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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Guenaga, J."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Human immunodeficiency virus 1 (6)
	Homo sapiens (3)
	Macaca mulatta (3)
	Mus musculus (2)
	Oryctolagus cuniculus (2)
	Sudan ebolavirus - Uganda (2000) (1)
	Sudan virus - Boniface, Sudan,1976 (1)

Taxonomy

	Eukaryota (10)
	Riboviria (7)

Experimental Method

	X-RAY DIFFRACTION (8)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (3)
	3.0 - 3.5 (1)
	3.5 - 4.0 (4)
	> 4.5 (1)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (8)

Symmetry Type

	Asymmetric (9)
	Cyclic (2)

SCOP Classification

All beta proteins (4)

AllSelected

1 to 11 of 11 Structures

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4KTD \| pdb_00004ktd	Download File View File

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE136, from non-human primate

Poulsen, C., Tran, K., Standfield, R., Wyatt, R.T.

(2014) Proc Natl Acad Sci U S A 111: E738-E747

Released	2014-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Macaca mulatta
Macromolecule	GE136 Heavy Chain Fab (protein) GE136 Light Chain Fab (protein)
Unique Ligands	GOL, SO4

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4KTE \| pdb_00004kte	Download File View File

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE148, from non-human primate

Poulsen, C., Tran, K., Stanfield, R., Wyatt, R.T.

(2014) Proc Natl Acad Sci U S A 111: E738-E747

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Macaca mulatta
Macromolecule	GE148 Heavy Chain Fab (protein) GE148 Light Chain Fab (protein)
Unique Ligands	GOL, SO4

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4Q2Z \| pdb_00004q2z	Download File View File

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE356, from a non-human primate

Navis, M., Tran, K., Bale, S., Phad, G., Guenaga, J., Wilson, R., Soldemo, M., McKee, K., Sundling, C., Mascola, J., Li, Y., Wyatt, R.T., Hedestam, G.B.K.

(2014) PLoS Pathog 10: e1004337-e1004337

Released	2014-09-17
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Macaca mulatta
Macromolecule	Heavy chain of Fab fragment of HIV vaccine-elicited CD4bs-directed antibody (protein) Light chain of Fab fragment of HIV vaccine-elicited CD4bs-directed antibody (protein)

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5UM8 \| pdb_00005um8	Download File View File

Crystal structure of HIV-1 envelope trimer 16055 NFL TD CC (T569G) in complex with Fabs 35022 and PGT124

Garces, F., Stanfield, R.L., Wilson, I.A.

(2017) Immunity 46: 792-803.e3

Released	2017-05-24
Method	X-RAY DIFFRACTION 3.935 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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6MAR \| pdb_00006mar	Download File View File

HIV-1 Envelope Glycoprotein Clone BG505 delCT N332T in complex with broadly neutralizing antibody Fab PGT151

Berndsen, Z.T., Ward, A.B.

(2018) Nat Commun 9: 3693-3693

Released	2018-09-26
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp160 (protein) Immunoglobulin G PGT151 Fab, Heavy chain (protein) Immunoglobulin G PGT151, Light chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG

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6OAF \| pdb_00006oaf	Download File View File

Sudan virus nucleoprotein core domain in complex with VP35 chaperoning peptide

Landeras-Bueno, S., Oda, S., Norris, M.J., Li Salie, Z., Ollmann Saphire, E.

(2019) mBio 10:

Released	2019-08-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Sudan ebolavirus - Uganda (2000) Sudan virus - Boniface, Sudan,1976
Macromolecule	Polymerase cofactor VP35,Nucleoprotein (protein)

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6P62 \| pdb_00006p62	Download File View File

HIV Env BG505 NFL TD+ in complex with antibody E70 fragment antigen binding

Ozorowski, G., Torres, J.L., Ward, A.B.

(2019) Immunity 51: 915-929.e7

Released	2019-11-20
Method	ELECTRON MICROSCOPY 3.57 Å
Organisms	Human immunodeficiency virus 1 Oryctolagus cuniculus
Macromolecule	HIV-1 Env BG505 NFL TD+ (protein) Rabbit monoclonal antibody E70 heavy chain fragment antigen binding (protein) Rabbit monoclonal antibody E70 kappa chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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6P65 \| pdb_00006p65	Download File View File

HIV Env 16055 NFL TD 2CC+ in complex with antibody 1C2 fragment antigen binding

Ozorowski, G., Torres, J.L., Ward, A.B.

