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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hughes, R.K."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Phytophthora infestans (3)
	Streptococcus pyogenes serotype M1 (3)
	Homo sapiens (2)
	Fusarium oxysporum (1)
	Photorhabdus laumondii subsp. laumondii TTO1 (1)
	Physcomitrium patens (1)
	Phytophthora capsici (1)
	Phytophthora infestans T30-4 (1)
	Pseudomonas syringae pv. pisi (1)
	Solanum lycopersicum (1)

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Taxonomy

	Eukaryota (10)
	Bacteria (6)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (1)
	1.5 - 2.0 (9)
	2.0 - 2.5 (1)
	2.5 - 3.0 (2)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (6)
	2015 - 2019 (5)

Enzyme Classification Name

	Hydrolases (2)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (11)
	Cyclic (5)

SCOP Classification

Alpha and beta proteins (a+b) (2)

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1 to 14 of 14 Structures

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3FN5 \| pdb_00003fn5	Download File View File

Crystal structure of sortase A (Spy1154) from Streptococcus pyogenes serotype M1 strain SF370

Banfield, M.J.

(2009) J Biological Chem 284: 6924-6933

Released	2009-01-06
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptococcus pyogenes serotype M1
Macromolecule	Sortase A (protein)
Unique Ligands	EPE

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3FN6 \| pdb_00003fn6	Download File View File

Crystal structure of sortase A from Streptococcus pyogenes serotype M1 strain SF370 with the active site Cys in its sulphenic acid form

Banfield, M.J.

(2009) J Biological Chem 284: 6924-6933

Released	2009-01-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptococcus pyogenes serotype M1
Macromolecule	Sortase A (protein)

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3FN7 \| pdb_00003fn7	Download File View File

Crystal structure of sortase A (Spy1154) from Streptococcus pyogenes serotype M1 strain SF370

Banfield, M.J.

(2009) J Biological Chem 284: 6924-6933

Released	2009-01-06
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Streptococcus pyogenes serotype M1
Macromolecule	Sortase A (protein)

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3ZR8 \| pdb_00003zr8	Download File View File

Crystal structure of RxLR effector Avr3a11 from Phytophthora capsici

Boutemy, L.S., King, S.R.F., Win, J., Hughes, R.K., Clarke, T.A., Blumenschein, T.M.A., Kamoun, S., Banfield, M.J.

(2011) J Biological Chem 286: 35834

Released	2011-08-03
Method	X-RAY DIFFRACTION 0.9 Å
Organisms	Phytophthora capsici
Macromolecule	AVR3A11 (protein)
Unique Ligands	CL, PGE

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3ZRG \| pdb_00003zrg	Download File View File

Crystal structure of RxLR effector PexRD2 from Phytophthora infestans

King, S.R.F., Boutemy, L.S., Win, J., Hughes, R.K., Clarke, T.A., Blumenschein, T.M.A., Kamoun, S., Banfield, M.J.

(2011) J Biological Chem 286: 35834

Released	2011-08-03
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Phytophthora infestans
Macromolecule	PEXRD2 FAMILY SECRETED RXLR EFFECTOR PEPTIDE, PUTATIVE (protein)
Unique Ligands	BR

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4B6X \| pdb_00004b6x	Download File View File

Crystal structure of in planta processed AvrRps4

Sohn, K.H., Hughes, R.K., Piquerez, S.J., Jones, J.D.G., Banfield, M.J.

(2012) Proc Natl Acad Sci U S A 109: 16371

Released	2012-09-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pseudomonas syringae pv. pisi
Macromolecule	AVIRULENCE PROTEIN (protein)
Unique Ligands	ACT

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4BWV \| pdb_00004bwv	Download File View File

Structure of Adenosine 5-prime-phosphosulfate Reductase apr-b from Physcomitrella Patens

Stevenson, C.E.M., Hughes, R.K., McManus, M.T., Lawson, D.M., Kopriva, S.

(2013) FEBS Lett 587: 3626

Released	2013-11-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Physcomitrium patens
Macromolecule	PHOSPHOADENOSINE-PHOSPHOSULPHATE REDUCTASE (protein)
Unique Ligands	PEG

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4F8C \| pdb_00004f8c	Download File View File

Structure of the Cif:Nedd8 complex - Yersinia pseudotuberculosis Cycle Inhibiting Factor in complex with human Nedd8

Crow, A., Banfield, M.

(2012) Proc Natl Acad Sci U S A

Released	2012-06-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens Yersinia pseudotuberculosis YPIII
Macromolecule	Cycle Inhibiting Factor (protein) NEDD8 (protein)
Unique Ligands	EDO

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4FBJ \| pdb_00004fbj	Download File View File

Structure of the Cif:Nedd8 complex - Photorhabdus luminescens Cycle Inhibiting Factor in complex with human Nedd8

Crow, A., Banfield, M.J.

