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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kim, S."

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Search Summary

This query matches 475 Structures.

Refinements

Structure Determination Methodology

experimental (475)

Scientific Name of Source Organism

	Homo sapiens (176)
	Escherichia coli (26)
	synthetic construct (17)
	Mus musculus (14)
	Aspergillus fumigatus Af293 (10)
	Escherichia coli K-12 (10)
	Gallus gallus (9)
	Staphylococcus aureus subsp. aureus USA300 (9)
	Drosophila melanogaster (8)
	Klebsiella pneumoniae (8)

More...

Taxonomy

	Eukaryota (274)
	Bacteria (192)
	Riboviria (24)
	other sequences (17)
	unclassified sequences (8)
	Archaea (3)
	Eukaryota (eukaryotes) (2)
	Riboviria (RNA viruses and viroids) (2)
	Duplodnaviria (1)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (404)
	ELECTRON MICROSCOPY (54)
	SOLUTION NMR (15)
	SOLID-STATE NMR (2)

Polymer Entity Type

	Protein (475)
	RNA (4)
	DNA (3)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (17)
	1.5 - 2.0 (128)
	2.0 - 2.5 (129)
	2.5 - 3.0 (98)
	3.0 - 3.5 (53)
	3.5 - 4.0 (27)
	4.0 - 4.5 (5)

Release Date

	1990 - 1994 (6)
	1995 - 1999 (11)
	2000 - 2004 (23)
	2005 - 2009 (19)
	2010 - 2014 (81)
	2015 - 2019 (153)
	2020 - 2024 (165)
	2025 - 2029 (17)

Enzyme Classification Name

	Hydrolases (80)
	Transferases (69)
	Ligases (44)
	Oxidoreductases (49)
	Lyases (22)
	Translocases (9)
	Isomerases (5)

Membrane Protein Annotation

	PDBTM (31)
	mpstruc (15)
	MemProtMD (12)
	OPM (11)

Symmetry Type

	Asymmetric (256)
	Cyclic (183)
	Dihedral (41)
	Icosahedral (6)
	Octahedral (4)
	Tetrahedral (3)

SCOP Classification

	Alpha and beta proteins (a/b) (64)
	Alpha and beta proteins (a+b) (57)
	All beta proteins (48)
	All alpha proteins (33)
	Artifacts (31)
	Multi-domain proteins (alpha and beta) (9)
	Small proteins (2)
	Peptides (3)
	Coiled coil proteins (2)
	Designed proteins (2)

AllSelected

1 to 25 of 475 Structures

Page 1 of 19

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1BIO \| pdb_00001bio	Download File View File

HUMAN COMPLEMENT FACTOR D IN COMPLEX WITH ISATOIC ANHYDRIDE INHIBITOR

Jing, H., Babu, Y.S., Moore, D., Kilpatrick, J.M., Liu, X.-Y., Volanakis, J.E., Narayana, S.V.L.

(1998) J Mol Biology 282: 1061-1081

Released	1999-06-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	COMPLEMENT FACTOR D (protein)
Unique Ligands	GOL, SOA

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1C9B \| pdb_00001c9b	Download File View File

CRYSTAL STRUCTURE OF A HUMAN TBP CORE DOMAIN-HUMAN TFIIB CORE DOMAIN COMPLEX BOUND TO AN EXTENDED, MODIFIED ADENOVIRAL MAJOR LATE PROMOTER (ADMLP)

Tsai, F.T.F., Sigler, P.B.

(2000) EMBO J 19: 25-36

Released	2000-01-10
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	GENERAL TRANSCRIPTION FACTOR IIB (protein) TATA BOX BINDING PROTEIN (protein) ADMLP TATA-BOX DNA CONTAINING IIB RECOGNITION ELEMENT (nucleic acid)

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1DST \| pdb_00001dst	Download File View File

MUTANT OF FACTOR D WITH ENHANCED CATALYTIC ACTIVITY

Narayana, S.V.L., Volanakis, J.E.

(1995) J Biological Chem 270: 24399-24405

Released	1996-07-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	FACTOR D (protein)

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1DU3 \| pdb_00001du3	Download File View File

Crystal structure of TRAIL-SDR5

Cha, S.-S., Sung, B.-J., Oh, B.-H.

(2000) J Biological Chem 275: 31171-31177

Released	2000-09-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	DEATH RECEPTOR 5 (protein) TNF-RELATED APOPTOSIS INDUCING LIGAND (protein)
Unique Ligands	ZN

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1EUJ \| pdb_00001euj	Download File View File

A NOVEL ANTI-TUMOR CYTOKINE CONTAINS A RNA-BINDING MOTIF PRESENT IN AMINOACYL-TRNA SYNTHETASES

Kim, Y., Shin, J., Li, R., Cheong, C., Kim, S.

(2000) J Biological Chem 275: 27062-27068

Released	2000-09-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	ENDOTHELIAL MONOCYTE ACTIVATING POLYPEPTIDE 2 (protein)

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1FI6 \| pdb_00001fi6	Download File View File

SOLUTION STRUCTURE OF THE REPS1 EH DOMAIN

Kim, S., Baleja, J.D.

