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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Goulas, T."

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Search Summary

This query matches 48 Structures.

Refinements

Structure Determination Methodology

experimental (48)

Scientific Name of Source Organism

	Homo sapiens (13)
	Tannerella forsythia (10)
	Bacteroides fragilis (6)
	Escherichia coli K-12 (5)
	Porphyromonas gingivalis W83 (5)
	Porphyromonas gingivalis (3)
	Astacus astacus (2)
	Bacillus cereus biovar anthracis str. CI (2)
	Mus musculus (2)
	Tannerella forsythia 92A2 (2)

More...

Taxonomy

	Bacteria (34)
	Eukaryota (15)

Experimental Method

	X-RAY DIFFRACTION (39)
	ELECTRON MICROSCOPY (9)

Polymer Entity Type

Protein (48)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (16)
	2.0 - 2.5 (7)
	2.5 - 3.0 (7)
	3.0 - 3.5 (4)
	3.5 - 4.0 (2)
	4.0 - 4.5 (2)
	> 4.5 (6)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (24)
	2020 - 2024 (23)

Enzyme Classification Name

Hydrolases (13)

Membrane Protein Annotation

MemProtMD (2)

Symmetry Type

	Asymmetric (31)
	Cyclic (12)
	Dihedral (5)

SCOP Classification

	Alpha and beta proteins (a+b) (2)
	Artifacts (1)
	Multi-domain proteins (alpha and beta) (1)
	Small proteins (1)

AllSelected

1 to 25 of 48 Structures

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3P24 \| pdb_00003p24	Download File View File

Structure of profragilysin-3 from Bacteroides fragilis

Goulas, T., Arolas, J.L., Gomis-Ruth, F.X.

(2011) Proc Natl Acad Sci U S A 108: 1856-1861

Released	2010-12-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacteroides fragilis
Macromolecule	BFT-3 (protein)
Unique Ligands	AZI, GOL, PG4, ZN

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4YT9 \| pdb_00004yt9	Download File View File

Crystal structure of Porphyromonas gingivalis peptidylarginine deiminase (PPAD) substrate-unbound.

Goulas, T., Mizgalska, D., Garcia-Ferrer, I., Kantyka, T., Guevara, T., Szmigielski, B., Sroka, A., Millan, C., Uson, I., Veillard, F., Potempa, B., Mydel, P., Sola, M., Potempa, J., Gomis-Ruth, F.X.

(2015) Sci Rep 5: 11969-11969

Released	2015-07-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Porphyromonas gingivalis W83
Macromolecule	Peptidylarginine deiminase (protein)
Unique Ligands	GOL, NA

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4YTB \| pdb_00004ytb	Download File View File

Crystal structure of Porphyromonas gingivalis peptidylarginine deiminase (PPAD) in complex with dipeptide Asp-Gln.

Goulas, T., Mizgalska, D., Garcia-Ferrer, I., Kantyka, T., Guevara, T., Szmigielski, B., Sroka, A., Millan, C., Uson, I., Veillard, F., Potempa, B., Mydel, P., Sola, M., Potempa, J., Gomis-Ruth, F.X.

(2015) Sci Rep 5: 11969-11969

Released	2015-07-01
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Porphyromonas gingivalis W83
Macromolecule	Peptidylarginine deiminase (protein)
Unique Ligands	ASP, AZI, CL, GLN, GOL, IMD, NA, PO4

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4YTG \| pdb_00004ytg	Download File View File

Crystal structure of Porphyromonas gingivalis peptidylarginine deiminase (PPAD) mutant C351A in complex with dipeptide Met-Arg.

Goulas, T., Mizgalska, D., Garcia-Ferrer, I., Kantyka, T., Guevara, T., Szmigielski, B., Sroka, A., Millan, C., Uson, I., Veillard, F., Potempa, B., Mydel, P., Sola, M., Potempa, J., Gomis-Ruth, F.X.

