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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Cox, K."

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Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Homo sapiens (23)
	Rattus norvegicus (1)

Taxonomy

Eukaryota (24)

Experimental Method

X-RAY DIFFRACTION (24)

Polymer Entity Type

Protein (24)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (22)

Release Date

	2010 - 2014 (12)
	2015 - 2019 (12)

Enzyme Classification Name

	Hydrolases (23)
	Transferases (1)

Symmetry Type

Asymmetric (24)

SCOP Classification

	All beta proteins (12)
	Alpha and beta proteins (a+b) (1)

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1 to 24 of 24 Structures

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4DJU \| pdb_00004dju	Download File View File

Structure of BACE Bound to 2-imino-3-methyl-5,5-diphenylimidazolidin-4-one

Strickland, C., Cumming, J.

(2012) Bioorg Med Chem Lett 22: 2444-2449

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	0KK, TLA

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4DJV \| pdb_00004djv	Download File View File

Structure of BACE Bound to 2-imino-5-(3'-methoxy-[1,1'-biphenyl]-3-yl)-3-methyl-5-phenylimidazolidin-4-one

Strickland, C., Cumming, J.

(2012) Bioorg Med Chem Lett 22: 2444-2449

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	0KM, TLA

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4DJW \| pdb_00004djw	Download File View File

Structure of BACE Bound to 2-imino-3-methyl-5-phenyl-5-(3-(pyridin-3-yl)phenyl)imidazolidin-4-one

Strickland, C., Cumming, J.

(2012) Bioorg Med Chem Lett 22: 2444-2449

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	0KP, TLA

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4DJX \| pdb_00004djx	Download File View File

Structure of BACE Bound to 5-(3-(5-chloropyridin-3-yl)phenyl)-5-cyclopropyl-2-imino-3-methylimidazolidin-4-one

Strickland, C., Cumming, J.

(2012) Bioorg Med Chem Lett 22: 2444-2449

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	0KQ, TLA

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4DJY \| pdb_00004djy	Download File View File

Structure of BACE Bound to (R)-5-cyclopropyl-2-imino-3-methyl-5-(3-(5-(prop-1-yn-1-yl)pyridin-3-yl)phenyl)imidazolidin-4-one

Strickland, C., Cumming, J.

(2012) Bioorg Med Chem Lett 22: 2444-2449

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	0KR, TLA

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4FRS \| pdb_00004frs	Download File View File

Structure of BACE in complex with (S)-4-(3-chloro-5-(5-(prop-1-yn-1-yl)pyridin-3-yl)thiophen-2-yl)-1,4-dimethyl-6-oxotetrahydropyrimidin-2(1H)-iminium

Orth, P.

(2012) ACS Med Chem Lett 3: 897-902

Released	2012-08-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	0V6

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4H1E \| pdb_00004h1e	Download File View File

Structure of BACE-1 Bound to (7aR)-6-benzoyl-7a-(4-(3-cyanophenyl)thiophen-2-yl)-3-methyl-4-oxohexahydro-1H-pyrrolo[3,4-d]pyrimidin-2(3H)-iminium

Orth, P.

(2012) J Med Chem 55: 9331-9345

Released	2012-10-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	10J

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4H3F \| pdb_00004h3f	Download File View File

Structure of BACE Bound to 3-(5-((7aR)-2-imino-6-(6-methoxypyridin-2-yl)-3-methyl-4-oxooctahydro-1H-pyrrolo[3,4-d]pyrimidin-7a-yl)thiophen-3-yl)benzonitrile

Strickland, C., Mandal, M.

(2012) J Med Chem 55: 9331-9345

Released	2012-11-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	10O, TLA

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4H3G \| pdb_00004h3g	Download File View File

Structure of BACE Bound to 2-((7aR)-7a-(4-(3-cyanophenyl)thiophen-2-yl)-2-imino-3-methyl-4-oxohexahydro-1H-pyrrolo[3,4-d]pyrimidin-6(2H)-yl)nicotinonitrile

Strickland, C., Mandal, M.

