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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Dwivedi, P."

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Search Summary

This query matches 32 Structures.

Refinements

Structure Determination Methodology

experimental (32)

Scientific Name of Source Organism

	Escherichia coli (12)
	Pyrococcus furiosus (8)
	Homo sapiens (6)
	Escherichia coli K-12 (4)
	Faba bean necrotic yellows virus (1)
	Moritella marina (1)
	Rattus norvegicus (1)

Taxonomy

	Bacteria (17)
	Archaea (8)
	Eukaryota (6)
	Eukaryota (eukaryotes) (1)
	Monodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (32)

Polymer Entity Type

	Protein (32)
	DNA (9)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (9)
	2.5 - 3.0 (11)
	3.0 - 3.5 (5)

Release Date

	2000 - 2004 (10)
	2005 - 2009 (9)
	2010 - 2014 (5)
	2015 - 2019 (1)
	2020 - 2024 (7)

Enzyme Classification Name

	Hydrolases (7)
	Transferases (4)
	Ligases (1)

Symmetry Type

	Asymmetric (22)
	Cyclic (10)

SCOP Classification

	Alpha and beta proteins (a/b) (6)
	All beta proteins (2)
	Alpha and beta proteins (a+b) (5)
	Coiled coil proteins (1)
	Artifacts (1)

AllSelected

1 to 25 of 32 Structures

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1E9R \| pdb_00001e9r	Download File View File

Bacterial conjugative coupling protein TrwBdeltaN70. Trigonal form in complex with sulphate.

Gomis-Rueth, F.X., Moncalian, G., Cabezon, E., de la Cruz, F., Coll, M.

(2001) Nature 409: 637

Released	2001-02-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	CONJUGAL TRANSFER PROTEIN TRWB (protein)
Unique Ligands	SO4

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1E9S \| pdb_00001e9s	Download File View File

Bacterial conjugative coupling protein TrwBdeltaN70. Unbound monoclinic form.

Gomis-Rueth, F.X., Moncalian, G., Cabezon, E., de la Cruz, F., Coll, M.

(2001) Nature 409: 637

Released	2001-02-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	CONJUGAL TRANSFER PROTEIN TRWB (protein)

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1GKI \| pdb_00001gki	Download File View File

Plasmid coupling protein TrwB in complex with ADP and Mg2+.

Gomis-Ruth, F.X., Moncalian, G., De La cruz, F., Coll, M.

(2001) Nature 409: 637

Released	2002-05-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	CONJUGAL TRANSFER PROTEIN TRWB (protein)
Unique Ligands	ADP, EPE, MG

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1GL6 \| pdb_00001gl6	Download File View File

Plasmid coupling protein TrwB in complex with the non-hydrolysable GTP analogue GDPNP

Gomis-Ruth, F.X., Moncalian, G., De La cruz, F., Coll, M.

(2001) Nature 409: 637

Released	2002-05-16
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	ATPASE (protein)
Unique Ligands	CL, EPE, GNP

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1GL7 \| pdb_00001gl7	Download File View File

Plasmid coupling protein TrwB in complex with the non-hydrolisable ATP-analogue ADPNP.

Gomis-Ruth, F.X., Moncalian, G., De La cruz, F., Coll, M.

(2001) Nature 409: 637

Released	2002-05-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	CONJUGAL TRANSFER PROTEIN TRWB (protein)
Unique Ligands	ANP, CL

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1L8D \| pdb_00001l8d	Download File View File

Rad50 coiled-coil Zn hook

Hopfner, K.P., Tainer, J.A.

(2002) Nature 418: 562-566

Released	2002-08-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA double-strand break repair rad50 ATPase (protein)
Unique Ligands	CIT, HG, PO4

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1OMH \| pdb_00001omh	Download File View File

Conjugative Relaxase TrwC in complex with OriT Dna. Metal-free structure.

Guasch, A., Lucas, M., Moncalian, G., Cabezas, M., Perez-Luque, R., Gomis-Ruth, F.X., de la Cruz, F., Coll, M.

(2003) Nat Struct Biol 10: 1002-1010

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	trwC protein (protein) DNA OLIGONUCLEOTIDE (nucleic acid)
Unique Ligands	SO4

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1OSB \| pdb_00001osb	Download File View File

Conjugative Relaxase TrwC in complex with OriT Dna. Metal-free structure.

Guasch, A., Lucas, M., Moncalian, G., Cabezas, M., Perez-Luque, R., Gomis-Ruth, F.X., de la Cruz, F., Coll, M.