(2019) Immunity 51: 915-929.e7

Released	2019-11-20
Method	ELECTRON MICROSCOPY 3.94 Å
Organisms	Human immunodeficiency virus 1 Oryctolagus cuniculus
Macromolecule	HIV Env 16055 NFL TD 2CC+ (protein) Rabbit antibody 1C2 heavy chain fragment antigen binding (protein) Rabbit antibody 1C2 kappa chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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6P8M \| pdb_00006p8m	Download File View File

Crystal Structure of Antibody P-p3b3 A60C Heavy Chain in Complex with 426c HIV-1 gp120 core G459C

Weidle, C., Pancera, M.

(2019) Cell Rep 29: 3060-3072.e7

Released	2019-11-20
Method	X-RAY DIFFRACTION 3.594 Å
Organisms	Human immunodeficiency virus 1 Mus musculus
Macromolecule	Gp120 (protein) P-p3b3 Heavy Chain (protein) P-p3b3 Light Chain (protein)
Unique Ligands	CL, EDO, NA, NAG, NH4, PEG
Unique branched monosaccharides	BMA, MAN, NAG

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6P8N \| pdb_00006p8n	Download File View File

Crystal Structure of Antibody P-p1f1 in Complex with eOD-GT8

Weidle, C., Pancera, M.

(2019) Cell Rep 29: 3060-3072.e7

Released	2019-11-20
Method	X-RAY DIFFRACTION 3.202 Å
Organisms	Human immunodeficiency virus 1 Mus musculus
Macromolecule	Env outer domain eOD-GT8 (protein) P-p1f1 Heavy Chain (protein) P-p1f1 Light Chain (protein)
Unique Ligands	EDO, NAG, NH4

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6PEH \| pdb_00006peh	Download File View File

Crystal structure of rabbit monoclonal anti-HIV antibody 1C2

Liban, T., Pancera, M.

(2019) Immunity 51: 915-929.e7

Released	2019-11-20
Method	X-RAY DIFFRACTION 2.296 Å
Organisms	Homo sapiens
Macromolecule	1C2 Fab Heavy Chain (protein) 1C2 Fab Light Chain (protein)
Unique Ligands	SO4

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4KTD | pdb_00004ktd

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE136, from non-human primate

4KTE | pdb_00004kte

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE148, from non-human primate

4Q2Z | pdb_00004q2z

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE356, from a non-human primate

5UM8 | pdb_00005um8

Crystal structure of HIV-1 envelope trimer 16055 NFL TD CC (T569G) in complex with Fabs 35022 and PGT124

6MAR | pdb_00006mar

HIV-1 Envelope Glycoprotein Clone BG505 delCT N332T in complex with broadly neutralizing antibody Fab PGT151

6OAF | pdb_00006oaf

Sudan virus nucleoprotein core domain in complex with VP35 chaperoning peptide

6P62 | pdb_00006p62

HIV Env BG505 NFL TD+ in complex with antibody E70 fragment antigen binding

6P65 | pdb_00006p65

HIV Env 16055 NFL TD 2CC+ in complex with antibody 1C2 fragment antigen binding

6P8M | pdb_00006p8m

Crystal Structure of Antibody P-p3b3 A60C Heavy Chain in Complex with 426c HIV-1 gp120 core G459C

6P8N | pdb_00006p8n

Crystal Structure of Antibody P-p1f1 in Complex with eOD-GT8

6PEH | pdb_00006peh

Crystal structure of rabbit monoclonal anti-HIV antibody 1C2

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

4KTD | pdb_00004ktd

4KTE | pdb_00004kte

4Q2Z | pdb_00004q2z

5UM8 | pdb_00005um8

6MAR | pdb_00006mar

6OAF | pdb_00006oaf

6P62 | pdb_00006p62

6P65 | pdb_00006p65

6P8M | pdb_00006p8m

6P8N | pdb_00006p8n

6PEH | pdb_00006peh