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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kato, R."

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Search Summary

This query matches 182 Structures.

Refinements

Structure Determination Methodology

experimental (182)

Scientific Name of Source Organism

	Homo sapiens (100)
	Mus musculus (27)
	Bos taurus (9)
	Thermus thermophilus HB8 (8)
	Canis lupus familiaris (7)
	Saccharomyces cerevisiae (7)
	Aequorea victoria (5)
	Bifidobacterium bifidum (4)
	Conus geographus (4)
	Aspergillus oryzae RIB40 (3)

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Taxonomy

	Eukaryota (155)
	Bacteria (24)
	Eukaryota (eukaryotes) (5)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (177)
	SOLUTION NMR (5)

Polymer Entity Type

Protein (182)

Refinement Resolution (Å)

	1.0 - 1.5 (19)
	1.5 - 2.0 (67)
	2.0 - 2.5 (44)
	2.5 - 3.0 (32)
	3.0 - 3.5 (14)
	3.5 - 4.0 (1)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (2)
	2000 - 2004 (19)
	2005 - 2009 (76)
	2010 - 2014 (39)
	2015 - 2019 (22)
	2020 - 2024 (20)

Enzyme Classification Name

	Transferases (42)
	Hydrolases (38)
	Ligases (1)
	Oxidoreductases (2)
	Isomerases (1)
	Lyases (1)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (122)
	Cyclic (69)
	Octahedral (1)

SCOP Classification

	All beta proteins (48)
	Alpha and beta proteins (a/b) (32)
	Artifacts (27)
	Alpha and beta proteins (a+b) (19)
	All alpha proteins (11)
	Peptides (4)
	Coiled coil proteins (1)
	Small proteins (1)

AllSelected

1 to 25 of 182 Structures

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1BJW \| pdb_00001bjw	Download File View File

ASPARTATE AMINOTRANSFERASE FROM THERMUS THERMOPHILUS

Nakai, T., Okada, K., Kuramitsu, S., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1999) Biochemistry 38: 2413-2424

Released	1999-07-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ASPARTATE AMINOTRANSFERASE (protein)
Unique Ligands	PO4

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1BKG \| pdb_00001bkg	Download File View File

ASPARTATE AMINOTRANSFERASE FROM THERMUS THERMOPHILUS WITH MALEATE

Nakai, T., Okada, K., Kuramitsu, S., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1999) Biochemistry 38: 2413-2424

Released	1999-07-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ASPARTATE AMINOTRANSFERASE (protein)
Unique Ligands	MAE, PMP

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1D2M \| pdb_00001d2m	Download File View File

UVRB PROTEIN OF THERMUS THERMOPHILUS HB8; A NUCLEOTIDE EXCISION REPAIR ENZYME

Nakagawa, N., Sugahara, M., Masui, R., Kato, R., Fukuyama, K., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1999) J Biochem 126: 986-990

Released	2000-03-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus HB8
Macromolecule	EXCINUCLEASE ABC SUBUNIT B (protein)
Unique Ligands	BOG, SO4

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1EE8 \| pdb_00001ee8	Download File View File

CRYSTAL STRUCTURE OF MUTM (FPG) PROTEIN FROM THERMUS THERMOPHILUS HB8

Sugahara, M., Mikawa, T., Kumasaka, T., Yamamoto, M., Kato, R., Fukuyama, K., Inoue, Y., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2000) EMBO J 19: 3857-3869

Released	2001-01-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus HB8
Macromolecule	MUTM (FPG) PROTEIN (protein)
Unique Ligands	ZN

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1GC3 \| pdb_00001gc3	Download File View File

THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE TETRA MUTANT 2 COMPLEXED WITH TRYPTOPHAN

Ura, H., Nakai, T., Hirotsu, K., Kuramitsu, S.

(2001) J Biochem 130: 89-98

Released	2001-09-05
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ASPARTATE AMINOTRANSFERASE (protein)
Unique Ligands	PLP, TRP

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1GC4 \| pdb_00001gc4	Download File View File

THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE TETRA MUTANT 2 COMPLEXED WITH ASPARTATE

Ura, H., Nakai, T., Hirotsu, K., Kuramitsu, S.

(2001) J Biochem 130: 89-98

Released	2001-09-05
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ASPARTATE AMINOTRANSFERASE (protein)
Unique Ligands	ASP, PLP

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1GCK \| pdb_00001gck	Download File View File

THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE DOUBLE MUTANT 1 COMPLEXED WITH ASPARTATE

Ura, H., Nakai, T., Hirotsu, K., Kuramitsu, S.

