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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Karcher, A."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Pyrococcus furiosus (8)
	Homo sapiens (4)
	Aequorea victoria (2)
	Camelus dromedarius (2)
	Pyrococcus abyssi (1)
	Pyrococcus furiosus DSM 3638 (1)
	Saccharomyces cerevisiae (1)
	Thermococcus kodakarensis (1)

Taxonomy

	Archaea (10)
	Eukaryota (7)

Experimental Method

	X-RAY DIFFRACTION (15)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (17)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (6)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)
	> 4.5 (2)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (10)
	2005 - 2009 (4)
	2010 - 2014 (2)

Enzyme Classification Name

Hydrolases (7)

Symmetry Type

	Asymmetric (14)
	Cyclic (4)

SCOP Classification

	Alpha and beta proteins (a/b) (4)
	All beta proteins (6)
	Alpha and beta proteins (a+b) (4)
	Artifacts (2)
	Coiled coil proteins (1)
	Small proteins (1)

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1 to 17 of 17 Structures

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1F2T \| pdb_00001f2t	Download File View File

Crystal Structure of ATP-Free RAD50 ABC-ATPase

Hopfner, K.P., Karcher, A., Shin, D.S., Craig, L.

(2000) Cell 101: 789-800

Released	2000-08-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pyrococcus furiosus
Macromolecule	RAD50 ABC-ATPASE (protein)

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1F2U \| pdb_00001f2u	Download File View File

Crystal Structure of RAD50 ABC-ATPase

Hopfner, K.P., Karcher, A., Shin, D.S., Craig, L.

(2000) Cell 101: 789-800

Released	2000-08-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pyrococcus furiosus
Macromolecule	RAD50 ABC-ATPASE (protein)
Unique Ligands	ATP, MG

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1F5K \| pdb_00001f5k	Download File View File

UROKINASE PLASMINOGEN ACTIVATOR B-CHAIN-BENZAMIDINE COMPLEX

Zeslawska, E., Schweinitz, A., Karcher, A., Sondermann, P., Sperl, S., Sturzebecher, J., Jacob, U.

(2000) J Mol Biology 301: 465-475

Released	2001-06-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	UROKINASE-TYPE PLASMINOGEN ACTIVATOR (protein)
Unique Ligands	BEN, SO4

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1F5L \| pdb_00001f5l	Download File View File

UROKINASE PLASMINOGEN ACTIVATOR B-CHAIN-AMILORIDE COMPLEX

Zeslawska, E., Schweinitz, A., Karcher, A., Sondermann, P., Sperl, S., Sturzebecher, J., Jacob, U.

(2000) J Mol Biology 301: 465-475

Released	2001-06-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	UROKINASE-TYPE PLASMINOGEN ACTIVATOR (protein)
Unique Ligands	AMR, SO4

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1F92 \| pdb_00001f92	Download File View File

UROKINASE PLASMINOGEN ACTIVATOR B CHAIN-UKI-1D COMPLEX

Zeslawska, E., Schweinitz, A., Karcher, A., Sondermann, P., Sperl, S., Sturzebecher, J., Jacob, U.

(2000) J Mol Biology 301: 465-475

Released	2001-07-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	UROKINASE-TYPE PLASMINOGEN ACTIVATOR (protein)
Unique Ligands	SO4, UKP

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1II7 \| pdb_00001ii7	Download File View File

Crystal structure of P. furiosus Mre11 with manganese and dAMP

Hopfner, K.-P., Karcher, A., Craig, L., Woo, T.T., Carney, J.P., Tainer, J.A.

(2001) Cell 105: 473-485

Released	2001-05-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus furiosus
Macromolecule	Mre11 nuclease (protein)
Unique Ligands	D5M, MN, PO4, SO4

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1II8 \| pdb_00001ii8	Download File View File

Crystal structure of the P. furiosus Rad50 ATPase domain

Hopfner, K.-P., Karcher, A., Craig, L., Woo, T.T., Carney, J.P., Tainer, J.A.

(2001) Cell 105: 473-485

Released	2001-05-30
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Pyrococcus furiosus
Macromolecule	Rad50 ABC-ATPase (protein)
Unique Ligands	PO4

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1L8D \| pdb_00001l8d	Download File View File

Rad50 coiled-coil Zn hook

Hopfner, K.P., Tainer, J.A.

(2002) Nature 418: 562-566

Released	2002-08-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA double-strand break repair rad50 ATPase (protein)
Unique Ligands	CIT, HG, PO4

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1RFN \| pdb_00001rfn	Download File View File

HUMAN COAGULATION FACTOR IXA IN COMPLEX WITH P-AMINO BENZAMIDINE

Hopfner, K.-P., Lang, A., Karcher, A., Sichler, K., Kopetzki, E., Brandstetter, H., Huber, R., Bode, W., Engh, R.A.

(1999) Structure 7: 989-996

Released	1999-09-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (COAGULATION FACTOR IX) (protein)
Unique Ligands	CA, PBZ, TBU

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1S8E \| pdb_00001s8e	Download File View File

Crystal structure of Mre11-3

Hopfner, K.P.

(2004) Nucleic Acids Res 32: 1886-1893

Released	2004-08-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	exonuclease putative (protein)
Unique Ligands	MN

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1US8 \| pdb_00001us8	Download File View File

The Rad50 signature motif: essential to ATP binding and biological function

Moncalian, G., Lengsfeld, B., Bhaskara, V., Hopfner, K.P., Karcher, A., Alden, E., Tainer, J.A., Paull, T.T.