(2012) J Med Chem 55: 9331-9345

Released	2012-11-07
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	10Q, TLA

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4H3I \| pdb_00004h3i	Download File View File

Structure of BACE Bound to 3-(5-((7aR)-2-imino-6-(3-methoxypyridin-2-yl)-3-methyl-4-oxooctahydro-1H-pyrrolo[3,4-d]pyrimidin-7a-yl)thiophen-3-yl)benzonitrile

Strickland, C., Mandal, M.

(2012) J Med Chem 55: 9331-9345

Released	2012-11-07
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	10V, TLA

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4H3J \| pdb_00004h3j	Download File View File

Structure of BACE Bound to 2-fluoro-5-(5-(2-imino-3-methyl-4-oxo-6-phenyloctahydro-1H-pyrrolo[3,4-d]pyrimidin-7a-yl)thiophen-2-yl)benzonitrile

Strickland, C., Mandal, M.

(2012) J Med Chem 55: 9331-9345

Released	2012-10-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	10W, TLA

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4HA5 \| pdb_00004ha5	Download File View File

Structure of BACE Bound to (S)-3-(5-(2-imino-1,4-dimethyl-6-oxohexahydropyrimidin-4-yl)thiophen-3-yl)benzonitrile

Strickland, C., Mandal, M.

(2012) J Med Chem 55: 9331-9345

Released	2012-10-17
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	13W, TLA

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5HD0 \| pdb_00005hd0	Download File View File

BACE-1 in complex with (7aR)-7a-(4-(3-cyanophenyl)thiophen-2-yl)-6-(5-fluoropyrimidin-2-yl)-3-methyl-4-oxooctahydro-2H-pyrrolo[3,4-d]pyrimidin-2-iminium

Orth, P.

(2016) J Med Chem 59: 3231-3248

Released	2016-03-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	60Y, TLA

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5HDU \| pdb_00005hdu	Download File View File

BACE-1 incomplex with (7aR)-7a-(4-(3-cyanophenyl)thiophen-2-yl)-6-(5-fluoro-4-methoxypyrimidin-2-yl)-3-methyl-4-oxooctahydro-2H-pyrrolo[3,4-d]pyrimidin-2-iminium

Orth, P.

(2016) J Med Chem 59: 3231-3248

Released	2016-03-16
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	60W, TLA

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5HDV \| pdb_00005hdv	Download File View File

BACE-1 incomplex with (7aR)-7a-(5-cyanothiophen-2-yl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-3-methyl-4-oxooctahydro-2H-pyrrolo[3,4-d]pyrimidin-2-iminium

Orth, P.

(2016) J Med Chem 59: 3231-3248

Released	2016-03-16
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	60V, TLA

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5HDX \| pdb_00005hdx	Download File View File

BACE-1 in complex with (7aR)-7a-(5-cyanothiophen-2-yl)-6-(4-ethoxy-5-fluoro-6-methylpyrimidin-2-yl)-3-methyl-4-oxooctahydro-2H-pyrrolo[3,4-d]pyrimidin-2-iminium

Orth, P.

(2016) J Med Chem 59: 3231-3248

Released	2016-03-16
Method	X-RAY DIFFRACTION 1.602 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	60U

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5HDZ \| pdb_00005hdz	Download File View File

BACE-1 in complex with (7aR)-7a-(5-cyanothiophen-2-yl)-6-(5-fluoro-4-methyl-6-(methylthio)pyrimidin-2-yl)-3-methyl-4-oxooctahydro-2H-pyrrolo[3,4-d]pyrimidin-2-iminium

Orth, P.

(2016) J Med Chem 59: 3231-3248

Released	2016-03-16
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	954

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5HE4 \| pdb_00005he4	Download File View File

BACE-1 in complex with (4aR,7aS)-7a-(2,6-difluorophenyl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-3-methyl-4-oxooctahydro-2H-pyrrolo[3,4-d]pyrimidin-2-iminium

Orth, P.