(2001) J Biochem 130: 89-98

Released	2001-11-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ASPARTATE AMINOTRANSFERASE (protein)
Unique Ligands	ASP, PLP

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1IU1 \| pdb_00001iu1	Download File View File

Crystal structure of human gamma1-adaptin ear domain

Nogi, T., Shiba, Y., Kawasaki, M., Shiba, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Takatsu, H., Nakayama, K., Wakatsuki, S.

(2002) Nat Struct Biol 9: 527-531

Released	2002-07-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	gamma1-adaptin (protein)

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1J2J \| pdb_00001j2j	Download File View File

Crystal structure of GGA1 GAT N-terminal region in complex with ARF1 GTP form

Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.

(2003) Nat Struct Biol 10: 386-393

Released	2003-05-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	ADP-ribosylation factor 1 (protein) ADP-ribosylation factor binding protein GGA1 (protein)
Unique Ligands	GTP, IOD, MG

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1JWF \| pdb_00001jwf	Download File View File

Crystal Structure of human GGA1 VHS domain.

Shiba, T., Takatsu, H., Nogi, T., Matsugaki, N., Kawasaki, M., Igarashi, N., Suzuki, M., Kato, R., Earnest, T., Nakayama, K., Wakatsuki, S.

(2002) Nature 415: 937-941

Released	2002-03-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor binding protein GGA1 (protein)

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1JWG \| pdb_00001jwg	Download File View File

VHS Domain of human GGA1 complexed with cation-independent M6PR C-terminal Peptide

Shiba, T., Takatsu, H., Nogi, T., Matsugaki, N., Kawasaki, M., Igarashi, N., Suzuki, M., Kato, R., Earnest, T., Nakayama, K., Wakatsuki, S.

(2002) Nature 415: 937-941

Released	2002-03-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor binding protein GGA1 (protein) Cation-independent mannose-6-phosphate receptor (protein)
Unique Ligands	IOD

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1KZK \| pdb_00001kzk	Download File View File

JE-2147-HIV Protease Complex

Reiling, K.K., Endres, N.F., Dauber, D.S., Craik, C.S., Stroud, R.M.

(2002) Biochemistry 41: 4582-4594

Released	2002-04-03
Method	X-RAY DIFFRACTION 1.09 Å
Organisms	Human immunodeficiency virus
Macromolecule	Protease (protein)
Unique Ligands	CL, EDO, JE2

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1O3X \| pdb_00001o3x	Download File View File

Crystal structure of human GGA1 GAT domain

Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.

(2003) Nat Struct Biol 10: 386-393

Released	2003-05-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor binding protein GGA1 (protein)

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1O3Y \| pdb_00001o3y	Download File View File

Crystal structure of mouse ARF1 (delta17-Q71L), GTP form

Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.

(2003) Nat Struct Biol 10: 386-393

Released	2003-05-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mus musculus
Macromolecule	ADP-ribosylation factor 1 (protein)
Unique Ligands	GTP, MG

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1SNT \| pdb_00001snt	Download File View File

Structure of the human cytosolic sialidase Neu2

Chavas, L.M.G., Fusi, P., Tringali, C., Venerando, B., Tettamanti, G., Kato, R., Monti, E., Wakatsuki, S.

(2005) J Biological Chem 280: 469-475

Released	2004-11-02
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Sialidase 2 (protein)

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1SO7 \| pdb_00001so7	Download File View File

Maltose-induced structure of the human cytolsolic sialidase Neu2

Chavas, L.M.G., Fusi, P., Tringali, C., Venerando, B., Tettamanti, G., Kato, R., Monti, E., Wakatsuki, S.

(2005) J Biological Chem 280: 469-475

Released	2004-11-02
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Homo sapiens
Macromolecule	Sialidase 2 (protein)
Unique Ligands	CL

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1TCG \| pdb_00001tcg	Download File View File

STRUCTURE-ACTIVITY RELATIONSHIPS OF MU-CONOTOXIN GIIIA: STRUCTURE DETERMINATION OF ACTIVE AND INACTIVE SODIUM CHANNEL BLOCKER PEPTIDES BY NMR AND SIMULATED ANNEALING CALCULATIONS

Kohda, D., Lancelin, J.-M., Inagaki, F., Wakamatsu, K.

(1992) Biochemistry 31: 12577-12584

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Conus geographus
Macromolecule	MU-CONOTOXIN GIIIA (protein)

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1TCH \| pdb_00001tch	Download File View File

STRUCTURE-ACTIVITY RELATIONSHIPS OF MU-CONOTOXIN GIIIA: STRUCTURE DETERMINATION OF ACTIVE AND INACTIVE SODIUM CHANNEL BLOCKER PEPTIDES BY NMR AND SIMULATED ANNEALING CALCULATIONS

Lancelin, J.-M., Kohda, D., Inagaki, F.

