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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hitomi, C."

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Aequorea victoria (7)
	Homo sapiens (7)
	Pyrococcus furiosus (3)
	Alvinella pompejana (2)
	Arabidopsis thaliana (1)
	Oryza sativa Japonica Group (1)
	Schizosaccharomyces pombe (1)

Taxonomy

	Eukaryota (19)
	Archaea (3)

Experimental Method

X-RAY DIFFRACTION (22)

Polymer Entity Type

	Protein (22)
	DNA (2)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (4)
	1.5 - 2.0 (8)
	2.0 - 2.5 (7)
	2.5 - 3.0 (2)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (17)
	2010 - 2014 (4)

Enzyme Classification Name

	Hydrolases (7)
	Transferases (7)
	Isomerases (5)
	Ligases (2)
	Oxidoreductases (2)
	Lyases (1)

Symmetry Type

	Asymmetric (15)
	Cyclic (7)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (11)
	Alpha and beta proteins (a/b) (1)
	All beta proteins (2)
	All alpha proteins (1)
	Artifacts (1)

AllSelected

1 to 22 of 22 Structures

Page 1 of 1

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1PZN \| pdb_00001pzn	Download File View File

Rad51 (RadA)

Shin, D.S., Tainer, J.A.

(2003) EMBO J 22: 4566-4576

Released	2003-09-09
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA repair and recombination protein rad51 (protein)
Unique Ligands	GOL, IMD, MPD, SO4

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2AWJ \| pdb_00002awj	Download File View File

GFP R96M pre-cyclized intermediate in chromophore formation

Wood, T.I., Barondeau, D.P., Hitomi, C., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2005) Biochemistry 44: 16211-16220

Released	2006-04-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Aequorea victoria
Macromolecule	green-fluorescent protein (protein)
Unique Ligands	MG

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2AWK \| pdb_00002awk	Download File View File

GFP R96M mature chromophore

Wood, T.I., Barondeau, D.P., Hitomi, C., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2005) Biochemistry 44: 16211-16220

Released	2006-04-18
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Aequorea victoria
Macromolecule	green fluorescent protein (protein)
Unique Ligands	MG

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2AWL \| pdb_00002awl	Download File View File

Mature R96K GFP mutant

Wood, T.I., Barondeau, D.P., Hitomi, C., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2005) Biochemistry 44: 16211-16220

Released	2006-04-18
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Aequorea victoria
Macromolecule	green fluorescent protein (protein)
Unique Ligands	MG

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2AWM \| pdb_00002awm	Download File View File

GFP R96A chromophore maturation recovery mutant R96A Q183R

Wood, T.I., Barondeau, D.P., Hitomi, C., Kassmann, C.J., Tainer, J.A., Getzoff, E.D.

(2005) Biochemistry 44: 16211-16220

Released	2006-04-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Aequorea victoria
Macromolecule	green fluorescent protein (protein)
Unique Ligands	MG

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2FBT \| pdb_00002fbt	Download File View File

WRN exonuclease

Perry, J.J.

(2006) Nat Struct Mol Biol 13: 414-422

Released	2006-04-25
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Werner syndrome helicase (protein)
Unique Ligands	ACY

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2FBV \| pdb_00002fbv	Download File View File

WRN exonuclease, Mn complex

Perry, J.J.

(2006) Nat Struct Mol Biol 13: 414-422

Released	2006-04-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Werner syndrome helicase (protein)
Unique Ligands	MN

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2FBX \| pdb_00002fbx	Download File View File

WRN exonuclease, Mg complex

Perry, J.J.

(2006) Nat Struct Mol Biol 13: 414-422

Released	2006-04-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Werner syndrome helicase (protein)
Unique Ligands	MG

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2FBY \| pdb_00002fby	Download File View File

WRN exonuclease, Eu complex

Perry, J.J.

(2006) Nat Struct Mol Biol 13: 414-422

Released	2006-04-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Werner syndrome helicase (protein)
Unique Ligands	EU3

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2FC0 \| pdb_00002fc0	Download File View File

WRN exonuclease, Mn dGMP complex

Perry, J.J., Tainer, J.A.

(2006) Nat Struct Mol Biol 13: 414-422

Released	2006-04-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Werner syndrome helicase (protein)
Unique Ligands	DGP, MN

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2QRF \| pdb_00002qrf	Download File View File

Green Fluorescent Protein: Cyclized-only Intermediate of Chromophore Maturation in the Q183E variant

Wood, T.I., Barondeau, D.P., Hitomi, C., Tainer, J.A., Getzoff, E.D.