(2015) Sci Rep 5: 11969-11969

Released	2015-07-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Porphyromonas gingivalis W83
Macromolecule	Peptidylarginine deiminase (protein)
Unique Ligands	ARG, AZI, CL, CYS, GOL, MET, NA

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4YU5 \| pdb_00004yu5	Download File View File

Crystal structure of selenomethionine variant of Bacillus anthracis immune inhibitor A2 peptidase zymogen

Arolas, J.L., Goulas, T., Gomis-Ruth, F.X.

(2016) Structure 24: 25-36

Released	2015-10-28
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bacillus cereus biovar anthracis str. CI
Macromolecule	Immune inhibitor A, metalloprotease (protein)
Unique Ligands	CA, GOL, K, KH2, ZN

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4YU6 \| pdb_00004yu6	Download File View File

Crystal structure of Bacillus anthracis immune inhibitor A2 peptidase zymogen

Arolas, J.L., Goulas, T., Gomis-Ruth, F.X.

(2016) Structure 24: 25-36

Released	2015-10-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bacillus cereus biovar anthracis str. CI
Macromolecule	Immune inhibitor A, metalloprotease (protein)
Unique Ligands	CA, CCN, K, NA, ZN

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4ZIQ \| pdb_00004ziq	Download File View File

Crystal structure of trypsin activated alpha-2-macroglobulin from Escherichia coli.

Garcia-Ferrer, I., Arede, P., Gomez-Blanco, J., Luque, D., Duquerroy, S., Caston, J.R., Goulas, T., Gomis-Ruth, X.F.

(2015) Proc Natl Acad Sci U S A 112: 8290-8295

Released	2015-06-10
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Escherichia coli K-12
Macromolecule	Uncharacterized lipoprotein YfhM (protein)
Unique Ligands	CL, GOL

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4ZIU \| pdb_00004ziu	Download File View File

Crystal structure of native alpha-2-macroglobulin from Escherichia coli spanning the residues from domain MG7 to the C-terminus.

Garcia-Ferrer, I., Arede, P., Gomez-Blanco, J., Luque, D., Duquerroy, S., Caston, J.R., Goulas, T., Gomis-Ruth, X.F.

(2015) Proc Natl Acad Sci U S A 112: 8290-8295

Released	2015-06-10
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Uncharacterized lipoprotein YfhM (protein)
Unique Ligands	GOL, NI

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4ZJG \| pdb_00004zjg	Download File View File

Crystal structure of native alpha-2-macroglobulin from Escherichia coli spanning domains MG0-NIE-MG1.

Garcia-Ferrer, I., Arede, P., Gomez-Blanco, J., Luque, D., Duquerroy, S., Caston, J.R., Goulas, T., Gomis-Ruth, X.F.

(2015) Proc Natl Acad Sci U S A 112: 8290-8295

Released	2015-06-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	alpha-2-Macroglobulin (protein)
Unique Ligands	1PE, GOL, PEG, PG4, PGE

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4ZJH \| pdb_00004zjh	Download File View File

Crystal structure of native alpha-2-macroglobulin from Escherichia coli spanning domains NIE-MG1.

Garcia-Ferrer, I., Arede, P., Gomez-Blanco, J., Luque, D., Duquerroy, S., Caston, J.R., Goulas, T., Gomis-Ruth, X.F.

(2015) Proc Natl Acad Sci U S A 112: 8290-8295

Released	2015-06-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli K-12
Macromolecule	alpha-2-Macroglobulin (protein)
Unique Ligands	ACT, GOL

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5A42 \| pdb_00005a42	Download File View File

Cryo-EM single particle 3D reconstruction of the native conformation of E. coli alpha-2-macroglobulin (ECAM)

Garcia-Ferrer, I., Arede, P., Gomez-Blanco, J., Luque, D., Duquerroy, S., Caston, J.R., Goulas, T., Gomis-Ruth, F.X.

(2015) Proc Natl Acad Sci U S A 112: 8290

Released	2015-07-29
Method	ELECTRON MICROSCOPY 16 Å
Organisms	Escherichia coli K-12
Macromolecule	UNCHARACTERIZED LIPOPROTEIN YFHM (protein)

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5CX8 \| pdb_00005cx8	Download File View File

Structure of RagB, a major immunodominant virulence factor of Porphyromonas gingivalis.