(2001) Biochemistry 40: 6776-6785

Released	2001-07-18
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	EH DOMAIN PROTEIN REPS1 (protein)
Unique Ligands	CA

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1FYJ \| pdb_00001fyj	Download File View File

SOLUTION STRUCTURE OF MULTI-FUNCTIONAL PEPTIDE MOTIF-1 PRESENT IN HUMAN GLUTAMYL-PROLYL TRNA SYNTHETASE (EPRS).

Jeong, E.-J., Hwang, G.-S., Kim, K.H., Kim, M.J., Kim, S., Kim, K.-S.

(2000) Biochemistry 39: 15775-15782

Released	2001-03-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	MULTIFUNCTIONAL AMINOACYL-TRNA SYNTHETASE (protein)

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1HFD \| pdb_00001hfd	Download File View File

HUMAN COMPLEMENT FACTOR D IN A P21 CRYSTAL FORM

Jing, H., Babu, Y.S., Moore, D., Kilpatrick, J.M., Liu, X.-Y., Volanakis, J.E., Narayana, S.V.L.

(1998) J Mol Biology 282: 1061-1081

Released	1999-06-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	COMPLEMENT FACTOR D (protein)

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1HP7 \| pdb_00001hp7	Download File View File

A 2.1 ANGSTROM STRUCTURE OF AN UNCLEAVED ALPHA-1-ANTITRYPSIN SHOWS VARIABILITY OF THE REACTIVE CENTER AND OTHER LOOPS

Kim, S.-J., Woo, J.-R., Seo, E.J., Yu, M.-H., Ryu, S.-E.

(2001) J Mol Biology 306: 109-119

Released	2001-03-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-1-ANTITRYPSIN (protein)
Unique Ligands	BME, ZN

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1I69 \| pdb_00001i69	Download File View File

CRYSTAL STRUCTURE OF THE REDUCED FORM OF OXYR

Choi, H., Kim, S., Ryu, S.

(2001) Cell 105: 103-113

Released	2001-09-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	HYDROGEN PEROXIDE-INDUCIBLE GENES ACTIVATOR (protein)
Unique Ligands	BEZ

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1I6A \| pdb_00001i6a	Download File View File

CRYSTAL STRUCTURE OF THE OXIDIZED FORM OF OXYR

Choi, H., Kim, S., Ryu, S.

(2001) Cell 105: 103-113

Released	2001-09-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	HYDROGEN PEROXIDE-INDUCIBLE GENES ACTIVATOR (protein)

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1JE4 \| pdb_00001je4	Download File View File

Solution structure of the monomeric variant of the chemokine MIP-1beta

Kim, S., Jao, S., Laurence, J.S., LiWang, P.J.

(2001) Biochemistry 40: 10782-10791

Released	2001-10-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	macrophage inflammatory protein 1-beta (protein)

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1KEH \| pdb_00001keh	Download File View File

Precursor structure of cephalosporin acylase

Kim, Y., Kim, S.

(2002) J Biological Chem 277: 2823-2829

Released	2002-05-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Brevundimonas diminuta
Macromolecule	precursor of cephalosporin acylase (protein)

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1LA4 \| pdb_00001la4	Download File View File

Solution Structure of SGTx1

Lee, C.W., Roh, S.H., Kim, S., Endoh, H., Kodera, Y., Maeda, T., Swartz, K.J., Kim, J.I.

(2004) Biochemistry 43: 890-897

Released	2003-11-11
Method	SOLUTION NMR
Organisms	Stromatopelma calceatum griseipes
Macromolecule	SGTx1 (protein)

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1MEC \| pdb_00001mec	Download File View File

CONFORMATIONAL VARIABILITY OF A PICORNAVIRUS CAPSID: PH-DEPENDENT STRUCTURAL CHANGES OF MENGO VIRUS RELATED TO ITS HOST RECEPTOR ATTACHMENT SITE AND DISASSEMBLY

Rossmann, M.G.

(1990) Virology 175: 176-190

Released	1994-01-31
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Mengo virus
Macromolecule	MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) (protein) MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) (protein)
Unique Ligands	PO4

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1MIT \| pdb_00001mit	Download File View File

RECOMBINANT CUCURBITA MAXIMA TRYPSIN INHIBITOR V (RCMTI-V) (NMR, MINIMIZED AVERAGE STRUCTURE)

Cai, M., Gong, Y., Huang, Y., Liu, J., Prakash, O., Wen, L., Wen, J.J., Huang, J.-K., Krishnamoorthi, R.

(1996) Biochemistry 35: 1516-1524

Released	1996-04-03
Method	SOLUTION NMR
Organisms	Cucurbita maxima
Macromolecule	TRYPSIN INHIBITOR V (protein)

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1MP6 \| pdb_00001mp6	Download File View File

Structure of the transmembrane region of the M2 protein H+ channel by solid state NMR spectroscopy

Wang, J., Kim, S., Kovacs, F., Cross, T.A.