To be published

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Aequorea victoria
Macromolecule	Green fluorescent protein (protein)
Unique Ligands	EDO, MG

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2QT2 \| pdb_00002qt2	Download File View File

Cyclized-Dehydrated Intermediate of GFP Variant Q183E in Chromophore Maturation

Wood, T.I., Barondeau, D.P., Hitomi, C., Tainer, J.A., Getzoff, E.D.

To be published

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.31 Å
Organisms	Aequorea victoria
Macromolecule	Green fluorescent protein (protein)
Unique Ligands	EDO

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2QZ0 \| pdb_00002qz0	Download File View File

Mature Q183E variant of Green Fluorescent Protein Chromophore

Wood, T.I., Barondeau, D.P., Hitomi, C., Tainer, J.A., Getzoff, E.D.

To be published

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Aequorea victoria
Macromolecule	Green fluorescent protein (protein)
Unique Ligands	MG

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3DSC \| pdb_00003dsc	Download File View File

Crystal structure of P. furiosus Mre11 DNA synaptic complex

Williams, R.S., Moncalian, G., Shin, D.S., Tainer, J.A.

(2008) Cell 135: 97-109

Released	2008-10-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA double-strand break repair protein mre11 (protein) DNA (5'-D(PDCPDAPDCPDAPDAPDGPDCPDTPDTPDTPDTPDGPDCPDTPDTPDGPDTPDGPDAPDC)-3') (nucleic acid)

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3DSD \| pdb_00003dsd	Download File View File

Crystal structure of P. furiosus Mre11-H85S bound to a branched DNA and manganese

Williams, R.S., Moiani, D., Tainer, J.A.

(2008) Cell 135: 97-109

Released	2008-10-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA double-strand break repair protein mre11 (protein) DNA (5'-D(DCPDGPDCPDGPDCPDAPDCPDAPDAPDGPDCPDTPDTPDTPDTPDGPDCPDTPDTPDGPDTPDGPDGPDAPDTPDA)-3') (nucleic acid)
Unique Ligands	MN

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3F7K \| pdb_00003f7k	Download File View File

X-ray Crystal Structure of an Alvinella pompejana Cu,Zn Superoxide Dismutase- Hydrogen Peroxide Complex

Shin, D.S., DiDonato, M., Barondeau, D.P., Getzoff, E.D., Tainer, J.A.

(2009) J Mol Biology 385: 1534-1555

Released	2009-02-10
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Alvinella pompejana
Macromolecule	Copper,Zinc Superoxide Dismutase (protein)
Unique Ligands	CU, CU1, NA, PEO, SO4, ZN

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3F7L \| pdb_00003f7l	Download File View File

X-ray Crystal Structure of Alvinella pompejana Cu,Zn Superoxide Dismutase

Shin, D.S., DiDonato, M., Barondeau, D.P., Getzoff, E.D., Tainer, J.A.

(2009) J Mol Biology 385: 1534-1555

Released	2009-02-10
Method	X-RAY DIFFRACTION 0.99 Å
Organisms	Alvinella pompejana
Macromolecule	Copper,Zinc Superoxide Dismutase (protein)
Unique Ligands	ACY, CU, CU1, NA, SO4, ZN

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3K3K \| pdb_00003k3k	Download File View File

Crystal structure of dimeric abscisic acid (ABA) receptor pyrabactin resistance 1 (PYR1) with ABA-bound closed-lid and ABA-free open-lid subunits

Arvai, A.S., Hitomi, K., Getzoff, E.D.

(2009) Science 326: 1373-1379

Released	2009-11-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Arabidopsis thaliana
Macromolecule	Abscisic acid receptor PYR1 (protein)
Unique Ligands	A8S

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3RCZ \| pdb_00003rcz	Download File View File

Rad60 SLD2 Ubc9 Complex

Perry, J.J.P., Arvai, A.S., Tainer, J.A.

(2011) Mol Cell Biol 31: 2299-2310

Released	2011-04-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	DNA repair protein rad60 (protein) SUMO-conjugating enzyme ubc9 (protein)

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3RD2 \| pdb_00003rd2	Download File View File

NIP45 SUMO-like Domain 2

Perry, J.J.P., Arvai, A.S., Tainer, J.A.

(2011) Mol Cell Biol 31: 2299-2310

Released	2011-04-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	NFATC2-interacting protein (protein)

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3UMV \| pdb_00003umv	Download File View File

Eukaryotic Class II CPD photolyase structure reveals a basis for improved UV-tolerance in plants

Arvai, A.S., Hitomi, K., Getzoff, E.D., Tainer, J.A.

(2012) J Biological Chem 287: 12060-12069

Released	2011-12-21
Method	X-RAY DIFFRACTION 1.705 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Deoxyribodipyrimidine photo-lyase (protein)
Unique Ligands	EDO, FAD, URE