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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kelly, J."

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Homo sapiens (10)
	Enterovirus A71 (6)
	Rattus norvegicus (4)
	Campylobacter jejuni (1)
	Enterovirus E (1)
	Operophtera brumata cypovirus 18 (1)

Taxonomy

	Eukaryota (14)
	Riboviria (8)
	Bacteria (1)

Experimental Method

X-RAY DIFFRACTION (23)

Polymer Entity Type

Protein (23)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (6)
	2.0 - 2.5 (5)
	2.5 - 3.0 (7)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (8)
	2015 - 2019 (4)
	2020 - 2024 (8)

Enzyme Classification Name

	Hydrolases (7)
	Transferases (6)

Symmetry Type

	Asymmetric (12)
	Icosahedral (7)
	Cyclic (4)

SCOP Classification

	All beta proteins (10)
	Alpha and beta proteins (a+b) (7)

AllSelected

1 to 23 of 23 Structures

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2NQG \| pdb_00002nqg	Download File View File

Calpain 1 proteolytic core inactivated by WR18(S,S), an epoxysuccinyl-type inhibitor.

Cuerrier, D., Davies, P.L., Campbell, R.L., Moldoveanu, T.

(2007) J Biological Chem 282: 9600-9611

Released	2007-01-09
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Rattus norvegicus
Macromolecule	Calpain-1 catalytic subunit (protein)
Unique Ligands	CA, NQG

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2NQI \| pdb_00002nqi	Download File View File

Calpain 1 proteolytic core inactivated by WR13(R,R), an epoxysuccinyl-type inhibitor.

Cuerrier, D., Davies, P.L., Campbell, R.L., Moldoveanu, T.

(2007) J Biological Chem 282: 9600-9611

Released	2007-01-09
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Rattus norvegicus
Macromolecule	Calpain-1 catalytic subunit (protein)
Unique Ligands	CA, NQI

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3BFP \| pdb_00003bfp	Download File View File

Crystal Structure of apo-PglD from Campylobacter jejuni

Rangarajan, E.S., Watson, D.C., Leclerc, S., Proteau, A., Cygler, M., Matte, A., Young, N.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2008) Biochemistry 47: 1827-1836

Released	2008-01-22
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Campylobacter jejuni
Macromolecule	Acetyltransferase (protein)
Unique Ligands	FLC

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4BSV \| pdb_00004bsv	Download File View File

Heterodimeric Fc Antibody Azymetric Variant 1

Suits, M.D.L., Spreter, T., Cabrera, E.E., Dixit, S.B., Lario, P.I., Poon, D.K.Y., D'Angelo, I.E.P., Boulanger, M.J.

(2013) MAbs 5: 646

Released	2013-08-21
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	HETERODIMERIC FC ANTIBODY AZYMETRIC VARIANT 2 (protein)
Unique Ligands	EDO, IOD
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG

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4BSW \| pdb_00004bsw	Download File View File

Heterodimeric Fc Antibody Azymetric Variant 2

Suits, M.D.L., Spreter, T., Cabrera, E.E., Dixit, S.B., Lario, P.I., Poon, D.K.Y., D'Angelo, I.E.P., Boulanger, M.J.

(2013) MAbs 5: 646

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	HETERODIMERIC FC ANTIBODY AZYMETRIC VARIANT 2 (protein)
Unique Ligands	EDO, IOD
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG

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4CDQ \| pdb_00004cdq	Download File View File

Crystal structure of human Enterovirus 71 in complex with the uncoating inhibitor GPP2

DeColibus, L., Wang, X., Spyrou, J.A.B., Kelly, J., Ren, J., Grimes, J., Puerstinger, G., Stonehouse, N., Walter, T.S., Hu, Z., Wang, J., Li, X., Peng, W., Rowlands, D., Fry, E.E., Rao, Z., Stuart, D.I.

(2014) Nat Struct Mol Biol 21: 282

Released	2014-02-12
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Enterovirus A71
Macromolecule	VP1 (protein) VP2 (protein) VP3 (protein) VP4 (protein)
Unique Ligands	7VR, NA

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4CDU \| pdb_00004cdu	Download File View File

Crystal structure of human Enterovirus 71 in complex with the uncoating inhibitor GPP3

De Colibus, L., Wang, X., Spyrou, J.A.B., Kelly, J., Ren, J., Grimes, J., Puerstinger, G., Stonehouse, N., Walter, T.S., Hu, Z., Wang, J., Li, X., Peng, W., Rowlands, D., Fry, E.E., Rao, Z., Stuart, D.I.

