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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Costa, A."

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Search Summary

This query matches 118 Structures.

Refinements

Structure Determination Methodology

experimental (118)

Scientific Name of Source Organism

	Homo sapiens (72)
	Saccharomyces cerevisiae (23)
	synthetic construct (20)
	Saccharomyces cerevisiae S288C (5)
	Arabidopsis thaliana (4)
	Drosophila melanogaster (4)
	Xenopus laevis (4)
	Visna/maedi virus EV1 KV1772 (3)
	DNA molecule (2)
	Escherichia coli (2)

More...

Taxonomy

	Eukaryota (111)
	other sequences (20)
	Riboviria (5)
	Bacteria (2)
	unclassified sequences (2)
	Adnaviria (1)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (82)
	ELECTRON MICROSCOPY (36)

Polymer Entity Type

	Protein (118)
	DNA (35)

Refinement Resolution (Å)

	1.0 - 1.5 (16)
	1.5 - 2.0 (45)
	2.0 - 2.5 (9)
	2.5 - 3.0 (9)
	3.0 - 3.5 (16)
	3.5 - 4.0 (12)
	4.0 - 4.5 (7)
	> 4.5 (4)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (1)
	2010 - 2014 (6)
	2015 - 2019 (22)
	2020 - 2024 (82)
	2025 - 2029 (5)

Enzyme Classification Name

	Hydrolases (95)
	Transferases (16)
	Isomerases (1)

Symmetry Type

	Asymmetric (104)
	Cyclic (15)

SCOP Classification

	Alpha and beta proteins (a/b) (13)
	Artifacts (7)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 118 Structures

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1EIZ \| pdb_00001eiz	Download File View File

FTSJ RNA METHYLTRANSFERASE COMPLEXED WITH S-ADENOSYLMETHIONINE

Bugl, H., Fauman, E.B., Staker, B.L., Zheng, F., Kushner, S.R., Saper, M.A., Bardwell, J.C.A., Jakob, U.

(2000) Mol Cell 6: 349-360

Released	2000-08-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	FTSJ (protein)
Unique Ligands	SAM

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1EJ0 \| pdb_00001ej0	Download File View File

FTSJ RNA METHYLTRANSFERASE COMPLEXED WITH S-ADENOSYLMETHIONINE, MERCURY DERIVATIVE

Bugl, H., Fauman, E.B., Staker, B.L., Zheng, F., Kushner, S.R., Saper, M.A., Bardwell, J.C.A., Jakob, U.

(2000) Mol Cell 6: 349-360

Released	2000-08-30
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	FTSJ (protein)
Unique Ligands	HG, SAM

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3F8T \| pdb_00003f8t	Download File View File

Crystal structure analysis of a full-length MCM homolog from Methanopyrus kandleri

Bae, B., Nair, S.K.

(2009) Structure 17: 211-222

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanopyrus kandleri AV19
Macromolecule	Predicted ATPase involved in replication control, Cdc46/Mcm family (protein)

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4AU8 \| pdb_00004au8	Download File View File

Crystal structure of compound 4a in complex with cdk5, showing an unusual binding mode to the hinge region via a water molecule

Malmstrom, J., Viklund, J., Slivo, C., Costa, A., Maudet, M., Sandelin, C., Hiller, G., Olsson, L.L., Aagaard, A., Geschwindner, S., Xue, Y., Vasange, M.

(2012) Bioorg Med Chem Lett 22: 5919

Released	2013-03-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	CYCLIN-DEPENDENT KINASE 5 (protein)
Unique Ligands	IMD, SO4, Z3R

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4BXO \| pdb_00004bxo	Download File View File

Architecture and DNA recognition elements of the Fanconi anemia FANCM- FAAP24 complex

Coulthard, R., Deans, A., Swuec, P., Bowles, M., Purkiss, A., Costa, A., West, S., McDonald, N.

(2013) Structure 21: 1648

Released	2013-08-28
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	FANCONI ANEMIA GROUP M PROTEIN (protein) FANCONI ANEMIA-ASSOCIATED PROTEIN OF 24 KDA (protein) 5'-D(GPAPTPGPAPTPGPCPTPGPCP)-3' (nucleic acid) 5'-D(TPCPAPGPCPAPTPCPAPTPCP)-3' (nucleic acid)
Unique Ligands	CA

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4C8H \| pdb_00004c8h	Download File View File

Crystal structure of the C-terminal region of yeast Ctf4, selenomethionine protein.

