mycobacterium tuberculosis (5)
	Priestia megaterium (5)
	Methylorubrum extorquens (4)

More...

Taxonomy

	Eukaryota (86)
	Bacteria (35)
	Riboviria (22)
	Archaea (5)
	other sequences (4)
	Eukaryota (eukaryotes) (2)

Experimental Method

	X-RAY DIFFRACTION (145)
	NEUTRON DIFFRACTION (6)

Polymer Entity Type

Protein (148)

Refinement Resolution (Å)

	0.5 - 1.0 (4)
	1.0 - 1.5 (26)
	1.5 - 2.0 (52)
	2.0 - 2.5 (41)
	2.5 - 3.0 (22)
	3.0 - 3.5 (5)
	4.0 - 4.5 (1)

Release Date

	1990 - 1994 (20)
	1995 - 1999 (4)
	2000 - 2004 (35)
	2005 - 2009 (10)
	2010 - 2014 (16)
	2015 - 2019 (38)
	2020 - 2024 (25)

Enzyme Classification Name

	Hydrolases (72)
	Transferases (32)
	Oxidoreductases (20)
	Lyases (22)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (71)
	Cyclic (49)
	Dihedral (39)

SCOP Classification

	All beta proteins (74)
	Alpha and beta proteins (a/b) (40)
	All alpha proteins (20)
	Alpha and beta proteins (a+b) (12)
	Artifacts (14)
	Multi-domain proteins (alpha and beta) (7)

AllSelected

1 to 25 of 148 Structures

Page 1 of 6

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1AW5 \| pdb_00001aw5	Download File View File

5-AMINOLEVULINATE DEHYDRATASE FROM SACCHAROMYCES CEREVISIAE

Erskine, P.T., Cooper, J.B., Wood, S.P.

(1997) Nat Struct Biol 4: 1025-1031

Released	1998-10-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	5-AMINOLEVULINATE DEHYDRATASE (protein)
Unique Ligands	ZN

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1B4E \| pdb_00001b4e	Download File View File

X-ray structure of 5-aminolevulinic acid dehydratase complexed with the inhibitor levulinic acid

Erskine, P.T., Cooper, J.B., Lewis, G., Spencer, P., Wood, S.P., Shoolingin-Jordan, P.M.

(1999) Biochemistry 38: 4266-4276

Released	1999-12-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (5-AMINOLEVULINIC ACID DEHYDRATASE) (protein)
Unique Ligands	GOL, SHF, SO4, ZN

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1B4K \| pdb_00001b4k	Download File View File

High resolution crystal structure of a MG2-dependent 5-aminolevulinic acid dehydratase

Frankenberg, N., Jahn, D., Heinz, D.W.

(1999) J Mol Biology 289: 591-602

Released	1999-07-13
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	PROTEIN (5-AMINOLEVULINIC ACID DEHYDRATASE) (protein)
Unique Ligands	MG, SHF, SO4

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1BBS \| pdb_00001bbs	Download File View File

X-RAY ANALYSES OF PEPTIDE INHIBITOR COMPLEXES DEFINE THE STRUCTURAL BASIS OF SPECIFICITY FOR HUMAN AND MOUSE RENINS

Dhanaraj, V., Blundell, T.L.

(1992) Nature 357: 466-472

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	RENIN (protein)

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1DP5 \| pdb_00001dp5	Download File View File

THE STRUCTURE OF PROTEINASE A COMPLEXED WITH A IA3 MUTANT INHIBITOR

Li, M., Phylip, H.L., Lees, W.E., Winther, J.R., Dunn, B.M., Wlodawer, A., Kay, J., Guschina, A.

(2000) Nat Struct Biol 7: 113-117

Released	2000-05-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEINASE A (protein) PROTEINASE INHIBITOR IA3 (protein)
Unique branched monosaccharides	BMA, MAN, NAG

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1DPJ \| pdb_00001dpj	Download File View File

THE STRUCTURE OF PROTEINASE A COMPLEXED WITH IA3 PEPTIDE INHIBITOR

Li, M., Phylip, H.L., Lees, W.E., Winther, J.R., Dunn, B.M., Wlodawer, A., Kay, J., Guschina, A.

(2000) Nat Struct Biol 7: 113-117

Released	2000-05-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEINASE A (protein) PROTEINASE INHIBITOR IA3 PEPTIDE (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	BMA, MAN, NAG

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1E51 \| pdb_00001e51	Download File View File

Crystal structure of native human erythrocyte 5-aminolaevulinic acid dehydratase

Mills-Davies, N.L., Thompson, D., Cooper, J.B., Shoolingin-Jordan, P.M.