Goulas, T., Garcia-Ferrer, I., Hutcherson, J.A., Potempa, B.A., Potempa, J., Scott, D.A., Gomis-Ruth, F.X.

(2016) Mol Oral Microbiol 31: 472-485

Released	2015-10-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Porphyromonas gingivalis W83
Macromolecule	Lipoprotein RagB (protein)
Unique Ligands	3DO, ACT, GOL, RP3, TG6

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5M11 \| pdb_00005m11	Download File View File

Structural and functional probing of PorZ, an essential bacterial surface component of the type-IX secretion system of human oral-microbiomic Porphyromonas gingivalis.

Lasica, A.M., Goulas, T., Mizgalska, D., Zhou, X., Ksiazek, M., Madej, M., Guo, Y., Guevara, T., Nowak, M., Potempa, B., Goel, A., Sztukowska, M., Prabhakar, A.T., Bzowska, M., Widziolek, M., Thogersen, I.B., Enghild, J.J., Simonian, M., Kulczyk, A.W., Nguyen, K.-A., Potempa, J., Gomis-Ruth, F.X.

(2016) Sci Rep 6: 37708-37708

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Porphyromonas gingivalis
Macromolecule	Immunoreactive 84kD antigen PG93 (protein)
Unique Ligands	CA, CAC, CL, GOL, PEG, PG4, ZN

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5MUN \| pdb_00005mun	Download File View File

Structural insight into zymogenic latency of gingipain K from Porphyromonas gingivalis.

Pomowski, A., Uson, I., Nowakovska, Z., Veillard, F., Sztukowska, M.N., Guevara, T., Goulas, T., Mizgalska, D., Nowak, M., Potempa, B., Huntington, J.A., Potempa, J., Gomis-Ruth, F.X.

(2017) J Biological Chem 292: 5724-5735

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Porphyromonas gingivalis
Macromolecule	Lys-gingipain W83 (protein)
Unique Ligands	AZI

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5NCS \| pdb_00005ncs	Download File View File

Structure of the native serpin-type proteinase inhibitor, miropin.

Goulas, T., Ksiazek, M., Garcia-Ferrer, I., Mizgalska, D., Potempa, J., Gomis-Ruth, X.

(2017) J Biological Chem 292: 10883-10898

Released	2017-05-24
Method	X-RAY DIFFRACTION 3 Å
Organisms	Tannerella forsythia 92A2
Macromolecule	Serpin (protein)

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5NCT \| pdb_00005nct	Download File View File

Structure of the trypsin induced serpin-type proteinase inhibitor, miropin.

Goulas, T., Ksiazek, M., Garcia-Ferrer, I., Mizgalska, D., Potempa, J., Gomis-Ruth, X.

(2017) J Biological Chem 292: 10883-10898

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Tannerella forsythia
Macromolecule	Serpin-type proteinase inhibitor, miropin (protein)
Unique Ligands	ASP, GOL, SER

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5NCU \| pdb_00005ncu	Download File View File

Structure of the subtilisin induced serpin-type proteinase inhibitor, miropin.

Goulas, T., Ksiazek, M., Garcia-Ferrer, I., Mizgalska, D., Potempa, J., Gomis-Ruth, X.

(2017) J Biological Chem 292: 10883-10898

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Tannerella forsythia
Macromolecule	Serpin (protein)
Unique Ligands	CL, GOL, IOD, K

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5NCW \| pdb_00005ncw	Download File View File

Structure of the trypsin induced serpin-type proteinase inhibitor, miropin (V367K/K368A mutant).

Goulas, T., Ksiazek, M., Garcia-Ferrer, I., Mizgalska, D., Potempa, J., Gomis-Ruth, X.

(2017) J Biological Chem 292: 10883-10898

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Tannerella forsythia
Macromolecule	Serpin-type proteinase inhibitor, miropin (protein)
Unique Ligands	CL, GOL, IOD, K, TRS, ZN

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5NV6 \| pdb_00005nv6	Download File View File

Structure of human transforming growth factor beta-induced protein (TGFBIp).

