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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kidera, A."

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Homo sapiens (9)
	Gallus gallus (7)
	Mus musculus (3)
	Halobacterium salinarum (2)
	Escherichia coli (1)
	Escherichia coli K-12 (1)

Taxonomy

	Eukaryota (19)
	Archaea (2)
	Bacteria (2)

Experimental Method

	X-RAY DIFFRACTION (17)
	SOLUTION NMR (4)
	ELECTRON CRYSTALLOGRAPHY (2)

Polymer Entity Type

	Protein (23)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (8)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (12)
	2005 - 2009 (4)
	2015 - 2019 (5)

Enzyme Classification Name

	Hydrolases (15)
	Transferases (2)

Membrane Protein Annotation

	MemProtMD (2)
	PDBTM (2)
	mpstruc (1)

Symmetry Type

	Asymmetric (21)
	Cyclic (2)

SCOP Classification

	Alpha and beta proteins (a+b) (16)
	All alpha proteins (2)
	Membrane and cell surface proteins and peptides (2)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 23 of 23 Structures

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1AT9 \| pdb_00001at9	Download File View File

STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM DETERMINED BY ELECTRON CRYSTALLOGRAPHY

Kimura, Y., Vassylyev, D.G., Miyazawa, A., Kidera, A., Matsushima, M., Mitsuoka, K., Murata, K., Hirai, T., Fujiyoshi, Y.

(1997) Nature 389: 206-211

Released	1998-09-16
Method	ELECTRON CRYSTALLOGRAPHY 2.8 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	RET

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1IWT \| pdb_00001iwt	Download File View File

Crystal Structure Analysis of Human lysozyme at 113K.

Joti, Y., Nakasako, M., Kidera, A., Go, N.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1421-1432

Released	2002-09-04
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL

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1IWU \| pdb_00001iwu	Download File View File

Crystal Structure Analysis of Human lysozyme at 127K.

Joti, Y., Nakasako, M., Kidera, A., Go, N.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1421-1432

Released	2002-09-04
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL

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1IWV \| pdb_00001iwv	Download File View File

Crystal Structure Analysis of Human lysozyme at 147K.

Joti, Y., Nakasako, M., Kidera, A., Go, N.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1421-1432

Released	2002-09-04
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL

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1IWW \| pdb_00001iww	Download File View File

Crystal Structure Analysis of Human lysozyme at 152K.

Joti, Y., Nakasako, M., Kidera, A., Go, N.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1421-1432

Released	2002-09-04
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL

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1IWX \| pdb_00001iwx	Download File View File

Crystal Structure Analysis of Human lysozyme at 161K.

Joti, Y., Nakasako, M., Kidera, A., Go, N.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1421-1432

Released	2002-09-04
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL

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1IWY \| pdb_00001iwy	Download File View File

Crystal Structure Analysis of Human lysozyme at 170K.

Joti, Y., Nakasako, M., Kidera, A., Go, N.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1421-1432

Released	2002-09-04
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL

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1IWZ \| pdb_00001iwz	Download File View File

Crystal Structure Analysis of Human lysozyme at 178K.

Joti, Y., Nakasako, M., Kidera, A., Go, N.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1421-1432

Released	2002-09-04
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL

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1VDP \| pdb_00001vdp	Download File View File

The crystal structure of the monoclinic form of hen egg white lysozyme at 1.7 angstroms resolution in space

Aibara, S., Suzuki, A., Kidera, A., Shibata, K., Yamane, T., DeLucas, L.J., Hirose, M.

To be published

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)

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1VDQ \| pdb_00001vdq	Download File View File

The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.5 angstroms resolution

Aibara, S., Suzuki, A., Kidera, A., Shibata, K., Yamane, T., DeLucas, L.J., Hirose, M.

To be published

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)

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1VDS \| pdb_00001vds	Download File View File

The crystal structure of the tetragonal form of hen egg white lysozyme at 1.6 angstroms resolution in space

Aibara, S., Suzuki, A., Kidera, A., Shibata, K., Yamane, T., DeLucas, L.J., Hirose, M.