(2016) J Med Chem 59: 3231-3248

Released	2016-03-16
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	60T, TLA

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5HE5 \| pdb_00005he5	Download File View File

BACE-1 in complex with (7aR)-7a-(5-cyanothiophen-2-yl)-6-(5-fluoro-4-methyl-6-(methylamino)pyrimidin-2-yl)-3-methyl-4-oxooctahydro-2H-pyrrolo[3,4-d]pyrimidin-2-iminium

Orth, P.

(2016) J Med Chem 59: 3231-3248

Released	2016-03-16
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	60S, TLA

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5HE7 \| pdb_00005he7	Download File View File

BACE-1 in complex with (4aR,7aS)-7a-(2,4-difluorophenyl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-2-imino-3-methyloctahydro-4H-pyrrolo[3,4-d]pyrimidin-4-one

Orth, P.

(2016) J Med Chem 59: 3231-3248

Released	2016-03-16
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	60X

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5HTZ \| pdb_00005htz	Download File View File

BACE1 in complex with (S)-5-(3-chloro-5-(5-(prop-1-yn-1-yl)pyridin-3-yl)thiophen-2-yl)-2,5-dimethyl-1,2,4-thiadiazinan-3-iminium 1,1-dioxide

Orth, P.

(2016) J Med Chem 59: 10435-10450

Released	2016-11-09
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	66J

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5HU0 \| pdb_00005hu0	Download File View File

BACE1 in complex with 4-(3-(furan-2-carboxamido)phenyl)-1-methyl-5-oxo-4-phenylimidazolidin-2-iminium

Orth, P.

(2016) J Med Chem 59: 10435-10450

Released	2016-11-09
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	66H, TLA

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5HU1 \| pdb_00005hu1	Download File View File

BACE1 in complex with (R)-N-(3-(3-amino-2,5-dimethyl-1,1-dioxido-5,6-dihydro-2H-1,2,4-thiadiazin-5-yl)-4-fluorophenyl)-5-fluoropicolinamide

Orth, P.

(2016) J Med Chem 59: 10435-10450

Released	2016-11-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	66F

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6DCG \| pdb_00006dcg	Download File View File

Discovery of MK-8353: An Orally Bioavailable Dual Mechanism ERK Inhibitor for Oncology

Boga, S.B., Deng, Y., Zhu, L., Nan, Y., Cooper, A., Shipps Jr., G.W., Doll, R., Shih, N., Zhu, H., Sun, R., Wang, T., Paliwal, S., Tsui, H., Gao, X., Yao, X., Desai, J., Wang, J., Alhassan, A.B., Kelly, J., Patel, M., Muppalla, K., Gudipati, S., Zhang, L., Buevich, A., Hesk, D., Carr, D., Dayananth, P., Mei, H., Cox, K., Sherborne, B., Hruza, A.W., Xiao, L., Jin, W., Long, B., Liu, G., Taylor, S.A., Kirschmeier, P., Windsor, W.T., Bishop, R., Samatar, A.A.

(2018) ACS Med Chem Lett 9: 761-767

Released	2018-08-08
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Rattus norvegicus
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	G67, SO4

1 to 24 of 24 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4DJU | pdb_00004dju

4DJV | pdb_00004djv

4DJW | pdb_00004djw

4DJX | pdb_00004djx

4DJY | pdb_00004djy

4FRS | pdb_00004frs

4H1E | pdb_00004h1e

4H3F | pdb_00004h3f

4H3G | pdb_00004h3g

4H3I | pdb_00004h3i

4H3J | pdb_00004h3j

4HA5 | pdb_00004ha5

5HD0 | pdb_00005hd0

5HDU | pdb_00005hdu

5HDV | pdb_00005hdv

5HDX | pdb_00005hdx

5HDZ | pdb_00005hdz

5HE4 | pdb_00005he4

5HE5 | pdb_00005he5

5HE7 | pdb_00005he7

5HTZ | pdb_00005htz

5HU0 | pdb_00005hu0

5HU1 | pdb_00005hu1

6DCG | pdb_00006dcg