RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Gomis-Rueth, F.X."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Astacus astacus (6)
	Homo sapiens (3)
	Streptococcus agalactiae (3)
	Escherichia coli (2)
	Lophonetta specularioides (2)
	Crotalus adamanteus (1)
	Porphyromonas gingivalis (1)
	Staphylococcus aureus subsp. aureus N315 (1)

Taxonomy

	Eukaryota (12)
	Bacteria (7)

Experimental Method

X-RAY DIFFRACTION (19)

Polymer Entity Type

	Protein (19)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (7)
	2.0 - 2.5 (5)
	2.5 - 3.0 (6)

Release Date

	1990 - 1994 (7)
	1995 - 1999 (2)
	2000 - 2004 (7)
	2005 - 2009 (2)
	2015 - 2019 (1)

Enzyme Classification Name

Hydrolases (13)

Symmetry Type

	Asymmetric (11)
	Cyclic (8)

SCOP Classification

	Alpha and beta proteins (a/b) (6)
	All alpha proteins (4)
	Alpha and beta proteins (a+b) (10)
	All beta proteins (2)

AllSelected

1 to 19 of 19 Structures

Page 1 of 1

Sort by

Explore in 3D

1AST \| pdb_00001ast	Download File View File

STRUCTURE OF ASTACIN AND IMPLICATIONS FOR ACTIVATION OF ASTACINS AND ZINC-LIGATION OF COLLAGENASES

Bode, W., Gomis-Rueth, F.X., Stoecker, W.

(1992) Nature 358: 164-167

Released	1994-07-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Astacus astacus
Macromolecule	ASTACIN (protein)
Unique Ligands	ZN

Explore in 3D

1B01 \| pdb_00001b01	Download File View File

TRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEX

Gomis-Rueth, F.X., Sola, M., Acebo, P., Parraga, A., Guasch, A., Eritja, R., Gonzalez, A., Espinosa, M., del Solar, G., Coll, M.

(1998) EMBO J 17: 7404-7415

Released	1999-11-19
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Streptococcus agalactiae
Macromolecule	TRANSCRIPTIONAL REPRESSOR COPG (protein) DNA (5'-D(CPCPCPGPTPGPCPAPCPTPCPAPAPTPGPCPAPAPT)-3') (nucleic acid) DNA (5'-D(GPAPTPTPGPCPAPTPTPGPAPGPTPGPCPAPCPGPG)-3') (nucleic acid)

Explore in 3D

1DYT \| pdb_00001dyt	Download File View File

X-ray crystal structure of ECP (RNase 3) at 1.75 A

Mallorqui-Fernandez, G., Pous, J., Peracaula, R., Maeda, T., Tada, H., Yamada, H., Seno, M., De Llorens, R., Gomis-Rueth, F.X., Coll, M.

(2000) J Mol Biology 300: 1297

Released	2001-02-08
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	EOSINOPHIL CATIONIC PROTEIN (protein)
Unique Ligands	CIT, FE

Explore in 3D

1E9R \| pdb_00001e9r	Download File View File

Bacterial conjugative coupling protein TrwBdeltaN70. Trigonal form in complex with sulphate.

Gomis-Rueth, F.X., Moncalian, G., Cabezon, E., de la Cruz, F., Coll, M.

(2001) Nature 409: 637

Released	2001-02-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	CONJUGAL TRANSFER PROTEIN TRWB (protein)
Unique Ligands	SO4

Explore in 3D

1E9S \| pdb_00001e9s	Download File View File

Bacterial conjugative coupling protein TrwBdeltaN70. Unbound monoclinic form.

Gomis-Rueth, F.X., Moncalian, G., Cabezon, E., de la Cruz, F., Coll, M.

(2001) Nature 409: 637

Released	2001-02-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	CONJUGAL TRANSFER PROTEIN TRWB (protein)

Explore in 3D

1EA4 \| pdb_00001ea4	Download File View File

TRANSCRIPTIONAL REPRESSOR COPG/22bp dsDNA COMPLEX

Gomis-Rueth, F.X., Costa, M., Sola, M., Acebo, P., Eritja, R., Espinosa, M., Solar, G.D., Coll, M.

