RCSB PDB: Search

4D6N \| pdb_00004d6n	Download File View File

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 10 DAYS INCUBATION IN 5MM MG (STATE 7)

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

(2015) Nat Struct Mol Biol 22: 65

Released	2014-12-17
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Desulfurococcus mucosus synthetic construct
Macromolecule	HOMING ENDONUCLEASE I-DMOI (protein) 5'-D(DCPCPGPGPCPAPAPGPGPCP)-3' (nucleic acid) 5'-D(DCPGPCPGPCPCPGPGPAPAPCPTPTPDAPC)-3' (nucleic acid) 5'-D(DGPCPCPTPTPGPCPCPGPGPGPTPAPDAP)-3' (nucleic acid) 5'-D(DGPTPTPCPCPGPGPCPGPCPGP)-3' (nucleic acid)
Unique Ligands	ACT, MG

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4D6O \| pdb_00004d6o	Download File View File

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 1H INCUBATION IN 5MM MG (STATE 2)

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

(2015) Nat Struct Mol Biol 22: 65

Released	2014-12-17
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Desulfurococcus mucosus synthetic construct
Macromolecule	HOMING ENDONUCLEASE I-DMOI (protein) 25MER (nucleic acid)
Unique Ligands	ACT, MG

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4LVI \| pdb_00004lvi	Download File View File

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt). Mn-bound crystal structure at pH 4.6

Pluta, R., Boer, D.R., Coll, M.

(2017) Proc Natl Acad Sci U S A 114: E6526-E6535

Released	2014-09-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptococcus agalactiae
Macromolecule	Plasmid recombination enzyme (protein) ACTTTAT oligonucleotide (nucleic acid) ATAAAGTATAGTGTG oligonucleotide (nucleic acid)
Unique Ligands	GOL, MN

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4LVJ \| pdb_00004lvj	Download File View File

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt). Mn-bound crystal structure at pH 5.5

Pluta, R., Boer, D.R., Coll, M.

(2017) Proc Natl Acad Sci U S A 114: E6526-E6535

Released	2014-09-24
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Streptococcus agalactiae
Macromolecule	Plasmid recombination enzyme (protein) ACTTTAT oligonucleotide (nucleic acid) ATAAAGTATAGTGTG oligonucleotide (nucleic acid)
Unique Ligands	ACT, MN

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4LVK \| pdb_00004lvk	Download File View File

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt+3'Phosphate). Mn-bound crystal structure at pH 4.6

Pluta, R., Boer, D.R., Coll, M.

(2017) Proc Natl Acad Sci U S A 114: E6526-E6535

Released	2014-09-24
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Streptococcus agalactiae
Macromolecule	Plasmid recombination enzyme (protein) ACTTTAT oligonucleotide (nucleic acid) ATAAAGTATAGTGTGpo oligonucleotide (nucleic acid)
Unique Ligands	MN, NA

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4LVL \| pdb_00004lvl	Download File View File

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt+3'Thiophosphate). Mn-bound crystal structure at pH 6.8

Pluta, R., Boer, D.R., Coll, M.

(2017) Proc Natl Acad Sci U S A 114: E6526-E6535

Released	2014-09-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptococcus agalactiae synthetic construct
Macromolecule	Plasmid recombination enzyme (protein) DNA (5'-D(APCPTPTPTPAPT)-3') (nucleic acid) DNA (5'-D(APTPAPAPAPGPTPAPTPAPGPTPGPTPGP*(TS6))-3') (nucleic acid)
Unique Ligands	CL, MN

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4LVM \| pdb_00004lvm	Download File View File

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (23nt). Mn-bound crystal structure at pH 6.5

Pluta, R., Boer, D.R., Coll, M.