(2003) Nat Struct Biol 10: 1002-1010

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Escherichia coli
Macromolecule	TrwC protein (protein) Dna oligonucleotide (nucleic acid)
Unique Ligands	SO4

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1QX0 \| pdb_00001qx0	Download File View File

CONJUGATIVE RELAXASE TRWC IN COMPLEX WITH ORIT DNA. METAL-BOUND STRUCTURE

Guasch, A., Lucas, M., Moncalian, G., Cabezas, M., Prez-Luque, R., Gomis-Rth, F.X., de la Cruz, F., Coll, M.

(2003) Nat Struct Biol 10: 1002-1010

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Escherichia coli
Macromolecule	trwC protein (protein) DNA OLIGONUCLEOTIDE (nucleic acid)
Unique Ligands	SO4, ZN

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1US8 \| pdb_00001us8	Download File View File

The Rad50 signature motif: essential to ATP binding and biological function

Moncalian, G., Lengsfeld, B., Bhaskara, V., Hopfner, K.P., Karcher, A., Alden, E., Tainer, J.A., Paull, T.T.

(2004) J Mol Biology 335: 937

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE (protein)

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2AK5 \| pdb_00002ak5	Download File View File

beta PIX-SH3 complexed with a Cbl-b peptide

Jozic, D., Cardenes, N., Deribe, Y.L., Moncalian, G., Hoeller, D., Groemping, Y., Dikic, I., Rittinger, K., Bravo, J.

(2005) Nat Struct Mol Biol 12: 972-979

Released	2005-10-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	8-residue peptide from a signal transduction protein CBL-B (protein) Rho guanine nucleotide exchange factor 7 (protein)

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2BZ8 \| pdb_00002bz8	Download File View File

N-terminal Sh3 domain of CIN85 bound to Cbl-b peptide

Cardenes, N., Moncalian, G., Bravo, J.

(2005) Nat Struct Mol Biol 12: 972

Released	2005-10-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	SH3-DOMAIN KINASE BINDING PROTEIN 1 (protein) SIGNAL TRANSDUCTION PROTEIN CBL-B SH3-BINDING PROTEIN CBL-B, RING FINGER PROTEIN 56, CBL-B (protein)
Unique Ligands	NA

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2CDM \| pdb_00002cdm	Download File View File

The structure of TrwC complexed with a 27-mer DNA comprising the recognition hairpin and the cleavage site

Boer, R., Russi, S., Guasch, A., Lucas, M., Blanco, A.G., Perez-Luque, R., Coll, M., de la Cruz, F.

(2006) J Mol Biology 358: 857

Released	2006-07-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	TRWC (protein) 5'-D(GPCPGPCPAPCPCPGPAPAP APGPGPTPGPCPGPTPAPTPTPGPTPCPTPAP*T)-3' (nucleic acid)
Unique Ligands	SO4

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2J6F \| pdb_00002j6f	Download File View File

N-TERMINAL SH3 DOMAIN OF CMS (CD2AP HUMAN HOMOLOG) BOUND TO CBL-B PEPTIDE

Moncalian, G., Cardenes, N., Deribe, Y.L., Spinola-Amilibia, M., Dikic, I., Bravo, J.

(2006) J Biological Chem 281: 38845

Released	2006-10-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	CD2-ASSOCIATED PROTEIN (protein) E3 UBIQUITIN-PROTEIN LIGASE CBL-B (protein)

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2J6K \| pdb_00002j6k	Download File View File

N-TERMINAL SH3 DOMAIN OF CMS (CD2AP HUMAN HOMOLOG)

Moncalian, G., Cardenes, N., Deribe, Y.L., Spinola-Amilibia, M., Dikic, I., Bravo, J.

(2006) J Biological Chem 281: 38845

Released	2006-10-11
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Homo sapiens
Macromolecule	CD2-ASSOCIATED PROTEIN (protein)
Unique Ligands	NA

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2J6O \| pdb_00002j6o	Download File View File

ATYPICAL POLYPROLINE RECOGNITION BY THE CMS N-TERMINAL SH3 DOMAIN. CMS:CD2 HETEROTRIMER

Moncalian, G., Cardenes, N., Deribe, Y.L., Spinola-Amilibia, M., Dikic, I., Bravo, J.

(2006) J Biological Chem 281: 38845

Released	2006-10-11
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Homo sapiens
Macromolecule	CD2-ASSOCIATED PROTEIN (protein) T-CELL SURFACE ANTIGEN CD2 (protein)

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2J7I \| pdb_00002j7i	Download File View File

ATYPICAL POLYPROLINE RECOGNITION BY THE CMS N-TERMINAL SH3 DOMAIN. CMS:CD2 HETERODIMER

Moncalian, G., Cardenes, N., Deribe, Y.L., Spinola-Amilibia, M., Dikic, I., Bravo, J.

