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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Dingley, A.J."

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Search Summary

This query matches 22 Structures.

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Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Homo sapiens (4)
	Pseudomonas aeruginosa PAO1 (4)
	Escherichia coli K-12 (3)
	Acanthamoeba culbertsoni (2)
	Caenorhabditis elegans (2)
	Mus musculus (2)
	Corynebacterium pseudotuberculosis (1)
	Entamoeba histolytica (1)
	Gymnema sylvestre (1)
	Hydra (1)

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Taxonomy

	Eukaryota (14)
	Bacteria (8)

Experimental Method

	SOLUTION NMR (14)
	X-RAY DIFFRACTION (8)

Polymer Entity Type

Protein (22)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2005 - 2009 (5)
	2010 - 2014 (4)
	2015 - 2019 (4)
	2020 - 2024 (7)

Enzyme Classification Name

	Hydrolases (7)
	Transferases (2)
	Ligases (1)

Membrane Protein Annotation

OPM (3)

Symmetry Type

	Asymmetric (19)
	Cyclic (3)

SCOP Classification

	All beta proteins (3)
	Artifacts (2)
	Small proteins (2)
	All alpha proteins (1)

AllSelected

1 to 22 of 22 Structures

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1C4E \| pdb_00001c4e	Download File View File

GURMARIN FROM GYMNEMA SYLVESTRE

Fletcher, J.I., Dingley, A.J., King, G.F.

(1999) Eur J Biochem 264: 525-533

Released	1999-08-27
Method	SOLUTION NMR
Organisms	Gymnema sylvestre
Macromolecule	PROTEIN (GURMARIN) (protein)

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1OF9 \| pdb_00001of9	Download File View File

Solution structure of the pore forming toxin of entamoeba histolytica (Amoebapore A)

Hecht, O., Schleinkofer, K., Bruhn, H., Leippe, M., Van Nuland, N., Dingley, A.J., Grotzinger, J.

(2004) J Biological Chem 279: 17834

Released	2004-02-26
Method	SOLUTION NMR
Organisms	Entamoeba histolytica
Macromolecule	PORE-FORMING PEPTIDE AMEOBAPORE A (protein)

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2ARW \| pdb_00002arw	Download File View File

The solution structure of the membrane proximal cytokine receptor domain of the human interleukin-6 receptor

Hecht, O., Dingley, A.J., Schwantner, A., Ozbek, S., Rose-John, S., Grotzinger, J.

(2006) Biol Chem 387: 1255-1259

Released	2006-09-12
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Interleukin-6 receptor alpha chain (protein)

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2ERS \| pdb_00002ers	Download File View File

Solution structure of the Interleukin-15 receptor sushi domain

Lorenzen, I., Dingley, A.J., Grotzinger, J.

(2006) J Biological Chem 281: 6642-6647

Released	2006-02-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Interleukin-15 receptor alpha chain (protein)

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2JS9 \| pdb_00002js9	Download File View File

Structure of caenopore-5 (81 Pro cis conformer)

Mysliwy, J., Grotzinger, J.

(2010) Dev Comp Immunol 34: 323-330

Released	2008-10-14
Method	SOLUTION NMR
Organisms	Caenorhabditis elegans
Macromolecule	Saposin-like protein family protein 5 (protein)

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2JSA \| pdb_00002jsa	Download File View File

Solution structure of Caenopore-5 (81 Pro Trans confomer)

Mysliwy, J., Grotzinger, J.

(2010) Dev Comp Immunol 34: 323-330

Released	2008-10-14
Method	SOLUTION NMR
Organisms	Caenorhabditis elegans
Macromolecule	Saposin-like protein family protein 5 (protein)

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2K35 \| pdb_00002k35	Download File View File

Hydramacin-1: Structure and antibacterial activity of a peptide from the basal metazoan Hydra

Jung, S., Dingley, A.J., Stanisak, M., Gelhaus, C., Bosch, T., Podschun, R., Leippe, M., Gr tzinger, J.

(2009) J Biological Chem 284: 1896-1905

Released	2008-11-18
Method	SOLUTION NMR
Organisms	Hydra
Macromolecule	hydramacin-1 (protein)

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2LHT \| pdb_00002lht	Download File View File

Solution structure of Venturia inaequalis cellophane-induced 1 protein (ViCin1) domains 1 and 2

Mesarich, C.H., Schmitz, M., Tremouilhac, P., Greenwood, D.R., Mcgillivray, D.J., Templeton, M.D., Dingley, A.J.

(2012) Biochim Biophys Acta 1824: 1118-1128

Released	2012-07-18
Method	SOLUTION NMR
Organisms	Venturia inaequalis
Macromolecule	Cellophane-induced protein 1 (protein)

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2LRD \| pdb_00002lrd	Download File View File

The solution structure of the monomeric Acanthaporin

Michalek, M., Soennichsen, F.D., Wechselberger, R., Dingley, A.J., Wienk, H., Simanski, M., Herbst, R., Lorenzen, I., Marciano-Cabral, F., Gelhaus, C., Groetzinger, J., Leippe, M.

(2013) Nat Chem Biol 9: 37-42

Released	2012-05-02
Method	SOLUTION NMR
Organisms	Acanthamoeba culbertsoni
Macromolecule	Acanthaporin (protein)

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2LRE \| pdb_00002lre	Download File View File

The solution structure of the dimeric Acanthaporin

Michalek, M., Soennichsen, F.D., Wechselberger, R., Dingley, A.J., Wienk, H., Simanski, M., Herbst, R., Lorenzen, I., Marciano-Cabral, F., Gelhaus, C., Groetzinger, J., Leippe, M.