(2017) Proc Natl Acad Sci U S A 114: E6526-E6535

Released	2014-09-24
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Streptococcus agalactiae
Macromolecule	Plasmid recombination enzyme (protein) ACTTTAT oligonucleotide (nucleic acid) ATAAAGTATAGTGTGT oligonucleotide (nucleic acid)
Unique Ligands	CL, MG, MN, NA

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4UN7 \| pdb_00004un7	Download File View File

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA BEFORE INCUBATION IN 5MM MN (STATE 1)

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

(2015) Nat Struct Mol Biol 22: 65

Released	2014-12-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Desulfurococcus mucosus synthetic construct
Macromolecule	HOMING ENDONUCLEASE I-DMOI (protein) 25MER (nucleic acid)
Unique Ligands	ZN

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4UN8 \| pdb_00004un8	Download File View File

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 1H INCUBATION IN 5MM MN (STATE 2)

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

(2015) Nat Struct Mol Biol 22: 65

Released	2014-12-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Desulfurococcus mucosus synthetic construct
Macromolecule	HOMING ENDONUCLEASE I-DMOI (protein) 25MER (nucleic acid)
Unique Ligands	MN

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4UN9 \| pdb_00004un9	Download File View File

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 8H INCUBATION IN 5MM MN (STATE 3)

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

(2015) Nat Struct Mol Biol 22: 65

Released	2015-01-14
Method	X-RAY DIFFRACTION 2.734 Å
Organisms	Desulfurococcus mucosus synthetic construct
Macromolecule	HOMING ENDONUCLEASE I-DMOI (protein) 25MER (nucleic acid)
Unique Ligands	MN

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4UNA \| pdb_00004una	Download File View File

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 2 DAYS INCUBATION IN 5MM MN (STATE 4)

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

(2015) Nat Struct Mol Biol 22: 65

Released	2014-12-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Desulfurococcus mucosus synthetic construct
Macromolecule	HOMING ENDONUCLEASE I-DMOI (protein) 25MER (nucleic acid) 5'-D(CPCPGPGPCPAPAPGPGPC)-3' (nucleic acid) 5'-D(CPGPCPGPCPCPGPGPAPAPCPTPTPAP*C)-3' (nucleic acid)
Unique Ligands	MN

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4UNB \| pdb_00004unb	Download File View File

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 6 DAYS INCUBATION IN 5MM MN (STATE 5)

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

(2015) Nat Struct Mol Biol 22: 65

Released	2014-12-17
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Desulfurococcus mucosus synthetic construct
Macromolecule	HOMING ENDONUCLEASE I-DMOI (protein) 5'-D(CPCPGPGPCPAPAPGPGPC)-3' (nucleic acid) 5'-D(CPGPCPGPCPCPGPGPAPAPCPTPTPAPC)-3' (nucleic acid) 5'-D(GPCPCPTPTPGPCPCPGPGPGPTPAPA)-3' (nucleic acid) 5'-D(GPTPTPCPCPGPGPCPGPCPG)-3' (nucleic acid)
Unique Ligands	MN

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4UNC \| pdb_00004unc	Download File View File

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 8 DAYS INCUBATION IN 5MM MN (STATE 6)

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

(2015) Nat Struct Mol Biol 22: 65

Released	2014-12-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Desulfurococcus mucosus synthetic construct
Macromolecule	HOMING ENDONUCLEASE I-DMOI (protein) 5'-D(CPCPGPGPCPAPAPGPGPC)-3' (nucleic acid) 5'-D(CPGPCPGPCPCPGPGPAPAPCPTPTPAPC)-3' (nucleic acid) 5'-D(GPCPCPTPTPGPCPCPGPGPGPTPAPA)-3' (nucleic acid) 5'-D(GPTPTPCPCPGPGPCPGPCPG)-3' (nucleic acid)
Unique Ligands	MN

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4UT0 \| pdb_00004ut0	Download File View File

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 10 DAYS INCUBATION IN 5MM MN (STATE 7)