(2006) J Biological Chem 281: 38845

Released	2006-11-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	CD2-ASSOCIATED PROTEIN (protein) T-CELL SURFACE ANTIGEN CD2 (protein)

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3DSC \| pdb_00003dsc	Download File View File

Crystal structure of P. furiosus Mre11 DNA synaptic complex

Williams, R.S., Moncalian, G., Shin, D.S., Tainer, J.A.

(2008) Cell 135: 97-109

Released	2008-10-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA double-strand break repair protein mre11 (protein) DNA (5'-D(PDCPDAPDCPDAPDAPDGPDCPDTPDTPDTPDTPDGPDCPDTPDTPDGPDTPDGPDAPDC)-3') (nucleic acid)

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3DSD \| pdb_00003dsd	Download File View File

Crystal structure of P. furiosus Mre11-H85S bound to a branched DNA and manganese

Williams, R.S., Moiani, D., Tainer, J.A.

(2008) Cell 135: 97-109

Released	2008-10-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA double-strand break repair protein mre11 (protein) DNA (5'-D(DCPDGPDCPDGPDCPDAPDCPDAPDAPDGPDCPDTPDTPDTPDTPDGPDCPDTPDTPDGPDTPDGPDGPDAPDTPDA)-3') (nucleic acid)
Unique Ligands	MN

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3QKR \| pdb_00003qkr	Download File View File

Mre11 Rad50 binding domain bound to Rad50

Williams, G.J., Williams, R.S., Arvai, A., Moncalian, G., Tainer, J.A.

(2011) Nat Struct Mol Biol 18: 423-431

Released	2011-03-30
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA double-strand break repair protein mre11 (protein) DNA double-strand break repair rad50 ATPase (protein)
Unique Ligands	PO4

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3QKS \| pdb_00003qks	Download File View File

Mre11 Rad50 binding domain bound to Rad50

Williams, G.J., Williams, R.S., Arvai, A., Moncalian, G., Tainer, J.A.

(2011) Nat Struct Mol Biol 18: 423-431

Released	2011-03-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA double-strand break repair protein mre11 (protein) DNA double-strand break repair rad50 ATPase (protein)

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3QKT \| pdb_00003qkt	Download File View File

Rad50 ABC-ATPase with adjacent coiled-coil region in complex with AMP-PNP

Williams, G.J., Williams, R.S., Arvai, A., Moncalian, G., Tainer, J.A.

(2011) Nat Struct Mol Biol 18: 423-431

Released	2011-03-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA double-strand break repair rad50 ATPase (protein)
Unique Ligands	ANP, MG

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3QKU \| pdb_00003qku	Download File View File

Mre11 Rad50 binding domain in complex with Rad50 and AMP-PNP

Williams, G.J., Williams, R.S., Arvai, A., Moncalian, G., Tainer, J.A.

(2011) Nat Struct Mol Biol 18: 423-431

Released	2011-03-30
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA double-strand break repair protein mre11 (protein) DNA double-strand break repair rad50 ATPase (protein)
Unique Ligands	ANP, MG

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4PCB \| pdb_00004pcb	Download File View File

Conjugative Relaxase TrwC in complex with mutant OriT Dna

Moncalian, G., Carballeira, J.D., de la Cruz, F., Gonzalez-Perez, B.

(2014) Nucleic Acids Res 42: 10632-10643

Released	2014-09-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	TrwC (protein) DNA 5'-D(PGPCPAPCPCPGPAPAPGPGPTPGPCPGPTPAPTPTPCPTPTPGP - 3') (nucleic acid)
Unique Ligands	PO4

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6H8O \| pdb_00006h8o	Download File View File

Crystal structure of the Master-Rep protein nuclease domain from the Faba Bean Necrotic Yellows Virus

Moncalian, G., Gonzalez-Montes, L.

To be published

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Faba bean necrotic yellows virus
Macromolecule	Replication-associated protein (protein)
Unique Ligands	SO4

1 to 25 of 32 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1E9R | pdb_00001e9r

1E9S | pdb_00001e9s

1GKI | pdb_00001gki

1GL6 | pdb_00001gl6

1GL7 | pdb_00001gl7

1L8D | pdb_00001l8d

1OMH | pdb_00001omh

1OSB | pdb_00001osb

1QX0 | pdb_00001qx0

1US8 | pdb_00001us8

2AK5 | pdb_00002ak5

2BZ8 | pdb_00002bz8

2CDM | pdb_00002cdm

2J6F | pdb_00002j6f

2J6K | pdb_00002j6k

2J6O | pdb_00002j6o

2J7I | pdb_00002j7i

3DSC | pdb_00003dsc

3DSD | pdb_00003dsd

3QKR | pdb_00003qkr

3QKS | pdb_00003qks

3QKT | pdb_00003qkt

3QKU | pdb_00003qku

4PCB | pdb_00004pcb

6H8O | pdb_00006h8o