To be published

Released	2001-07-12
Method	X-RAY DIFFRACTION 2.83 Å
Organisms	Homo sapiens
Macromolecule	DELTA-AMINOLEVULINIC ACID DEHYDRATASE (protein)
Unique Ligands	PBG, SO4, ZN

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1EB3 \| pdb_00001eb3	Download File View File

YEAST 5-AMINOLAEVULINIC ACID DEHYDRATASE 4,7-DIOXOSEBACIC ACID COMPLEX

Erskine, P.T., Coates, L., Newbold, R., Brindley, A.A., Stauffer, F., Wood, S.P., Warren, M.J., Cooper, J.B., Shoolingin-Jordan, P.M., Neier, R.

(2001) FEBS Lett 503: 196

Released	2001-08-02
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	5-AMINOLAEVULINIC ACID DEHYDRATASE (protein)
Unique Ligands	DSB, ZN

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1ENT \| pdb_00001ent	Download File View File

X-RAY ANALYSES OF ASPARTIC PROTEINASES. THE THREE-DIMENSIONAL STRUCTURE AT 2.1 ANGSTROMS RESOLUTION OF ENDOTHIAPEPSIN

Blundell, T.L., Dealwis, C.G.

(1990) J Mol Biology 211: 919-941

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein)
Unique Ligands	0EM, SO4

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1EPL \| pdb_00001epl	Download File View File

A STRUCTURAL COMPARISON OF 21 INHIBITOR COMPLEXES OF THE ASPARTIC PROTEINASE FROM ENDOTHIA PARASITICA

Al-Karadaghi, S., Cooper, J.B., Strop, P., Blundell, T.L.

(1994) Protein Sci 3: 2129-2143

Released	1994-12-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein) PS1, PRO-LEU-GLU-PSA-ARG-LEU (protein)

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1EPM \| pdb_00001epm	Download File View File

A STRUCTURAL COMPARISON OF 21 INHIBITOR COMPLEXES OF THE ASPARTIC PROTEINASE FROM ENDOTHIA PARASITICA

Crawford, M., Cooper, J.B., Strop, P., Blundell, T.L.

(1994) Protein Sci 3: 2129-2143

Released	1994-12-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein) PS2, THR-PHE-GLN-ALA-PSA-LEU-ARG-GLU (protein)
Unique Ligands	SO4

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1EPN \| pdb_00001epn	Download File View File

A STRUCTURAL COMPARISON OF 21 INHIBITOR COMPLEXES OF THE ASPARTIC PROTEINASE FROM ENDOTHIA PARASITICA

Crawford, M., Cooper, J.B., Blundell, T.L.

(1994) Protein Sci 3: 2129-2143

Released	1994-12-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein)
Unique Ligands	2ZS, SO4

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1EPO \| pdb_00001epo	Download File View File

ENDOTHIA ASPARTIC PROTEINASE (ENDOTHIAPEPSIN) COMPLEXED WITH CP-81,282 (MOR PHE NLE CHF NME)

Veerapandian, B., Cooper, J.B., Blundell, T.L.

(1992) Protein Sci 1: 322-328

Released	1994-12-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein)
Unique Ligands	2Z3

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1EPP \| pdb_00001epp	Download File View File

ENDOTHIA ASPARTIC PROTEINASE (ENDOTHIAPEPSIN) COMPLEXED WITH PD-130,693 (MAS PHE LYS+MTF STA MBA)

Wallace, B.A., Cooper, J.B., Blundell, T.L.

(1993) J Med Chem 36: 3809-3820

Released	1994-12-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein)
Unique Ligands	1Z1, SO4

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1EPQ \| pdb_00001epq	Download File View File

ENDOTHIA ASPARTIC PROTEINASE (ENDOTHIAPEPSIN) COMPLEXED WITH PD-133,450 (SOT PHE GLY+SCC GCL)

Dealwis, C., Cooper, J.B., Blundell, T.L.

(1993) J Med Chem 36: 3809-3820

Released	1994-12-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein)
Unique Ligands	0QF, SO4

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1EPR \| pdb_00001epr	Download File View File

ENDOTHIA ASPARTIC PROTEINASE (ENDOTHIAPEPSIN) COMPLEXED WITH PD-135,040

Badasso, M., Crawford, M., Cooper, J.B., Blundell, T.L.

