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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ge, L."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Homo sapiens (8)
	synthetic construct (2)
	Mus musculus (1)
	Rattus norvegicus (1)

Taxonomy

	Eukaryota (9)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (1)
	2.0 - 2.5 (2)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)

Release Date

2020 - 2024 (9)

Enzyme Classification Name

	Hydrolases (1)
	Transferases (1)

Symmetry Type

Asymmetric (9)

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1 to 9 of 9 Structures

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7RE7 \| pdb_00007re7	Download File View File

TCR mimic antibody (Fab fragment) in complex with AFP/HLA-A*02

Dasgupta, M., Baker, B.M.

(2022) Sci Rep 12: 12068-12068

Released	2022-07-27
Method	X-RAY DIFFRACTION 2.547 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Fab heavy chain (protein) Fab light chain (protein) MHC class I antigen (protein) PHE-MET-ASN-LYS-PHE-ILE-TYR-GLU-ILE (protein)
Unique Ligands	1PE, EPE, FMT, GOL, P6G, PG4, PGE

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7RE8 \| pdb_00007re8	Download File View File

Class I MHC (HLA-A*02) presenting alpha fetoprotein peptide (AFP)

Dasgupta, M., Baker, B.M.

(2022) Sci Rep 12: 12068-12068

Released	2022-07-27
Method	X-RAY DIFFRACTION 2.82 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) MHC class I antigen, A-2 alpha chain (protein) PHE-MET-ASN-LYS-PHE-ILE-TYR-GLU-ILE (protein)
Unique Ligands	1PE, PEG, PGE

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7RE9 \| pdb_00007re9	Download File View File

TCR mimic antibody (Fab fragment)

Dasgupta, M., Baker, B.M.

(2022) Sci Rep 12: 12068-12068

Released	2022-07-27
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Homo sapiens
Macromolecule	Fab heavy chain (protein) Fab light chain (protein)
Unique Ligands	PEG

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7ROV \| pdb_00007rov	Download File View File

KRAS G12D Mutant in complex with GMPPCP and cyclic peptide MP-9903

Orth, P.

(2021) Chem Sci 12: 15975-15987

Released	2021-09-22
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Cyclic peptide MP-9903 (protein) Isoform 2B of GTPase KRas (protein)
Unique Ligands	GCP, GOL, MG

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7TB1 \| pdb_00007tb1	Download File View File

Crystal structure of STUB1 with a macrocyclic peptide

Bahmanjah, S., Klein, D.J.

(2022) J Med Chem

Released	2022-07-27
Method	X-RAY DIFFRACTION 1.785 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ALA-CYS-SER-SER-ILE-TRP-CYS-PRO-ASP-GLY (protein) E3 ubiquitin-protein ligase CHIP (protein)
Unique Ligands	I1J

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7WFY \| pdb_00007wfy	Download File View File

Crystal Structure of the VAV2 SH2 domain in complex with APP phosphorylated peptide

Zhang, Y.J., Liu, Y.R., Wu, B.

(2022) Sci Rep 12: 12752-12752

Released	2022-12-07
Method	X-RAY DIFFRACTION 2.449 Å
Organisms	Homo sapiens
Macromolecule	Amyloid beta A4 protein-binding family B member 1 (protein) (protein) Guanine nucleotide exchange factor VAV2 (protein)

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7YIR \| pdb_00007yir	Download File View File

Crystal structure of N-terminal PH domain of ARAP3 protein from human

Zhang, Y.J., Liu, Y.R., Wu, B.

(2023) Int J Mol Sci 24:

Released	2023-05-03
Method	X-RAY DIFFRACTION 2.099 Å
Organisms	Homo sapiens
Macromolecule	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 (protein)
Unique Ligands	PEG

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7YIS \| pdb_00007yis	Download File View File

Crystal structure of N-terminal PH domain of ARAP3 protein in complex with inositol 1,3,4,5-tetrakisphosphate

Zhang, Y.J., Liu, Y.R., Wu, B.

(2023) Int J Mol Sci 24:

Released	2023-05-03
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 (protein)
Unique Ligands	4PT

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8I3E \| pdb_00008i3e	Download File View File

Crystal structure of ELKS1 in complex with Piccolo

Cai, Q., Zhang, M.

(2024) Cell 187: 2175-2193.e21

Released	2024-01-24
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	ELKS/Rab6-interacting/CAST family member 1 (protein) MKIAA0559 protein (protein)

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

7RE7 | pdb_00007re7

TCR mimic antibody (Fab fragment) in complex with AFP/HLA-A*02

7RE8 | pdb_00007re8

Class I MHC (HLA-A*02) presenting alpha fetoprotein peptide (AFP)

7RE9 | pdb_00007re9

TCR mimic antibody (Fab fragment)

7ROV | pdb_00007rov

KRAS G12D Mutant in complex with GMPPCP and cyclic peptide MP-9903

7TB1 | pdb_00007tb1

Crystal structure of STUB1 with a macrocyclic peptide

7WFY | pdb_00007wfy

Crystal Structure of the VAV2 SH2 domain in complex with APP phosphorylated peptide

7YIR | pdb_00007yir

Crystal structure of N-terminal PH domain of ARAP3 protein from human

7YIS | pdb_00007yis

Crystal structure of N-terminal PH domain of ARAP3 protein in complex with inositol 1,3,4,5-tetrakisphosphate

8I3E | pdb_00008i3e

Crystal structure of ELKS1 in complex with Piccolo

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

7RE7 | pdb_00007re7

7RE8 | pdb_00007re8

7RE9 | pdb_00007re9

7ROV | pdb_00007rov

7TB1 | pdb_00007tb1

7WFY | pdb_00007wfy

7YIR | pdb_00007yir

7YIS | pdb_00007yis

8I3E | pdb_00008i3e