Simon, A.C., Pellegrini, L.

(2014) Nature 510: 293

Released	2014-04-30
Method	X-RAY DIFFRACTION 2.691 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CTF4 (protein)

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4C8S \| pdb_00004c8s	Download File View File

Crystal structure of the C-terminal region of yeast Ctf4

Simon, A.C., Pellegrini, L.

(2014) Nature 510: 293

Released	2014-04-30
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA POLYMERASE ALPHA-BINDING PROTEIN (protein)

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4C93 \| pdb_00004c93	Download File View File

Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to Pol alpha.

Simon, A.C., Pellegrini, L.

(2014) Nature 510: 293

Released	2014-04-30
Method	X-RAY DIFFRACTION 2.694 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA POLYMERASE ALPHA CATALYTIC SUBUNIT A (protein) DNA POLYMERASE ALPHA-BINDING PROTEIN (protein)

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4C95 \| pdb_00004c95	Download File View File

Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to Sld5

Simon, A.C., Pellegrini, L.

(2014) Nature 510: 293

Released	2014-04-30
Method	X-RAY DIFFRACTION 2.694 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA POLYMERASE ALPHA-BINDING PROTEIN (protein) DNA REPLICATION COMPLEX GINS PROTEIN SLD5 (protein)

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4U7D \| pdb_00004u7d	Download File View File

Structure of human RECQ-like helicase in complex with an oligonucleotide

Pike, A.C.W., Zhang, Y., Schnecke, C., Cooper, C.D.O., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O., Structural Genomics Consortium (SGC)

(2015) Proc Natl Acad Sci U S A 112: 4286-4291

Released	2015-01-21
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ATP-dependent DNA helicase Q1 (protein) DNA oligonucleotide (nucleic acid)
Unique Ligands	ZN

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5C6G \| pdb_00005c6g	Download File View File

Structural Insights into the Scc2-Scc4 Cohesin Loader

Singleton, M.R., Chao, W.C.H.

(2015) Cell Rep 12: 719-725

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Eremothecium gossypii ATCC 10895
Macromolecule	AGR133Cp (protein) Sister chromatid cohesion protein 2 (protein)

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5HOG \| pdb_00005hog	Download File View File

Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to Dna2.

Simon, A.C., Pellegrini, L.

(2016) Mol Cell 63: 385-396

Released	2016-06-22
Method	X-RAY DIFFRACTION 3.092 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA polymerase alpha-binding protein (protein) Dna2p (protein)

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5HOI \| pdb_00005hoi	Download File View File

Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to Tof2.

Simon, A.C., Pellegrini, L.

(2016) Mol Cell 63: 385-396

Released	2016-06-22
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA polymerase alpha-binding protein (protein) Topoisomerase 1-associated factor 2 (protein)

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5LLJ \| pdb_00005llj	Download File View File

Maedi-Visna virus (MVV) integrase C-terminal domain (residues 220-276)

Pye, V.E., Maskell, D.P., Cherepanov, P.

(2017) Science 355: 93-95

Released	2017-01-18
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Visna/maedi virus EV1 KV1772
Macromolecule	Integrase (protein)
Unique Ligands	CL

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5M0R \| pdb_00005m0r	Download File View File

Cryo-EM reconstruction of the maedi-visna virus (MVV) strand transfer complex

Pye, V.E., Ballandras-Colas, A., Maskell, D., Locke, J., Kotecha, A., Costa, A., Cherepanov, P.

(2017) Science 355: 93-95

Released	2017-01-18
Method	ELECTRON MICROSCOPY 8.2 Å
Organisms	Visna lentivirus (strain 1514) Visna/maedi virus EV1 KV1772 synthetic construct
Macromolecule	integrase (protein) tDNA (nucleic acid) vDNA, non-transfered strand (nucleic acid) vDNA-tDNA, transferred strand, joined to a model tDNA (nucleic acid)

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5ME9 \| pdb_00005me9	Download File View File

Crystal structure of yeast Cdt1 (N terminal and middle domain), form 1.

Pye, V.E., Frigola, J., Diffley, J.F.X., Cherepanov, P.

(2017) Nat Commun 8: 15720-15720

Released	2017-05-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Cell division cycle protein CDT1 (protein)
Unique Ligands	GOL, SO4

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5MEA \| pdb_00005mea	Download File View File

Crystal structure of yeast Cdt1 (N terminal and middle domain), form 2.

Pye, V.E., Frigola, J., Diffley, J.F.X., Cherepanov, P.