To be published

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)

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1VDT \| pdb_00001vdt	Download File View File

The crystal structure of the tetragonal form of hen egg white lysozyme at 1.7 angstroms resolution under basic conditions in space

Aibara, S., Suzuki, A., Kidera, A., Shibata, K., Yamane, T., DeLucas, L.J., Hirose, M.

To be published

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)

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1VED \| pdb_00001ved	Download File View File

The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.9 angstroms resolution in space

Aibara, S., Suzuki, A., Kidera, A., Shibata, K., Yamane, T., DeLucas, L.J., Hirose, M.

To be published

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)

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2AT9 \| pdb_00002at9	Download File View File

STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM BY ELECTRON CRYSTALLOGRAPHY

Mitsuoka, K., Hirai, T., Murata, K., Miyazawa, A., Kidera, A., Kimura, Y., Fujiyoshi, Y.

(1999) J Mol Biology 286: 861-882

Released	1999-04-27
Method	ELECTRON CRYSTALLOGRAPHY 3 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	2DP, RET

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2NOO \| pdb_00002noo	Download File View File

Crystal Structure of Mutant NikA

Addy, C., Ohara, M., Kawai, F., Kidera, A., Ikeguchi, M., Fuchigami, S., Osawa, M., Shimada, I., Park, S.Y., Tame, J.R.H., Heddle, J.G.

(2007) Acta Crystallogr D Biol Crystallogr 63: 221-229

Released	2007-01-23
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli K-12
Macromolecule	Nickel-binding periplasmic protein (protein)
Unique Ligands	IOD, NI

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2RVL \| pdb_00002rvl	Download File View File

Solution structure of the chromodomain of HP1alpha with the N-terminal tail

Kawaguchi, A., Nishimura, Y.

(2016) Sci Rep 6: 22527-22527

Released	2016-03-16
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Chromobox protein homolog 5 (protein)

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2RVM \| pdb_00002rvm	Download File View File

Solution structure of the chromodomain of HP1alpha with the phosphorylated N-terminal tail

Kawaguchi, A., Nishimura, Y.

(2016) Sci Rep 6: 22527-22527

Released	2016-03-16
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Chromobox protein homolog 5 (protein)

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2RVN \| pdb_00002rvn	Download File View File

Solution structure of the chromodomain of HP1a with the phosphorylated N-terminal tail complexed with H3K9me3 peptide

Kawaguchi, A., Nishimura, Y.

(2016) Sci Rep 6: 22527-22527

Released	2016-03-16
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	18-mer peptide of Histone H3 (protein) Chromobox protein homolog 5 (protein)

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2Z33 \| pdb_00002z33	Download File View File

Solution structure of the DNA complex of PhoB DNA-binding/transactivation Domain

Yamane, T., Okamura, H., Ikeguchi, M., Nishimura, Y., Kidera, A.

(2008) Proteins 71: 1970-1983

Released	2008-04-22
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Phosphate regulon transcriptional regulatory protein phoB (protein) 5'-D(APCPAPGPAPTPTPTPAPTPGPAPCPAPGPT)-3' (nucleic acid) 5'-D(APCPTPGPTPCPAPTPAPAPAPTPCPTPGPT)-3' (nucleic acid)

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2ZQ3 \| pdb_00002zq3	Download File View File

The crystal structure of the orthorhombic form of hen egg white lysozyme at 1.6 angstroms resolution

Aibara, S., Suzuki, A., Kidera, A., Shibata, K., Hirose, M.

To be published

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	NA

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2ZQ4 \| pdb_00002zq4	Download File View File

The crystal structure of the orthorhombic form of hen egg white lysozyme at 2.0 angstroms resolution

Aibara, S., Suzuki, A., Kidera, A., Shibata, K., Yamane, T., Hirose, M.

To be published

Released	2008-09-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)

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5WVO \| pdb_00005wvo	Download File View File

Crystal structure of DNMT1 RFTS domain in complex with K18/K23 mono-ubiquitylated histone H3

Ishiyama, S., Nishiyama, A., Nakanishi, M., Arita, K.

(2017) Mol Cell 68: 350-360.e7

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.997 Å
Organisms	Homo sapiens
Macromolecule	DNA (cytosine-5)-methyltransferase 1 (protein) Histone H3.1 (protein) Ubiquitin (protein)
Unique Ligands	ZN