RCSB PDB: Search

6WHN \| pdb_00006whn	Download File View File

Histone deacetylases complex with peptide macrocycles

Bera, A.K., Hosseinzadeh, P., Watson, P., Baker, D.

(2021) Nat Commun 12: 3384-3384

Released	2021-04-21
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Histone deacetylase 2 (protein) U2M-ASN-PRO-LYS-GLN-DLY-TRP-GLY peptide macrocycle (protein)
Unique Ligands	NA, NHE, PEG, PG4, PGE, ZN

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6WHO \| pdb_00006who	Download File View File

Histone deacetylases complex with peptide macrocycles

Bera, A.K., Hosseinzadeh, P., Watson, P., Baker, D.

(2021) Nat Commun 12: 3384-3384

Released	2021-04-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Histone deacetylase 2 (protein) U2M-ASN-PRO-GLU-GLN-DLY-TRP-GLY peptide macrocycle (protein)
Unique Ligands	NA, NHE, PG4, PGE, ZN

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6WHQ \| pdb_00006whq	Download File View File

Histone deacetylases complex with peptide macrocycles

Bera, A.K., Hosseinzadeh, P., Watson, P., Baker, D.

(2021) Nat Commun 12: 3384-3384

Released	2021-04-21
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Histone deacetylase 2 (protein) U2M-ASN-PRO-GLU-GLN-DLY-TRP-GLY peptide macrocycle (protein)
Unique Ligands	NA, NHE, PG4, PGE, ZN

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6WHZ \| pdb_00006whz	Download File View File

Histone deacetylases complex with peptide macrocycles

Bera, A.K., Hosseinzadeh, P., Watson, P., Baker, D.

(2021) Nat Commun 12: 3384-3384

Released	2021-04-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Histone deacetylase 2 (protein) U2M-ASN-HYP-LYS-GLN-DLY-TRP-GLY peptide macrocycle (protein)
Unique Ligands	NA, PG4, PGE, ZN

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6WI3 \| pdb_00006wi3	Download File View File

Histone deacetylases complex with peptide macrocycles

Bera, A.K., Hosseinzadeh, P., Watson, P., Baker, D.

(2021) Nat Commun 12: 3384-3384

Released	2021-04-21
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	(SHA)W(DTH)DN(DSN)(DME)(DAS)K peptide macrocycle (protein) Histone deacetylase 2 (protein)
Unique Ligands	NA, NHE, PG4, PGE, ZN

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6WSJ \| pdb_00006wsj	Download File View File

Crystal Structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with cyclopeptide des4.3.1

Watson, P.R., Christianson, D.W.

(2021) Nat Commun 12: 3384-3384

Released	2021-04-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Danio rerio synthetic construct
Macromolecule	Hdac6 protein (protein) cyclopeptide des4.3.1 (protein)
Unique Ligands	EDO, K, ZN

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7UBC \| pdb_00007ubc	Download File View File

Solution NMR structure of 9-residue Rosetta-designed cyclic peptide D9.16 in d6-DMSO with cis/trans switching

Ramelot, T.A., Tejero, R., Monteltione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D9.16 DPR-MAA-ALA-DVA-MLE-LEU-LEU-PRO-DLE (protein)

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7UBD \| pdb_00007ubd	Download File View File

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in d6-DMSO with cis/trans switching (A-CC conformation)

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D8.31 DAL-DPR-MLU-DVA-DAL-DPR-MLU-DVA (protein)

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7UBE \| pdb_00007ube	Download File View File

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in d6-DMSO with cis/trans switching

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU (protein)

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7UBF \| pdb_00007ubf	Download File View File

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in 50% d6-DMSO and 50% water with cis/trans switching (CC conformation, 50%)

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU (protein)

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7UBG \| pdb_00007ubg	Download File View File

Solution NMR structure of 9-residue Rosetta-designed cyclic peptide D9.16 in CDCl3 with cis/trans switching (A-TT conformation)

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D9.16 DPR-MAA-ALA-DVA-MLE-LEU-LEU-PRO-DLE (protein)

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7UBH \| pdb_00007ubh	Download File View File

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in CDCl3 with cis/trans switching