(2012) Proc Natl Acad Sci U S A

Released	2012-06-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	Hypothetical protein (protein) NEDD8 (protein)
Unique Ligands	CL

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5L7S \| pdb_00005l7s	Download File View File

Crystal structure of RXLR effector PexRD54 from Phytophthora infestans

Maqbool, A., Hughes, R.K., Banfield, M.J.

(2016) J Biological Chem 291: 20270-20282

Released	2016-08-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Phytophthora infestans
Macromolecule	Secreted RxLR effector peptide protein (protein)

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5L83 \| pdb_00005l83	Download File View File

Complex of potato ATG8 protein with a peptide from Irish potato famine pathogen effector protein PexRD54

Maqbool, A., Hughes, R.K., Banfield, M.J.

(2016) J Biological Chem 291: 20270-20282

Released	2016-08-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Phytophthora infestans Solanum tuberosum
Macromolecule	ASP-TRP-GLU-ILE-VAL (protein) Autophagy-related protein (protein)
Unique Ligands	EDO, SO4

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5OD4 \| pdb_00005od4	Download File View File

Avr2 effector protein from the fungal plant pathogen Fusarium oxysporum

Hughes, R.K., Banfield, M.J.

(2017) New Phytol 216: 897-914

Released	2017-08-16
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Fusarium oxysporum
Macromolecule	Secreted in xylem 3 (protein)
Unique Ligands	EDO

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6GU1 \| pdb_00006gu1	Download File View File

SFI3 effector protein from the oomycete plant pathogen Phytophthora infestans

Hughes, R.K., Banfield, M.J.

(2019) New Phytol 222: 438-454

Released	2018-12-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Phytophthora infestans T30-4
Macromolecule	Secreted RxLR effector peptide protein, putative (protein)

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6S2P \| pdb_00006s2p	Download File View File

Structure of the NB-ARC domain from the Tomato immune receptor NRC1

Steele, J.F.C., Banfield, M.J.

(2019) PLoS One 14: e0221226-e0221226

Released	2019-07-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Solanum lycopersicum
Macromolecule	NRC1 (protein)
Unique Ligands	ADP

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3FN5 | pdb_00003fn5

Crystal structure of sortase A (Spy1154) from Streptococcus pyogenes serotype M1 strain SF370

3FN6 | pdb_00003fn6

Crystal structure of sortase A from Streptococcus pyogenes serotype M1 strain SF370 with the active site Cys in its sulphenic acid form

3FN7 | pdb_00003fn7

Crystal structure of sortase A (Spy1154) from Streptococcus pyogenes serotype M1 strain SF370

3ZR8 | pdb_00003zr8

Crystal structure of RxLR effector Avr3a11 from Phytophthora capsici

3ZRG | pdb_00003zrg

Crystal structure of RxLR effector PexRD2 from Phytophthora infestans

4B6X | pdb_00004b6x

Crystal structure of in planta processed AvrRps4

4BWV | pdb_00004bwv

Structure of Adenosine 5-prime-phosphosulfate Reductase apr-b from Physcomitrella Patens

4F8C | pdb_00004f8c

Structure of the Cif:Nedd8 complex - Yersinia pseudotuberculosis Cycle Inhibiting Factor in complex with human Nedd8

4FBJ | pdb_00004fbj

Structure of the Cif:Nedd8 complex - Photorhabdus luminescens Cycle Inhibiting Factor in complex with human Nedd8

5L7S | pdb_00005l7s

Crystal structure of RXLR effector PexRD54 from Phytophthora infestans

5L83 | pdb_00005l83

Complex of potato ATG8 protein with a peptide from Irish potato famine pathogen effector protein PexRD54

5OD4 | pdb_00005od4

Avr2 effector protein from the fungal plant pathogen Fusarium oxysporum

6GU1 | pdb_00006gu1

SFI3 effector protein from the oomycete plant pathogen Phytophthora infestans

6S2P | pdb_00006s2p

Structure of the NB-ARC domain from the Tomato immune receptor NRC1

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3FN5 | pdb_00003fn5

3FN6 | pdb_00003fn6

3FN7 | pdb_00003fn7

3ZR8 | pdb_00003zr8

3ZRG | pdb_00003zrg

4B6X | pdb_00004b6x

4BWV | pdb_00004bwv

4F8C | pdb_00004f8c

4FBJ | pdb_00004fbj

5L7S | pdb_00005l7s

5L83 | pdb_00005l83

5OD4 | pdb_00005od4

6GU1 | pdb_00006gu1

6S2P | pdb_00006s2p