(2001) Protein Sci 10: 2241-2250

Released	2002-09-25
Method	SOLID-STATE NMR
Organisms	Influenza A virus (strain A/Udorn/307/1972 H3N2)
Macromolecule	Matrix protein M2 (protein)

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1MZL \| pdb_00001mzl	Download File View File

MAIZE NONSPECIFIC LIPID TRANSFER PROTEIN

Shin, D.H., Lee, J.Y., Hwang, K.Y., Kim, K.K., Suh, S.W.

(1995) Structure 3: 189-199

Released	1996-08-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Zea mays
Macromolecule	MAIZE NONSPECIFIC LIPID TRANSFER PROTEIN (protein)

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1MZM \| pdb_00001mzm	Download File View File

MAIZE NONSPECIFIC LIPID TRANSFER PROTEIN COMPLEXED WITH PALMITATE

Lee, J.Y., Shin, D.H., Suh, S.W.

(1995) Structure 3: 189-199

Released	1996-08-01
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Zea mays
Macromolecule	MAIZE NONSPECIFIC LIPID TRANSFER PROTEIN (protein)
Unique Ligands	FMT, PLM

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1NYJ \| pdb_00001nyj	Download File View File

The closed state structure of M2 protein H+ channel by solid state NMR spectroscopy

Nishimura, K., Kim, S., Zhang, L., Cross, T.A.

(2002) Biochemistry 41: 13170-13177

Released	2003-03-25
Method	SOLID-STATE NMR
Organisms	Influenza A virus (strain A/USSR/90/1977 H1N1)
Macromolecule	Matrix protein M2 (protein)

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1OIL \| pdb_00001oil	Download File View File

STRUCTURE OF LIPASE

Kim, K.K., Song, H.K., Shin, D.H., Suh, S.W.

(1997) Structure 5: 173-185

Released	1997-05-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Burkholderia cepacia
Macromolecule	LIPASE (protein)
Unique Ligands	CA

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1P68 \| pdb_00001p68	Download File View File

Solution structure of S-824, a de novo designed four helix bundle

Wei, Y., Kim, S., Fela, D., Baum, J., Hecht, M.H.

(2003) Proc Natl Acad Sci U S A 100: 13270-13273

Released	2003-11-11
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	De novo designed protein S-824 (protein)

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1PUL \| pdb_00001pul	Download File View File

Solution structure for the 21KDa caenorhabditis elegans protein CE32E8.3. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET WR33

Tejero, R., Aramini, J.M., Swapna, G.V.T., Monleon, D., Chiang, Y., Macapagal, D., Gunsalus, K.C., Kim, S., Szyperski, T., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)

(2004) J Biomol NMR 28: 91-92

Released	2005-06-21
Method	SOLUTION NMR
Organisms	Caenorhabditis elegans
Macromolecule	Hypothetical protein C32E8.3 in chromosome I (protein)

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1QZY \| pdb_00001qzy	Download File View File

Human Methionine Aminopeptidase in complex with bengamide inhibitor LAF153 and cobalt

Eck, M.J., Song, H.K., Morollo, A.

(2003) J Biological Chem 278: 52964-52971

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Methionine aminopeptidase 2 (protein)
Unique Ligands	CO, TBU, TDE

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1RKJ \| pdb_00001rkj	Download File View File

Solution structure of the complex formed by the two N-terminal RNA-binding domains of nucleolin and a pre-rRNA target

Johansson, C., Finger, L.D., Trantirek, L., Mueller, T.D., Kim, S., Laird-Offringa, I.A., Feigon, J.

(2004) J Mol Biology 337: 799-816

Released	2004-04-27
Method	SOLUTION NMR
Organisms	Mesocricetus auratus
Macromolecule	Nucleolin (protein) 5'-R(GPGPAPUPGPCPCPUPCPCPCPGPAPGPUPGPCPAPUPCP*C)-3' (nucleic acid)

1 to 25 of 475 Structures

Page 1 of 19

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BIO | pdb_00001bio

1C9B | pdb_00001c9b

1DST | pdb_00001dst

1DU3 | pdb_00001du3

1EUJ | pdb_00001euj

1FI6 | pdb_00001fi6

1FYJ | pdb_00001fyj

1HFD | pdb_00001hfd

1HP7 | pdb_00001hp7

1I69 | pdb_00001i69

1I6A | pdb_00001i6a

1JE4 | pdb_00001je4

1KEH | pdb_00001keh

1LA4 | pdb_00001la4

1MEC | pdb_00001mec

1MIT | pdb_00001mit

1MP6 | pdb_00001mp6

1MZL | pdb_00001mzl

1MZM | pdb_00001mzm

1NYJ | pdb_00001nyj

1OIL | pdb_00001oil

1P68 | pdb_00001p68

1PUL | pdb_00001pul

1QZY | pdb_00001qzy

1RKJ | pdb_00001rkj