(1992) Biochemistry 31: 12577-12584

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Conus geographus
Macromolecule	MU-CONOTOXIN GIIIA (protein)

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1TCJ \| pdb_00001tcj	Download File View File

STRUCTURE-ACTIVITY RELATIONSHIPS OF MU-CONOTOXIN GIIIA: STRUCTURE DETERMINATION OF ACTIVE AND INACTIVE SODIUM CHANNEL BLOCKER PEPTIDES BY NMR AND SIMULATED ANNEALING CALCULATIONS

Kohda, D., Lancelin, J.-M., Inagaki, F., Wakamatsu, K.

(1992) Biochemistry 31: 12577-12584

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Conus geographus
Macromolecule	MU-CONOTOXIN GIIIA (protein)

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1TCK \| pdb_00001tck	Download File View File

STRUCTURE-ACTIVITY RELATIONSHIPS OF MU-CONOTOXIN GIIIA: STRUCTURE DETERMINATION OF ACTIVE AND INACTIVE SODIUM CHANNEL BLOCKER PEPTIDES BY NMR AND SIMULATED ANNEALING CALCULATIONS

Lancelin, J.-M., Kohda, D., Inagaki, F.

(1992) Biochemistry 31: 12577-12584

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Conus geographus
Macromolecule	MU-CONOTOXIN GIIIA (protein)

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1V82 \| pdb_00001v82	Download File View File

Crystal structure of human GlcAT-P apo form

Kakuda, S., Shiba, T., Ishiguro, M., Tagawa, H., Oka, S., Kajihara, Y., Kawasaki, T., Wakatsuki, S., Kato, R.

(2004) J Biological Chem 279: 22693-22703

Released	2004-05-25
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 (protein)
Unique Ligands	TLA

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1V83 \| pdb_00001v83	Download File View File

Crystal structure of human GlcAT-P in complex with Udp and Mn2+

Kakuda, S., Shiba, T., Ishiguro, M., Tagawa, H., Oka, S., Kajihara, Y., Kawasaki, T., Wakatsuki, S., Kato, R.

(2004) J Biological Chem 279: 22693-22703

Released	2004-05-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 (protein)
Unique Ligands	MN, TLA, UDP

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1V84 \| pdb_00001v84	Download File View File

Crystal structure of human GlcAT-P in complex with N-acetyllactosamine, Udp, and Mn2+

Kakuda, S., Shiba, T., Ishiguro, M., Tagawa, H., Oka, S., Kajihara, Y., Kawasaki, T., Wakatsuki, S., Kato, R.

(2004) J Biological Chem 279: 22693-22703

Released	2004-05-25
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 (protein)
Unique Ligands	MN, TLA, UDP
Unique branched monosaccharides	GAL, NAG, NDG

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1VCU \| pdb_00001vcu	Download File View File

Structure of the human cytosolic sialidase Neu2 in complex with the inhibitor DANA

Chavas, L.M.G., Fusi, P., Tringali, C., Venerando, B., Tettamanti, G., Kato, R., Monti, E., Wakatsuki, S.

(2005) J Biological Chem 280: 469-475

Released	2004-11-02
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	Sialidase 2 (protein)
Unique Ligands	DAN, EPE

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1WR6 \| pdb_00001wr6	Download File View File

Crystal structure of GGA3 GAT domain in complex with ubiquitin

Kawasaki, M., Shiba, T., Shiba, Y., Yamaguchi, Y., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Kato, K., Nakayama, K., Wakatsuki, S.

(2005) Genes Cells 10: 639-654

Released	2005-06-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	ADP-ribosylation factor binding protein GGA3 (protein) ubiquitin (protein)

1 to 25 of 182 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BJW | pdb_00001bjw

1BKG | pdb_00001bkg

1D2M | pdb_00001d2m

1EE8 | pdb_00001ee8

1GC3 | pdb_00001gc3

1GC4 | pdb_00001gc4

1GCK | pdb_00001gck

1IU1 | pdb_00001iu1

1J2J | pdb_00001j2j

1JWF | pdb_00001jwf

1JWG | pdb_00001jwg

1KZK | pdb_00001kzk

1O3X | pdb_00001o3x

1O3Y | pdb_00001o3y

1SNT | pdb_00001snt

1SO7 | pdb_00001so7

1TCG | pdb_00001tcg

1TCH | pdb_00001tch

1TCJ | pdb_00001tcj

1TCK | pdb_00001tck

1V82 | pdb_00001v82

1V83 | pdb_00001v83

1V84 | pdb_00001v84

1VCU | pdb_00001vcu

1WR6 | pdb_00001wr6