(2014) Nat Struct Mol Biol 21: 282

Released	2014-02-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Enterovirus A71
Macromolecule	VP1 (protein) VP2 (protein) VP3 (protein) VP4 (protein)
Unique Ligands	CL, NA, YM2

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4CDW \| pdb_00004cdw	Download File View File

Crystal structure of human Enterovirus 71 in complex with the uncoating inhibitor GPP4

De Colibus, L., Wang, X., Spyrou, J.A.B., Kelly, J., Ren, J., Grimes, J., Puerstinger, G., Stonehouse, N., Walter, T.S., Hu, Z., Wang, J., Li, X., Peng, W., Rowlands, D., Fry, E.E., Rao, Z., Stuart, D.I.

(2014) Nat Struct Mol Biol 21: 282

Released	2014-02-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Enterovirus A71
Macromolecule	VP1 (protein) VP2 (protein) VP3 (protein) VP4 (protein)
Unique Ligands	NA, VR2

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4CDX \| pdb_00004cdx	Download File View File

Crystal structure of human Enterovirus 71 in complex with the uncoating inhibitor GPP12

De Colibus, L., Wang, X., Spyrou, J.A.B., Kelly, J., Ren, J., Grimes, J., Puerstinger, G., Stonehouse, N., Walter, T.S., Hu, Z., Wang, J., Li, X., Peng, W., Rowlands, D., Fry, E.E., Rao, Z., Stuart, D.I.

(2014) Nat Struct Mol Biol 21: 282

Released	2014-02-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Enterovirus A71
Macromolecule	VP1 (protein) VP2 (protein) VP3 (protein) VP4 (protein)
Unique Ligands	JF0, NA

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4CEW \| pdb_00004cew	Download File View File

Crystal structure of human Enterovirus 71 in complex with the uncoating inhibitor ALD

De Colibus, L., Wang, X., Spyrou, J.A.B., Kelly, J., Ren, J., Grimes, J., Puerstinger, G., Stonehouse, N., Walter, T.S., Hu, Z., Wang, J., Li, X., Peng, W., Rowlands, D., Fry, E.E., Rao, Z., Stuart, D.I.

(2014) Nat Struct Mol Biol 21: 282

Released	2014-02-12
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Enterovirus A71
Macromolecule	VP1 (protein) VP2 (protein) VP3 (protein) VP4 (protein)
Unique Ligands	7J5

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4CEY \| pdb_00004cey	Download File View File

Crystal structure of human Enterovirus 71 in complex with the uncoating inhibitor NLD

De Colibus, L., Wang, X., Spyrou, J.A.B., Kelly, J., Ren, J., Grimes, J., Puerstinger, G., Stonehouse, N., Walter, T.S., Hu, Z., Wang, J., Li, X., Peng, W., Rowlands, D., Fry, E.E., Rao, Z., Stuart, D.I.

(2014) Nat Struct Mol Biol 21: 282

Released	2014-02-12
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Enterovirus A71
Macromolecule	VP1 (protein) VP2 (protein) VP3 (protein) VP4 (protein)
Unique Ligands	906, NA

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5MQW \| pdb_00005mqw	Download File View File

High-speed fixed-target serial virus crystallography

Roedig, P., Ginn, H.M., Pakendorf, T., Sutton, G., Harlos, K., Walter, T.S., Meyer, J., Fischer, P., Duman, R., Vartiainen, I., Reime, B., Warmer, M., Brewster, A.S., Young, I.D., Michels-Clark, T., Sauter, N.K., Sikorsky, M., Nelson, S., Damiani, D.S., Alonso-Mori, R., Ren, J., Fry, E.E., David, C., Stuart, D.I., Wagner, A., Meents, A.

(2017) Nat Methods 14: 805-810

Released	2017-06-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Operophtera brumata cypovirus 18
Macromolecule	Polyhedrin (protein)
Unique Ligands	ATP, CL, GTP, MG

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5OSN \| pdb_00005osn	Download File View File

Crystal Structure of Bovine Enterovirus 2 determined with Serial Femtosecond X-ray Crystallography

Roedig, P., Ginn, H.M., Pakendorf, T., Sutton, G., Harlos, K., Walter, T.S., Meyer, J., Fischer, P., Duman, R., Vartiainen, I., Reime, B., Warmer, M., Brewster, A.S., Young, I.D., Michels-Clark, T., Sauter, N.K., Kotecha, A., Kelly, J., Rowlands, D.J., Sikorsky, M., Nelson, S., Damiani, D.S., Alonso-Mori, R., Ren, J., Fry, E.E., David, C., Stuart, D.I., Wagner, A., Meents, A.