Garcia-Castellanos, R., Nielsen, S.N., Runager, K., Thogersen, B.I., Goulas, T., Enghild, J.J., Gomis-Ruth, F.X.

(2017) Structure 25: 1740-1750.e2

Released	2017-08-09
Method	X-RAY DIFFRACTION 2.93 Å
Organisms	Homo sapiens
Macromolecule	Transforming growth factor-beta-induced protein ig-h3 (protein)
Unique Ligands	ACT

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6HPV \| pdb_00006hpv	Download File View File

Crystal structure of mouse fetuin-B

Fahrenkamp, D., Dietzel, E., de Sanctis, D., Jovine, L.

(2019) IUCrJ 6: 317-330

Released	2019-02-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	Fetuin-B (protein)
Unique Ligands	ACT, NAG

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6HT9 \| pdb_00006ht9	Download File View File

Mouse fetuin-B in complex with crayfish astacin

Gomis-Ruth, F.X., Goulas, T., Guevara, T., Cuppari, A.

(2019) IUCrJ 6: 317-330

Released	2019-03-13
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Astacus astacus Mus musculus
Macromolecule	Astacin (protein) Fetuin-B (protein)
Unique Ligands	GOL, NAG, ZN
Unique branched monosaccharides	NAG

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6I0X \| pdb_00006i0x	Download File View File

Porphyromonas gingivalis peptidylarginine deminase (PPAD) mutant G231N/E232T/N235D in complex with Cl-amidine.

Gomis-Ruth, F.X., Goulas, T., Sola, M., Potempa, J.

(2019) Protein Sci 28: 478-486

Released	2019-01-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Porphyromonas gingivalis W83
Macromolecule	Peptidylarginine deiminase (protein)
Unique Ligands	BFB, GOL, NA

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6I9A \| pdb_00006i9a	Download File View File

Porphyromonas gingivalis gingipain K (Kgp) in complex with inhibitor KYT-36

Gomis-Ruth, F.X., Guevara, T., Rofdriguez-Banqueri, A.

(2019) Sci Rep 9: 4935-4935

Released	2019-03-13
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Porphyromonas gingivalis
Macromolecule	Lys-gingipain W83 (protein)
Unique Ligands	CA, DTV, EPE, GOL, H8E, NA, UNX

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6I9J \| pdb_00006i9j	Download File View File

Human transforming growth factor beta2 in a tetragonal crystal form

Gomis-Ruth, F.X., Marino-Puertas, L., del Amo-Maestro, L., Goulas, T.

(2019) Sci Rep 9: 8660-8660

Released	2019-07-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Transforming growth factor beta-2 proprotein (protein)

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6SAZ \| pdb_00006saz	Download File View File

Cleaved human fetuin-b in complex with crayfish astacin

Gomis-Ruth, F.X., Guevara, T., Cuppari, A., Korschgen, H., Schmitz, C., Kuske, M., Yiallouros, I., Floehr, J., Jahnen-Dechent, W., Stocker, W.

(2019) Sci Rep 9: 14683-14683

Released	2019-10-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Astacus astacus Homo sapiens
Macromolecule	Astacin (protein) Fetuin-B (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	BMA, FUC, NAG

1 to 25 of 48 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3P24 | pdb_00003p24

4YT9 | pdb_00004yt9

4YTB | pdb_00004ytb

4YTG | pdb_00004ytg

4YU5 | pdb_00004yu5

4YU6 | pdb_00004yu6

4ZIQ | pdb_00004ziq

4ZIU | pdb_00004ziu

4ZJG | pdb_00004zjg

4ZJH | pdb_00004zjh

5A42 | pdb_00005a42

5CX8 | pdb_00005cx8

5M11 | pdb_00005m11

5MUN | pdb_00005mun

5NCS | pdb_00005ncs

5NCT | pdb_00005nct

5NCU | pdb_00005ncu

5NCW | pdb_00005ncw

5NV6 | pdb_00005nv6

6HPV | pdb_00006hpv

6HT9 | pdb_00006ht9

6I0X | pdb_00006i0x

6I9A | pdb_00006i9a

6I9J | pdb_00006i9j

6SAZ | pdb_00006saz