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

(2015) Nat Struct Mol Biol 22: 65

Released	2014-12-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Desulfurococcus mucosus synthetic construct
Macromolecule	HOMING ENDONUCLEASE I-DMOI (protein) 5'-D(CPCPGPGPCPAPAPGPGPCP)-3' (nucleic acid) 5'-D(CPGPCPGPCPCPGPGPAPAPCPTPTPAPCP)-3' (nucleic acid) 5'-D(GPCPCPTPTPGPCPCPGPGPGPTPAPAP)-3' (nucleic acid) 5'-D(GPTPTPCPCPGPGPCPGPCPGP)-3' (nucleic acid)
Unique Ligands	ACT, MN

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4Y6N \| pdb_00004y6n	Download File View File

Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis in complex with Mn2+, uridine-diphosphate-glucose (UDP-Glc) and phosphoglyceric acid (PGA) - GpgS Mn2+ UDP-Glc PGA-1

Albesa-Jove, D., Rodrigo-Unzueta, A., Cifuente, J.O., Urresti, S., Comino, N., Sancho-Vaello, E., Guerin, M.E.

(2015) Angew Chem Int Ed Engl 54: 9898-9902

Released	2015-07-15
Method	X-RAY DIFFRACTION 2.348 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Glucosyl-3-phosphoglycerate synthase (protein)
Unique Ligands	3PG, EDO, MN, UPG

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4Y6U \| pdb_00004y6u	Download File View File

Mycobacterial protein

Albesa-Jove, D., Rodrigo-Unzueta, A., Cifuente, J.O., Urresti, S., Comino, N., Sancho-Vaello, E., Guerin, M.E.

(2015) Angew Chem Int Ed Engl 54: 9898-9902

Released	2015-07-15
Method	X-RAY DIFFRACTION 2.271 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Glucosyl-3-phosphoglycerate synthase (protein)
Unique Ligands	3PG, CL, EDO, MN, UPG

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4Y7F \| pdb_00004y7f	Download File View File

Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis in complex with Mn2+, uridine-diphosphate-glucose (UDP-Glc) and 3-(phosphonooxy)propanoic acid (PPA) - GpgS Mn2+ UDP-Glc PPA

Albesa-Jove, D., Rodrigo-Unzueta, A., Cifuente, J.O., Urresti, S., Comino, N., Sancho-Vaello, E., Guerin, M.E.

(2015) Angew Chem Int Ed Engl 54: 9898-9902

Released	2015-07-15
Method	X-RAY DIFFRACTION 3.231 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Glucosyl-3-phosphoglycerate synthase (protein)
Unique Ligands	48X, EDO, MN, SO4, UPG

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4Y7G \| pdb_00004y7g	Download File View File

Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis in complex with Mn2+, uridine-diphosphate-glucose (UDP-Glc) and glycerol 3-phosphate (G3P) - GpgS Mn2+ UDP-Glc G3P

Albesa-Jove, D., Rodrigo-Unzueta, A., Cifuente, J.O., Urresti, S., Comino, N., Sancho-Vaello, E., Guerin, M.E.

(2015) Angew Chem Int Ed Engl 54: 9898-9902

Released	2015-07-15
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Glucosyl-3-phosphoglycerate synthase (protein)
Unique Ligands	G3P, MN, UPG

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4Y9X \| pdb_00004y9x	Download File View File

Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis in complex with Mn2+, uridine-diphosphate-glucose (UDP-Glc) and phosphoglyceric acid (PGA) - GpgS Mn2+ UDP-Glc PGA-3

Albesa-Jove, D., Rodrigo-Unzueta, A., Cifuente, J.O., Urresti, S., Comino, N., Sancho-Vaello, E., Guerin, M.E.

(2015) Angew Chem Int Ed Engl 54: 9898-9902

Released	2015-07-15
Method	X-RAY DIFFRACTION 2.637 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Glucosyl-3-phosphoglycerate synthase (protein)
Unique Ligands	3PG, CL, EDO, MN, UPG

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5N2Q \| pdb_00005n2q	Download File View File

MobM Relaxase Domain (MOBV; Mob_Pre) bound to 26nt pMV158 oriT DNA

Russi, S., Boer, D.R., Coll, M.