(2001) J Mol Biology 310: 403

Released	2001-07-05
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Streptococcus agalactiae
Macromolecule	TRANSCRIPTIONAL REPRESSOR COPG (protein) DNA (5'-D(TPAPAPCPCPGPTPGP CPAPCPTPCPAPAPTPGPCPAPAPTPC)-3') (nucleic acid) DNA(5'-D(APGPAPTPTPGPCPAPTP TPGPAPGPTPGPCPAPCPGPGPTPT)-3') (nucleic acid)

Explore in 3D

1H8L \| pdb_00001h8l	Download File View File

Duck Carboxypeptidase D Domain II in complex with GEMSA

Gomis-Rueth, F.X., Coll, M., Aviles, F.X., Vendrell, J., Fricker, L.D.

(2001) J Biological Chem 276: 16177-16184

Released	2002-02-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Lophonetta specularioides
Macromolecule	CARBOXYPEPTIDASE GP180 RESIDUES 503-882 (protein)
Unique Ligands	GEM, NAG, SO4, ZN
Unique branched monosaccharides	BMA, NAG

Explore in 3D

1IAA \| pdb_00001iaa	Download File View File

CRYSTAL STRUCTURES, SPECTROSCOPIC FEATURES, AND CATALYTIC PROPERTIES OF COBALT(II), COPPER(II), NICKEL(II), AND MERCURY(II) DERIVATIVES OF THE ZINC ENDOPEPTIDASE ASTACIN. A CORRELATION OF STRUCTURE AND PROTEOLYTIC ACTIVITY

Gomis-Rueth, F.-X., Stoecker, W., Bode, W.

(1994) J Biological Chem 269: 17111-17117

Released	1994-08-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Astacus astacus
Macromolecule	ASTACIN (protein)
Unique Ligands	CU

Explore in 3D

1IAB \| pdb_00001iab	Download File View File

CRYSTAL STRUCTURES, SPECTROSCOPIC FEATURES, AND CATALYTIC PROPERTIES OF COBALT(II), COPPER(II), NICKEL(II), AND MERCURY(II) DERIVATIVES OF THE ZINC ENDOPEPTIDASE ASTACIN. A CORRELATION OF STRUCTURE AND PROTEOLYTIC ACTIVITY

Gomis-Rueth, F.-X., Stoecker, W., Bode, W.

(1994) J Biological Chem 269: 17111-17117

Released	1994-08-31
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Astacus astacus
Macromolecule	ASTACIN (protein)
Unique Ligands	CO

Explore in 3D

1IAC \| pdb_00001iac	Download File View File

REFINED 1.8 ANGSTROMS X-RAY CRYSTAL STRUCTURE OF ASTACIN, A ZINC-ENDOPEPTIDASE FROM THE CRAYFISH ASTACUS ASTACUS L. STRUCTURE DETERMINATION, REFINEMENT, MOLECULAR STRUCTURE AND COMPARISON WITH THERMOLYSIN

Gomis-Rueth, F.-X., Stoecker, W., Bode, W.

(1993) J Mol Biology 229: 945-968

Released	1994-08-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Astacus astacus
Macromolecule	ASTACIN (protein)
Unique Ligands	HG

Explore in 3D

1IAD \| pdb_00001iad	Download File View File

REFINED 1.8 ANGSTROMS X-RAY CRYSTAL STRUCTURE OF ASTACIN, A ZINC-ENDOPEPTIDASE FROM THE CRAYFISH ASTACUS ASTACUS L. STRUCTURE DETERMINATION, REFINEMENT, MOLECULAR STRUCTURE AND COMPARISON TO THERMOLYSIN

Gomis-Rueth, F.-X., Stoecker, W., Bode, W.

(1993) J Mol Biology 229: 945-968

Released	1994-08-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Astacus astacus
Macromolecule	ASTACIN (protein)

Explore in 3D

1IAE \| pdb_00001iae	Download File View File

CRYSTAL STRUCTURES, SPECTROSCOPIC FEATURES, AND CATALYTIC PROPERTIES OF COBALT(II), COPPER(II), NICKEL(II), AND MERCURY(II) DERIVATIVES OF THE ZINC ENDOPEPTIDASE ASTACIN. A CORRELATION OF STRUCTURE AND PROTEOLYTIC ACTIVITY

Grams, F., Stoecker, W., Bode, W.