(2004) J Mol Biology 335: 937

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE (protein)

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1YQT \| pdb_00001yqt	Download File View File

RNase-L Inhibitor

Karcher, A., Buttner, K., Martens, B., Jansen, R.P., Hopfner, K.P.

(2005) Structure 13: 649-659

Released	2005-04-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pyrococcus furiosus
Macromolecule	RNase l inhibitor (protein)
Unique Ligands	ADP, MG

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3BK7 \| pdb_00003bk7	Download File View File

Structure of the complete ABCE1/RNAase-L Inhibitor protein from Pyrococcus abysii

Karcher, A., Hopfner, K.P.

(2008) J Biological Chem 283: 7962-7971

Released	2007-12-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pyrococcus abyssi
Macromolecule	ABC transporter ATP-binding protein (protein)
Unique Ligands	ADP, MG, SF4

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3G9A \| pdb_00003g9a	Download File View File

Green fluorescent protein bound to minimizer nanobody

Kirchhofer, A., Helma, J., Schmidthals, K., Frauer, C., Cui, S., Karcher, A., Pellis, M., Muyldermans, S., Delucci, C.C., Cardoso, M.C., Leonhardt, H., Hopfner, K.-P., Rothbauer, U.

(2010) Nat Struct Mol Biol 17: 133-138

Released	2009-12-08
Method	X-RAY DIFFRACTION 1.614 Å
Organisms	Aequorea victoria Camelus dromedarius
Macromolecule	Green fluorescent protein (protein) Minimizer (protein)

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3J15 \| pdb_00003j15	Download File View File

Model of ribosome-bound archaeal Pelota and ABCE1

Becker, T., Franckenberg, S., Wickles, S., Shoemaker, C.J., Anger, A.M., Armache, J.-P., Sieber, H., Ungewickell, C., Berninghausen, O., Daberkow, I., Karcher, A., Thomm, M., Hopfner, K.-P., Green, R., Beckmann, R.

(2012) Nature 482: 501-506

Released	2012-02-22
Method	ELECTRON MICROSCOPY 6.6 Å
Organisms	Pyrococcus furiosus Thermococcus kodakarensis
Macromolecule	ABC transporter ATP-binding protein (protein) Protein pelota (protein)
Unique Ligands	ADP, SF4

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3J16 \| pdb_00003j16	Download File View File

Models of ribosome-bound Dom34p and Rli1p and their ribosomal binding partners

(2012) Nature 482: 501-506

Released	2012-02-22
Method	ELECTRON MICROSCOPY 7.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 9 Unique nucleic acid chains: 3
Unique Ligands	ATP, MG, SF4

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3K1K \| pdb_00003k1k	Download File View File

Green fluorescent protein bound to enhancer nanobody

Kirchhofer, A., Helma, J., Schmidthals, K., Frauer, C., Cui, S., Karcher, A., Pellis, M., Muyldermans, S., Delucci, C.C., Cardoso, M.C., Leonhardt, H., Hopfner, K.-P., Rothbauer, U.

(2010) Nat Struct Mol Biol 17: 133-138

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Aequorea victoria Camelus dromedarius
Macromolecule	Enhancer (protein) Green Fluorescent Protein (protein)

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1F2T | pdb_00001f2t

Crystal Structure of ATP-Free RAD50 ABC-ATPase

1F2U | pdb_00001f2u

Crystal Structure of RAD50 ABC-ATPase

1F5K | pdb_00001f5k

UROKINASE PLASMINOGEN ACTIVATOR B-CHAIN-BENZAMIDINE COMPLEX

1F5L | pdb_00001f5l

UROKINASE PLASMINOGEN ACTIVATOR B-CHAIN-AMILORIDE COMPLEX

1F92 | pdb_00001f92

UROKINASE PLASMINOGEN ACTIVATOR B CHAIN-UKI-1D COMPLEX

1II7 | pdb_00001ii7

Crystal structure of P. furiosus Mre11 with manganese and dAMP

1II8 | pdb_00001ii8

Crystal structure of the P. furiosus Rad50 ATPase domain

1L8D | pdb_00001l8d

Rad50 coiled-coil Zn hook

1RFN | pdb_00001rfn

HUMAN COAGULATION FACTOR IXA IN COMPLEX WITH P-AMINO BENZAMIDINE

1S8E | pdb_00001s8e

Crystal structure of Mre11-3

1US8 | pdb_00001us8

The Rad50 signature motif: essential to ATP binding and biological function

1YQT | pdb_00001yqt

RNase-L Inhibitor

3BK7 | pdb_00003bk7

Structure of the complete ABCE1/RNAase-L Inhibitor protein from Pyrococcus abysii

3G9A | pdb_00003g9a

Green fluorescent protein bound to minimizer nanobody

3J15 | pdb_00003j15

Model of ribosome-bound archaeal Pelota and ABCE1

3J16 | pdb_00003j16

Models of ribosome-bound Dom34p and Rli1p and their ribosomal binding partners

3K1K | pdb_00003k1k

Green fluorescent protein bound to enhancer nanobody

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1F2T | pdb_00001f2t

1F2U | pdb_00001f2u

1F5K | pdb_00001f5k

1F5L | pdb_00001f5l

1F92 | pdb_00001f92

1II7 | pdb_00001ii7

1II8 | pdb_00001ii8

1L8D | pdb_00001l8d

1RFN | pdb_00001rfn

1S8E | pdb_00001s8e

1US8 | pdb_00001us8

1YQT | pdb_00001yqt

3BK7 | pdb_00003bk7

3G9A | pdb_00003g9a

3J15 | pdb_00003j15

3J16 | pdb_00003j16

3K1K | pdb_00003k1k