(2017) Nat Commun 8: 15720-15720

Released	2017-05-17
Method	X-RAY DIFFRACTION 2.152 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Cell division cycle protein CDT1 (protein)
Unique Ligands	GOL, SO4

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5MEB \| pdb_00005meb	Download File View File

Crystal structure of yeast Cdt1 C-terminal domain

Pye, V.E., Frigola, J., Diffley, J.F.X., Cherepanov, P.

(2017) Nat Commun 8: 15720-15720

Released	2017-05-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Cell division cycle protein CDT1 (protein)
Unique Ligands	SO4

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5MEC \| pdb_00005mec	Download File View File

Crystal structure of yeast Cdt1 middle domain (residues 294-433)

Pye, V.E., Frigola, J., Diffley, J.F.X., Cherepanov, P.

(2017) Nat Commun 8: 15720-15720

Released	2017-05-17
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Cell division cycle protein CDT1 (protein)

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5NXQ \| pdb_00005nxq	Download File View File

Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to a stapled Sld5 CIP

Wu, Y., Pellegrini, L.

(2017) Angew Chem Int Ed Engl 56: 12866-12872

Released	2017-08-30
Method	X-RAY DIFFRACTION 2.413 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA polymerase alpha-binding protein (protein) MET-ASP-ILE-UA1-ILE-ASP-ASP-ILE-LEU-UA2-GLU-LEU-ASP-LYS-GLU (protein)
Unique Ligands	GOL

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5T3A \| pdb_00005t3a	Download File View File

Maedi-Visna virus (MVV) integrase CCD-CTD (residues 60-275)

Cook, N.J., Pye, V.E., Cherepanov, P.

(2017) Science 355: 93-95

Released	2017-01-18
Method	X-RAY DIFFRACTION 2.501 Å
Organisms	Visna-maedi virus
Macromolecule	integrase (protein)
Unique Ligands	ACT, MES

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6F0L \| pdb_00006f0l	Download File View File

S. cerevisiae MCM double hexamer bound to duplex DNA

Abid Ali, F., Pye, V.E., Douglas, M.E., Locke, J., Nans, A., Diffley, J.F.X., Costa, A.

(2017) Nat Commun 8: 2241-2241

Released	2017-12-06
Method	ELECTRON MICROSCOPY 4.77 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	ADP

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6HV8 \| pdb_00006hv8	Download File View File

Cryo-EM structure of S. cerevisiae Polymerase epsilon deltacat mutant

Goswami, P., Purkiss, A., Cheung, A., Costa, A.

(2018) Nat Commun 9: 5061-5061

Released	2018-12-12
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA polymerase epsilon catalytic subunit A (protein) DNA polymerase epsilon subunit B (protein)
Unique Ligands	ZN

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6HV9 \| pdb_00006hv9	Download File View File

S. cerevisiae CMG-Pol epsilon-DNA

Abid Ali, F., Purkiss, A.G., Cheung, A., Costa, A.

(2018) Nat Commun 9: 5061-5061

Released	2018-12-12
Method	ELECTRON MICROSCOPY 4.98 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 13 Unique nucleic acid chains: 3
Unique Ligands	AGS, ZN

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6R0C \| pdb_00006r0c	Download File View File

Human-D02 Nucleosome Core Particle with biotin-streptavidin label

Pye, V.E., Wilson, M.D., Cherepanov, P., Costa, A.

(2019) Nat Commun 10: 4189-4189

Released	2019-09-25
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	MN

1 to 25 of 118 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1EIZ | pdb_00001eiz

1EJ0 | pdb_00001ej0

3F8T | pdb_00003f8t

4AU8 | pdb_00004au8

4BXO | pdb_00004bxo

4C8H | pdb_00004c8h

4C8S | pdb_00004c8s

4C93 | pdb_00004c93

4C95 | pdb_00004c95

4U7D | pdb_00004u7d

5C6G | pdb_00005c6g

5HOG | pdb_00005hog

5HOI | pdb_00005hoi

5LLJ | pdb_00005llj

5M0R | pdb_00005m0r

5ME9 | pdb_00005me9

5MEA | pdb_00005mea

5MEB | pdb_00005meb

5MEC | pdb_00005mec

5NXQ | pdb_00005nxq

5T3A | pdb_00005t3a

6F0L | pdb_00006f0l

6HV8 | pdb_00006hv8

6HV9 | pdb_00006hv9

6R0C | pdb_00006r0c