(1994) J Biological Chem 269: 17111-17117

Released	1994-08-31
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Astacus astacus
Macromolecule	ASTACIN (protein)
Unique Ligands	NI

Explore in 3D

1IAG \| pdb_00001iag	Download File View File

FIRST STRUCTURE OF A SNAKE VENOM METALLOPROTEINASE: A PROTOTYPE FOR MATRIX METALLOPROTEINASES(SLASH)COLLAGENASES

Gomis-Rueth, F.-X., Bode, W.

(1993) EMBO J 12: 4151-4157

Released	1994-08-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Crotalus adamanteus
Macromolecule	ADAMALYSIN II (protein)
Unique Ligands	CA, SO4, ZN

Explore in 3D

1QMU \| pdb_00001qmu	Download File View File

Duck carboxypeptidase D domain II

Gomis-Rueth, F.X., Coll, M., Aviles, F.X., Vendrell, J., Fricker, L.D.

(1999) EMBO J 18: 5817

Released	2000-10-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Lophonetta specularioides
Macromolecule	CARBOXYPEPTIDASE GP180 RESIDUES 503-882 (protein)
Unique Ligands	SO4, ZN
Unique branched monosaccharides	MAN, NAG

Explore in 3D

1SAX \| pdb_00001sax	Download File View File

Three-dimensional structure of s.aureus methicillin-resistance regulating transcriptional repressor meci in complex with 25-bp ds-DNA

Garcia-Castellanos, R., Mallorqui-Fernandez, G., Marrero, A., Potempa, J., Coll, M., Gomis-Ruth, F.X.

(2004) J Biological Chem 279: 17888-17896

Released	2004-04-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Staphylococcus aureus subsp. aureus N315
Macromolecule	Methicillin resistance regulatory protein mecI (protein) 5'-d(CAAAATTACAACTGTAATATCGGAG)-3' (nucleic acid) 5'-d(GCTCCGATATTACAGTTGTAATTTT)-3' (nucleic acid)
Unique Ligands	K

Explore in 3D

2BO9 \| pdb_00002bo9	Download File View File

Human carboxypeptidase A4 in complex with human latexin.

Pallares, I., Bonet, R., Garcia-Castellanos, R., Ventura, S., Aviles, F.X., Vendrell, J., Gomis-Rueth, F.X.

(2005) Proc Natl Acad Sci U S A 102: 3978

Released	2005-04-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	CARBOXYPEPTIDASE A4 (protein) HUMAN LATEXIN (protein)
Unique Ligands	ACN, MPD, NAG, VAL, ZN

Explore in 3D

2BOA \| pdb_00002boa	Download File View File

Human procarboxypeptidase A4.

Garcia-Castellanos, R., Bonet-Figueredo, R., Pallares, I., Ventura, S., Aviles, F.X., Vendrell, J., Gomis-Ruth, F.X.

(2005) Cell Mol Life Sci 62: 1996

Released	2005-12-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	CARBOXYPEPTIDASE A4 (protein)
Unique Ligands	GOL, NAG, ZN
Unique branched monosaccharides	NAG

Explore in 3D

2CPG \| pdb_00002cpg	Download File View File

TRANSCRIPTIONAL REPRESSOR COPG

Gomis-Rueth, F.X., Sola, M., Acebo, P., Parraga, A., Guasch, A., Eritja, R., Gonzalez, A., Espinosa, M., del Solar, G., Coll, M.

(1998) EMBO J 17: 7404-7415

Released	1999-11-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptococcus agalactiae
Macromolecule	TRANSCRIPTIONAL REPRESSOR COPG (protein)
Unique Ligands	CL

Explore in 3D

6I9A \| pdb_00006i9a	Download File View File

Porphyromonas gingivalis gingipain K (Kgp) in complex with inhibitor KYT-36

Gomis-Ruth, F.X., Guevara, T., Rofdriguez-Banqueri, A.

(2019) Sci Rep 9: 4935-4935

Released	2019-03-13
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Porphyromonas gingivalis
Macromolecule	Lys-gingipain W83 (protein)
Unique Ligands	CA, DTV, EPE, GOL, H8E, NA, UNX

1 to 19 of 19 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1AST | pdb_00001ast

STRUCTURE OF ASTACIN AND IMPLICATIONS FOR ACTIVATION OF ASTACINS AND ZINC-LIGATION OF COLLAGENASES

1B01 | pdb_00001b01

TRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEX

1DYT | pdb_00001dyt

X-ray crystal structure of ECP (RNase 3) at 1.75 A

1E9R | pdb_00001e9r

Bacterial conjugative coupling protein TrwBdeltaN70. Trigonal form in complex with sulphate.

