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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Garcia, A."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Homo sapiens (7)
	Escherichia coli K-12 (2)
	Stichodactyla helianthus (1)
	Streptococcus pneumoniae R6 (1)

Taxonomy

	Eukaryota (8)
	Bacteria (3)

Experimental Method

	X-RAY DIFFRACTION (10)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (4)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (1)
	2020 - 2024 (7)

Enzyme Classification Name

Hydrolases (3)

Symmetry Type

Asymmetric (11)

SCOP Classification

All alpha proteins (2)

AllSelected

1 to 11 of 11 Structures

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2JF4 \| pdb_00002jf4	Download File View File

Family 37 trehalase from Escherichia coli in complex with validoxylamine

Gibson, R.P., Gloster, T.M., Roberts, S., Warren, R.A.J., Storch De Gracia, I., Garcia, A., Chiara, J.L., Davies, G.J.

(2007) Angew Chem Int Ed Engl 46: 4115

Released	2007-02-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli K-12
Macromolecule	PERIPLASMIC TREHALASE (protein)
Unique Ligands	VDM

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2JG0 \| pdb_00002jg0	Download File View File

Family 37 trehalase from Escherichia coli in complex with 1- thiatrehazolin

Gibson, R.P., Gloster, T.M., Roberts, S., Warren, R.A.J., Storch De Gracia, I., Garcia, A., Chiara, J.L., Davies, G.J.

(2007) Angew Chem Int Ed Engl 46: 4115

Released	2007-02-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli K-12
Macromolecule	PERIPLASMIC TREHALASE (protein)
Unique Ligands	TTZ

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2K9E \| pdb_00002k9e	Download File View File

NMR Solution Structure for ShK-192: A Potent KV1.3-Specific Immunosuppressive Polypeptide

Galea, C.A.

(2009) Mol Pharmacol 75: 762-773

Released	2009-01-20
Method	SOLUTION NMR
Organisms	Stichodactyla helianthus
Macromolecule	Kappa-stichotoxin-She3a (protein)

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2WW5 \| pdb_00002ww5	Download File View File

3D-structure of the modular autolysin LytC from Streptococcus pneumoniae at 1.6 A resolution

Perez-Dorado, I., Sanles, R., Hermoso, J.A., Gonzalez, A., Garcia, A., Garcia, P., Garcia, J.L., Menendez, M.

(2010) Nat Struct Mol Biol 17: 576

Released	2010-04-21
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Streptococcus pneumoniae R6
Macromolecule	1,4-BETA-N-ACETYLMURAMIDASE (protein)
Unique Ligands	CHT, CL, GOL

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8SVG \| pdb_00008svg	Download File View File

Ubiquitin variant i53 in complex with 53BP1 Tudor domain

Holden, J.K., Partridge, J.R., Wibowo, A.S., Mulichak, A.

(2024) Nat Commun 15: 2625-2625

Released	2024-03-27
Method	X-RAY DIFFRACTION 1.21 Å
Organisms	Homo sapiens
Macromolecule	Tumor protein p53 binding protein 1 (protein) Ubiquitin variant i53 (protein)

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8SVH \| pdb_00008svh	Download File View File

Ubiquitin variant i53 mutant L67R bound to 53BP1 Tudor Domain

Holden, J.K., Partridge, J.R., Wibowo, A.S., Mulichak, A.

(2024) Nat Commun 15: 2625-2625

Released	2024-03-27
Method	X-RAY DIFFRACTION 1.16 Å
Organisms	Homo sapiens
Macromolecule	Tumor protein p53 binding protein 1 (protein) Ubiquitin variant i53: mutant L67R (protein)

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8SVI \| pdb_00008svi	Download File View File

Ubiquitin variant i53:Mutant L67H with 53BP1 Tudor domain

Partridge, J.R., Holden, J.K., Wibowo, A.S., Mulichak, A.