(1994) Protein Sci 3: 2129-2143

Released	1994-12-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein)
Unique Ligands	0QS

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1FQ4 \| pdb_00001fq4	Download File View File

CRYSTAL STRUCTURE OF A COMPLEX BETWEEN HYDROXYETHYLENE INHIBITOR CP-108,420 AND YEAST ASPARTIC PROTEINASE A

Cronin, N.B., Badasso, M.O., Tickle, I.J., Dreyer, T., Hoover, D.J., Rosati, R.L., Humblet, C.C., Lunney, E.A., Cooper, J.B.

(2000) J Mol Biology 303: 745-760

Released	2000-09-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	SACCHAROPEPSIN (protein)
Unique Ligands	2Y2, NAG
Unique branched monosaccharides	BGC, BMA, NAG

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1FQ5 \| pdb_00001fq5	Download File View File

X-ray structure of a cyclic statine inhibitor PD-129,541 bound to yeast proteinase A

Cronin, N.B., Badasso, M.O., Tickle, I.J., Dreyer, T., Hoover, D.J., Rosati, R.L., Humblet, C.C., Lunney, E.A., Cooper, J.B.

(2000) J Mol Biology 303: 745-760

Released	2000-09-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	SACCHAROPEPSIN (protein)
Unique Ligands	0GM, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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1FQ6 \| pdb_00001fq6	Download File View File

X-RAY STRUCTURE OF GLYCOL INHIBITOR PD-133,450 BOUND TO SACCHAROPEPSIN

Cronin, N.B., Badasso, M.O., Tickle, I.J., Dreyer, T., Hoover, D.J., Rosati, R.L., Humblet, C.C., Lunney, E.A., Cooper, J.B.

(2000) J Mol Biology 303: 745-760

Released	2000-09-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	SACCHAROPEPSIN (protein)
Unique Ligands	0QF, NAG
Unique branched monosaccharides	BMA, GUP, NAG

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1FQ7 \| pdb_00001fq7	Download File View File

X-RAY STRUCTURE OF INHIBITOR CP-72,647 BOUND TO SACCHAROPEPSIN

Cronin, N.B., Badasso, M.O., Tickle, I.J., Dreyer, T., Hoover, D.J., Rosati, R.L., Humblet, C.C., Lunney, E.A., Cooper, J.B.

(2000) J Mol Biology 303: 745-760

Released	2000-09-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	SACCHAROPEPSIN (protein)
Unique Ligands	2Y3, NAG
Unique branched monosaccharides	BMA, KBG, NAG

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1FQ8 \| pdb_00001fq8	Download File View File

X-RAY STRUCTURE OF DIFLUOROSTATINE INHIBITOR CP81,198 BOUND TO SACCHAROPEPSIN

Cronin, N.B., Badasso, M.O., Tickle, I.J., Dreyer, T., Hoover, D.J., Rosati, R.L., Humblet, C.C., Lunney, E.A., Cooper, J.B.

(2000) J Mol Biology 303: 745-760

Released	2000-09-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	SACCHAROPEPSIN (protein)
Unique Ligands	2Y4, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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1GJP \| pdb_00001gjp	Download File View File

SCHIFF-BASE COMPLEX OF YEAST 5-AMINOLAEVULINIC ACID DEHYDRATASE WITH 4-OXOSEBACIC ACID

Erskine, P.T., Coates, L., Newbold, R., Brindley, A.A., Wood, S.P., Warren, M.J., Cooper, J.B., Shoolingin-Jordan, P.M., Neier, R.

(2001) FEBS Lett 503: 196

Released	2001-08-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	5-AMINOLAEVULINIC ACID DEHYDRATASE (protein)
Unique Ligands	4OX, ZN

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1GKT \| pdb_00001gkt	Download File View File

Neutron Laue diffraction structure of endothiapepsin complexed with transition state analogue inhibitor H261

Coates, L., Erskine, P.T., Wood, S.P., Myles, D.A.A., Cooper, J.B.

(2001) Biochemistry 40: 13149

Released	2001-11-20
Method	NEUTRON DIFFRACTION 2.1 Å
Organisms	Cryphonectria parasitica synthetic construct
Macromolecule	ENDOTHIAPEPSIN (protein) INHIBITOR, H261 (protein)