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D8.31 DAL-DPR-MLU-DVA-DAL-DPR-MLU-DVA (protein)

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7UBI \| pdb_00007ubi	Download File View File

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in CDCl3 with cis/trans switching (TT conformation, 47%)

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU (protein)

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7UCP \| pdb_00007ucp	Download File View File

computationally designed macrocycle

Bhardwaj, G., Baker, D., Rettie, S., Glynn, C., Sawaya, M.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	X-RAY DIFFRACTION 0.85 Å
Organisms	synthetic construct
Macromolecule	computationally designed cyclic peptide D8.3.p2 (protein)

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7UZL \| pdb_00007uzl	Download File View File

Solution NMR structure of 9-residue Rosetta-designed cyclic peptide D9.16 in CDCl3 with cis/trans switching (B-TC conformation)

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D9.16 DPR-MAA-ALA-DVA-MLE-LEU-LEU-PRO-DLE (protein)

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8CTO \| pdb_00008cto	Download File View File

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in d6-DMSO with cis/trans switching (B-CT conformation)

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D8.31 DAL-DPR-MLU-DVA-DAL-DPR-MLU-DVA (protein)

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8CUN \| pdb_00008cun	Download File View File

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in 50% d6-DMSO and 50% water with cis/trans switching (CC conformation, 50%)

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU (protein)

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8CWA \| pdb_00008cwa	Download File View File

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in CDCl3 with cis/trans switching (TC conformation, 53%)

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU (protein)

6WHN | pdb_00006whn

Histone deacetylases complex with peptide macrocycles

6WHO | pdb_00006who

Histone deacetylases complex with peptide macrocycles

6WHQ | pdb_00006whq

Histone deacetylases complex with peptide macrocycles

6WHZ | pdb_00006whz

Histone deacetylases complex with peptide macrocycles

6WI3 | pdb_00006wi3

Histone deacetylases complex with peptide macrocycles

6WSJ | pdb_00006wsj

Crystal Structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with cyclopeptide des4.3.1

7UBC | pdb_00007ubc

Solution NMR structure of 9-residue Rosetta-designed cyclic peptide D9.16 in d6-DMSO with cis/trans switching

7UBD | pdb_00007ubd

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in d6-DMSO with cis/trans switching (A-CC conformation)

7UBE | pdb_00007ube

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in d6-DMSO with cis/trans switching

7UBF | pdb_00007ubf

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in 50% d6-DMSO and 50% water with cis/trans switching (CC conformation, 50%)

7UBG | pdb_00007ubg

Solution NMR structure of 9-residue Rosetta-designed cyclic peptide D9.16 in CDCl3 with cis/trans switching (A-TT conformation)

7UBH | pdb_00007ubh

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in CDCl3 with cis/trans switching

7UBI | pdb_00007ubi

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in CDCl3 with cis/trans switching (TT conformation, 47%)

7UCP | pdb_00007ucp

computationally designed macrocycle

7UZL | pdb_00007uzl

Solution NMR structure of 9-residue Rosetta-designed cyclic peptide D9.16 in CDCl3 with cis/trans switching (B-TC conformation)

8CTO | pdb_00008cto

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in d6-DMSO with cis/trans switching (B-CT conformation)

8CUN | pdb_00008cun

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in 50% d6-DMSO and 50% water with cis/trans switching (CC conformation, 50%)

8CWA | pdb_00008cwa

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in CDCl3 with cis/trans switching (TC conformation, 53%)

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Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

6WHN | pdb_00006whn

6WHO | pdb_00006who

6WHQ | pdb_00006whq

6WHZ | pdb_00006whz

6WI3 | pdb_00006wi3

6WSJ | pdb_00006wsj

7UBC | pdb_00007ubc

7UBD | pdb_00007ubd

7UBE | pdb_00007ube

7UBF | pdb_00007ubf

7UBG | pdb_00007ubg

7UBH | pdb_00007ubh

7UBI | pdb_00007ubi

7UCP | pdb_00007ucp

7UZL | pdb_00007uzl

8CTO | pdb_00008cto

8CUN | pdb_00008cun

8CWA | pdb_00008cwa