(2024) Nat Commun 15: 2625-2625

Released	2024-03-27
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	Tumor protein p53 binding protein 1 (protein) Ubiquitin Variant i53: Mutant L67H (protein)
Unique Ligands	GOL

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8SVJ \| pdb_00008svj	Download File View File

Ubiquitin variant i53: mutant VHH with 53BP1 Tudor domain

Holden, J., Partridge, J.R., Wibowo, A.S., Mulichak, A.

(2024) Nat Commun 15: 2625-2625

Released	2024-03-27
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Tumor protein p53 binding protein 1 (protein) Ubiquitin varient i53 mutant VHH (protein)
Unique Ligands	GOL

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8T2D \| pdb_00008t2d	Download File View File

Ubiquitin variant i53:Mutant T12Y.T14E.L67R with 53BP1 Tudor domain

Partridge, J.R., Holden, J.K., Wibowo, A.S., Mulichak, A.

(2024) Nat Commun 15: 2625-2625

Released	2024-03-27
Method	X-RAY DIFFRACTION 1.751 Å
Organisms	Homo sapiens
Macromolecule	Tumor protein p53 binding protein 1 (protein) Ubiquitin variant i53 (protein)

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8TBB \| pdb_00008tbb	Download File View File

F9S, novel TIM-3 targeting antibody, bound to IgV domain of TIM-3

Oganesyan, V., van Dyk, N., Mazor, Y., Yang, C.

To be published

Released	2024-08-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	F9S Fab heavy chain (protein) F9S Fab light chain (protein) T-cell immunoglobulin mucin receptor 3 (protein)
Unique Ligands	NAG

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8TFT \| pdb_00008tft	Download File View File

Fab of O13-1 human IgG1 antibody bound to IgV domain of human TIM-3

Oganesyan, V.Y., van Dyk, N., Mazor, Y., Yang, C.

To be published

Released	2024-08-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	O-13-1 IgG1 Fab heavy chain (protein) O-13-1 IgG1 Fab light chain (protein) T-cell immunoglobulin mucin receptor 3 (protein)
Unique Ligands	NAG

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2JF4 | pdb_00002jf4

Family 37 trehalase from Escherichia coli in complex with validoxylamine

2JG0 | pdb_00002jg0

Family 37 trehalase from Escherichia coli in complex with 1- thiatrehazolin

2K9E | pdb_00002k9e

NMR Solution Structure for ShK-192: A Potent KV1.3-Specific Immunosuppressive Polypeptide

2WW5 | pdb_00002ww5

3D-structure of the modular autolysin LytC from Streptococcus pneumoniae at 1.6 A resolution

8SVG | pdb_00008svg

Ubiquitin variant i53 in complex with 53BP1 Tudor domain

8SVH | pdb_00008svh

Ubiquitin variant i53 mutant L67R bound to 53BP1 Tudor Domain

8SVI | pdb_00008svi

Ubiquitin variant i53:Mutant L67H with 53BP1 Tudor domain

8SVJ | pdb_00008svj

Ubiquitin variant i53: mutant VHH with 53BP1 Tudor domain

8T2D | pdb_00008t2d

Ubiquitin variant i53:Mutant T12Y.T14E.L67R with 53BP1 Tudor domain

8TBB | pdb_00008tbb

F9S, novel TIM-3 targeting antibody, bound to IgV domain of TIM-3

8TFT | pdb_00008tft

Fab of O13-1 human IgG1 antibody bound to IgV domain of human TIM-3

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2JF4 | pdb_00002jf4

2JG0 | pdb_00002jg0

2K9E | pdb_00002k9e

2WW5 | pdb_00002ww5

8SVG | pdb_00008svg

8SVH | pdb_00008svh

8SVI | pdb_00008svi

8SVJ | pdb_00008svj

8T2D | pdb_00008t2d

8TBB | pdb_00008tbb

8TFT | pdb_00008tft