1E9S | pdb_00001e9s

Bacterial conjugative coupling protein TrwBdeltaN70. Unbound monoclinic form.

1EA4 | pdb_00001ea4

TRANSCRIPTIONAL REPRESSOR COPG/22bp dsDNA COMPLEX

1H8L | pdb_00001h8l

Duck Carboxypeptidase D Domain II in complex with GEMSA

1IAA | pdb_00001iaa

CRYSTAL STRUCTURES, SPECTROSCOPIC FEATURES, AND CATALYTIC PROPERTIES OF COBALT(II), COPPER(II), NICKEL(II), AND MERCURY(II) DERIVATIVES OF THE ZINC ENDOPEPTIDASE ASTACIN. A CORRELATION OF STRUCTURE AND PROTEOLYTIC ACTIVITY

1IAB | pdb_00001iab

CRYSTAL STRUCTURES, SPECTROSCOPIC FEATURES, AND CATALYTIC PROPERTIES OF COBALT(II), COPPER(II), NICKEL(II), AND MERCURY(II) DERIVATIVES OF THE ZINC ENDOPEPTIDASE ASTACIN. A CORRELATION OF STRUCTURE AND PROTEOLYTIC ACTIVITY

1IAC | pdb_00001iac

REFINED 1.8 ANGSTROMS X-RAY CRYSTAL STRUCTURE OF ASTACIN, A ZINC-ENDOPEPTIDASE FROM THE CRAYFISH ASTACUS ASTACUS L. STRUCTURE DETERMINATION, REFINEMENT, MOLECULAR STRUCTURE AND COMPARISON WITH THERMOLYSIN

1IAD | pdb_00001iad

REFINED 1.8 ANGSTROMS X-RAY CRYSTAL STRUCTURE OF ASTACIN, A ZINC-ENDOPEPTIDASE FROM THE CRAYFISH ASTACUS ASTACUS L. STRUCTURE DETERMINATION, REFINEMENT, MOLECULAR STRUCTURE AND COMPARISON TO THERMOLYSIN

1IAE | pdb_00001iae

CRYSTAL STRUCTURES, SPECTROSCOPIC FEATURES, AND CATALYTIC PROPERTIES OF COBALT(II), COPPER(II), NICKEL(II), AND MERCURY(II) DERIVATIVES OF THE ZINC ENDOPEPTIDASE ASTACIN. A CORRELATION OF STRUCTURE AND PROTEOLYTIC ACTIVITY

1IAG | pdb_00001iag

FIRST STRUCTURE OF A SNAKE VENOM METALLOPROTEINASE: A PROTOTYPE FOR MATRIX METALLOPROTEINASES(SLASH)COLLAGENASES

1QMU | pdb_00001qmu

Duck carboxypeptidase D domain II

1SAX | pdb_00001sax

Three-dimensional structure of s.aureus methicillin-resistance regulating transcriptional repressor meci in complex with 25-bp ds-DNA

2BO9 | pdb_00002bo9

Human carboxypeptidase A4 in complex with human latexin.

2BOA | pdb_00002boa

Human procarboxypeptidase A4.

2CPG | pdb_00002cpg

TRANSCRIPTIONAL REPRESSOR COPG

6I9A | pdb_00006i9a

Porphyromonas gingivalis gingipain K (Kgp) in complex with inhibitor KYT-36

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1AST | pdb_00001ast

1B01 | pdb_00001b01

1DYT | pdb_00001dyt

1E9R | pdb_00001e9r

1E9S | pdb_00001e9s

1EA4 | pdb_00001ea4

1H8L | pdb_00001h8l

1IAA | pdb_00001iaa

1IAB | pdb_00001iab

1IAC | pdb_00001iac

1IAD | pdb_00001iad

1IAE | pdb_00001iae

1IAG | pdb_00001iag

1QMU | pdb_00001qmu

1SAX | pdb_00001sax

2BO9 | pdb_00002bo9

2BOA | pdb_00002boa

2CPG | pdb_00002cpg

6I9A | pdb_00006i9a