(2017) Proc Natl Acad Sci U S A 114: E6526-E6535

Released	2017-04-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Plasmid pMV158 Streptococcus agalactiae
Macromolecule	Plasmid recombination enzyme (protein) DNA (26-MER) (nucleic acid)
Unique Ligands	CL, GOL, MG, NA

4D6N | pdb_00004d6n

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 10 DAYS INCUBATION IN 5MM MG (STATE 7)

4D6O | pdb_00004d6o

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 1H INCUBATION IN 5MM MG (STATE 2)

4LVI | pdb_00004lvi

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt). Mn-bound crystal structure at pH 4.6

4LVJ | pdb_00004lvj

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt). Mn-bound crystal structure at pH 5.5

4LVK | pdb_00004lvk

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt+3'Phosphate). Mn-bound crystal structure at pH 4.6

4LVL | pdb_00004lvl

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt+3'Thiophosphate). Mn-bound crystal structure at pH 6.8

4LVM | pdb_00004lvm

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (23nt). Mn-bound crystal structure at pH 6.5

4UN7 | pdb_00004un7

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA BEFORE INCUBATION IN 5MM MN (STATE 1)

4UN8 | pdb_00004un8

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 1H INCUBATION IN 5MM MN (STATE 2)

4UN9 | pdb_00004un9

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 8H INCUBATION IN 5MM MN (STATE 3)

4UNA | pdb_00004una

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 2 DAYS INCUBATION IN 5MM MN (STATE 4)

4UNB | pdb_00004unb

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 6 DAYS INCUBATION IN 5MM MN (STATE 5)

4UNC | pdb_00004unc

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 8 DAYS INCUBATION IN 5MM MN (STATE 6)

4UT0 | pdb_00004ut0

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 10 DAYS INCUBATION IN 5MM MN (STATE 7)

4Y6N | pdb_00004y6n

Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis in complex with Mn2+, uridine-diphosphate-glucose (UDP-Glc) and phosphoglyceric acid (PGA) - GpgS Mn2+ UDP-Glc PGA-1

4Y6U | pdb_00004y6u

Mycobacterial protein

4Y7F | pdb_00004y7f

Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis in complex with Mn2+, uridine-diphosphate-glucose (UDP-Glc) and 3-(phosphonooxy)propanoic acid (PPA) - GpgS Mn2+ UDP-Glc PPA

4Y7G | pdb_00004y7g

Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis in complex with Mn2+, uridine-diphosphate-glucose (UDP-Glc) and glycerol 3-phosphate (G3P) - GpgS Mn2+ UDP-Glc G3P

4Y9X | pdb_00004y9x

Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis in complex with Mn2+, uridine-diphosphate-glucose (UDP-Glc) and phosphoglyceric acid (PGA) - GpgS Mn2+ UDP-Glc PGA-3

5N2Q | pdb_00005n2q

MobM Relaxase Domain (MOBV; Mob_Pre) bound to 26nt pMV158 oriT DNA

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Scientific Name of Source Organism

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Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

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Enzyme Classification Name

Symmetry Type

4D6N | pdb_00004d6n

4D6O | pdb_00004d6o

4LVI | pdb_00004lvi

4LVJ | pdb_00004lvj

4LVK | pdb_00004lvk

4LVL | pdb_00004lvl

4LVM | pdb_00004lvm

4UN7 | pdb_00004un7

4UN8 | pdb_00004un8

4UN9 | pdb_00004un9

4UNA | pdb_00004una

4UNB | pdb_00004unb

4UNC | pdb_00004unc

4UT0 | pdb_00004ut0

4Y6N | pdb_00004y6n

4Y6U | pdb_00004y6u

4Y7F | pdb_00004y7f

4Y7G | pdb_00004y7g

4Y9X | pdb_00004y9x

5N2Q | pdb_00005n2q