(2013) Nat Chem Biol 9: 37-42

Released	2012-05-02
Method	SOLUTION NMR
Organisms	Acanthamoeba culbertsoni
Macromolecule	Acanthaporin (protein)

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2M3O \| pdb_00002m3o	Download File View File

Structure and dynamics of a human Nedd4 WW domain-ENaC complex

Bobby, R., Medini, K., Neudecker, P., Lee, V., MacDonald, F.J., Brimble, M.A., Lott, J., Dingley, A.J.

(2013) Biochim Biophys Acta 1834: 1632-1641

Released	2013-08-28
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Amiloride-sensitive sodium channel subunit alpha (protein) E3 ubiquitin-protein ligase NEDD4 (protein)

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5AHT \| pdb_00005aht	Download File View File

Third WW domain from the E3 ubiquitin-protein ligase NEDD4

Panwalkar, V., Lecher, J., Dingley, A.

(2016) Biochemistry 55: 659

Released	2016-01-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	E3 UBIQUITIN-PROTEIN LIGASE NEDD4 (protein)

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5O6F \| pdb_00005o6f	Download File View File

NMR structure of cold shock protein A from Corynebacterium pseudotuberculosis

Caruso, I.P., Panwalkar, V., Coronado, M.A., Dingley, A.J., Cornelio, M.L., Willbold, D., Arni, R.K., Eberle, R.J.

(2018) FEBS J 285: 372-390

Released	2017-07-19
Method	SOLUTION NMR
Organisms	Corynebacterium pseudotuberculosis
Macromolecule	Cold-shock protein (protein)

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6FXF \| pdb_00006fxf	Download File View File

Crystal structure of the SAM domain of murine SLy1

Kukuk, L.K., Granzin, J., Batra-Safferling, R., Koenig, B.W.

(2019) Sci Rep 9: 54-54

Released	2019-01-30
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mus musculus
Macromolecule	SAM and SH3 domain-containing protein 3 (protein)

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6G8O \| pdb_00006g8o	Download File View File

Solution structure of the cross-linked SAM domain dimer of murine SLy1

Kukuk, L.K., Dingley, A.J., Koenig, B.W.

(2019) Sci Rep 9: 54-54

Released	2019-01-30
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	SAM and SH3 domain-containing protein 3 (protein)

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7ONK \| pdb_00007onk	Download File View File

Crystal structure of PBP3 from P. aeruginosa in complex with AIC499

Freischem, S., Grimm, I., Weiergraeber, O.H.

(2021) Biomolecules 11:

Released	2021-08-04
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Peptidoglycan D,D-transpeptidase FtsI (protein)
Unique Ligands	CL, GOL, VL5

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7ONN \| pdb_00007onn	Download File View File

Crystal structure of PBP3 transpeptidase domain from E. coli in complex with AIC499

Freischem, S., Grimm, I., Weiergraeber, O.H.

(2021) Biomolecules 11:

Released	2021-08-04
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Escherichia coli K-12
Macromolecule	Peptidoglycan D,D-transpeptidase FtsI (protein)
Unique Ligands	12P, VL5

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7ONO \| pdb_00007ono	Download File View File

Crystal structure of PBP3 transpeptidase domain from E. coli

Freischem, S., Grimm, I., Weiergraeber, O.H.

(2021) Biomolecules 11:

Released	2021-08-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	Peptidoglycan D,D-transpeptidase FtsI (protein)
Unique Ligands	TMO

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7ONW \| pdb_00007onw	Download File View File

Crystal structure of PBP3 from E. coli in complex with AIC499

Freischem, S., Grimm, I., Weiergraeber, O.H.

(2021) Biomolecules 11:

Released	2021-08-04
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Peptidoglycan D,D-transpeptidase FtsI (protein)
Unique Ligands	MPD, PO4, VL5

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7ONX \| pdb_00007onx	Download File View File

Crystal structure of PBP3 from P. aeruginosa

Freischem, S., Grimm, I., Weiergraeber, O.H.

(2021) Biomolecules 11:

Released	2021-08-04
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Peptidoglycan D,D-transpeptidase FtsI (protein)
Unique Ligands	GOL, TRS

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7ONY \| pdb_00007ony	Download File View File

Crystal structure of PBP3 from P. aeruginosa

Freischem, S., Grimm, I., Weiergraeber, O.H.

(2021) Biomolecules 11:

Released	2021-08-04
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Peptidoglycan D,D-transpeptidase FtsI (protein)
Unique Ligands	DMS, GOL, MES

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7ONZ \| pdb_00007onz	Download File View File

Crystal structure of PBP3 from P. aeruginosa

Freischem, S., Grimm, I., Weiergraeber, O.H.

(2021) Biomolecules 11:

Released	2021-08-04
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Peptidoglycan D,D-transpeptidase FtsI (protein)
Unique Ligands	GOL

1 to 22 of 22 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1C4E | pdb_00001c4e

1OF9 | pdb_00001of9

2ARW | pdb_00002arw

2ERS | pdb_00002ers

2JS9 | pdb_00002js9

2JSA | pdb_00002jsa

2K35 | pdb_00002k35

2LHT | pdb_00002lht

2LRD | pdb_00002lrd

2LRE | pdb_00002lre

2M3O | pdb_00002m3o

5AHT | pdb_00005aht

5O6F | pdb_00005o6f

6FXF | pdb_00006fxf

6G8O | pdb_00006g8o

7ONK | pdb_00007onk

7ONN | pdb_00007onn

7ONO | pdb_00007ono

7ONW | pdb_00007onw

7ONX | pdb_00007onx

7ONY | pdb_00007ony

7ONZ | pdb_00007onz