(2017) Nat Methods 14: 805-810

Released	2017-08-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Enterovirus E
Macromolecule	Capsid protein (protein)
Unique Ligands	GLU, K, OSF, SO4, SPH

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6CPW \| pdb_00006cpw	Download File View File

Discovery of 3(S)-thiomethyl pyrrolidine ERK inhibitors for oncology

Hruza, A., Hruza, A.

(2018) Bioorg Med Chem Lett 28: 2029-2034

Released	2018-05-23
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Rattus norvegicus
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	F8V, SO4

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6DCG \| pdb_00006dcg	Download File View File

Discovery of MK-8353: An Orally Bioavailable Dual Mechanism ERK Inhibitor for Oncology

Boga, S.B., Deng, Y., Zhu, L., Nan, Y., Cooper, A., Shipps Jr., G.W., Doll, R., Shih, N., Zhu, H., Sun, R., Wang, T., Paliwal, S., Tsui, H., Gao, X., Yao, X., Desai, J., Wang, J., Alhassan, A.B., Kelly, J., Patel, M., Muppalla, K., Gudipati, S., Zhang, L., Buevich, A., Hesk, D., Carr, D., Dayananth, P., Mei, H., Cox, K., Sherborne, B., Hruza, A.W., Xiao, L., Jin, W., Long, B., Liu, G., Taylor, S.A., Kirschmeier, P., Windsor, W.T., Bishop, R., Samatar, A.A.

(2018) ACS Med Chem Lett 9: 761-767

Released	2018-08-08
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Rattus norvegicus
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	G67, SO4

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6WBW \| pdb_00006wbw	Download File View File

Structure of Human HDAC2 in complex with an ethyl ketone inhibitor

Klein, D.J., Yu, W.

(2020) Bioorg Med Chem Lett 30: 127197-127197

Released	2020-05-06
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 2 (protein)
Unique Ligands	CA, PEG, TV1, ZN

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6WBZ \| pdb_00006wbz	Download File View File

Structure of Human HDAC2 in complex with an ethyl ketone inhibitor containing a spiro-bicyclic group

Klein, D.J., Yu, W.

(2020) Bioorg Med Chem Lett 30: 127197-127197

Released	2020-05-06
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 2 (protein)
Unique Ligands	CA, PEG, SO4, TV7, ZN

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6X3N \| pdb_00006x3n	Download File View File

Co-structure of BTK kinase domain with L-005085737 inhibitor

Fischmann, T.O.

(2020) Bioorg Med Chem Lett 30: 127390-127390

Released	2020-07-22
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase BTK (protein)
Unique Ligands	5WE, ULV

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6X3O \| pdb_00006x3o	Download File View File

Co-structure of BTK kinase domain with L-005191930 inhibitor

Fischmann, T.O.

(2020) Bioorg Med Chem Lett 30: 127390-127390

Released	2020-07-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase BTK (protein)
Unique Ligands	5WE, ULY

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6X3P \| pdb_00006x3p	Download File View File

Co-structure of BTK kinase domain with L-005298385 inhibitor

Fischmann, T.O.

(2020) Bioorg Med Chem Lett 30: 127390-127390

Released	2020-07-22
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase BTK (protein)
Unique Ligands	BTB, EDO, UM4

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6XDM \| pdb_00006xdm	Download File View File

STRUCTURE OF HUMAN HDAC2 IN COMPLEX WITH AN ARYL KETONE INHIBITOR

Klein, D.J., Liu, J.

(2020) ACS Med Chem Lett 11: 1476-1483

Released	2020-07-29
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 2 (protein)
Unique Ligands	CA, PEG, SO4, V1D, ZN

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7KBG \| pdb_00007kbg	Download File View File

Structure of Human HDAC2 in complex with a 2-substituted benzamide inhibitor (compound 20)

Klein, D.J., Liu, J.

(2020) ACS Med Chem Lett 11: 2476-2483

Released	2020-12-30
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 2 (protein)
Unique Ligands	CA, DMS, PEG, SO4, WBA, WBD, ZN