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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kirchhofer, D."

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Search Summary

This query matches 56 Structures.

Refinements

Structure Determination Methodology

experimental (56)

Scientific Name of Source Organism

	Homo sapiens (55)
	synthetic construct (9)
	Mus musculus (8)
	Ecballium elaterium (4)
	Escherichia coli (1)
	Glycine max (1)
	Macaca mulatta (1)

Taxonomy

	Eukaryota (56)
	other sequences (9)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (52)
	ELECTRON MICROSCOPY (2)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (56)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (21)
	2.5 - 3.0 (15)
	3.0 - 3.5 (9)
	3.5 - 4.0 (2)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (7)
	2005 - 2009 (10)
	2010 - 2014 (10)
	2015 - 2019 (10)
	2020 - 2024 (17)

Enzyme Classification Name

	Hydrolases (43)
	Transferases (1)

Membrane Protein Annotation

OPM (3)

Symmetry Type

	Asymmetric (47)
	Cyclic (10)
	Dihedral (1)

SCOP Classification

	All beta proteins (28)
	Small proteins (8)
	Artifacts (2)

AllSelected

1 to 25 of 56 Structures

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1BF9 \| pdb_00001bf9	Download File View File

N-TERMINAL EGF-LIKE DOMAIN FROM HUMAN FACTOR VII, NMR, 23 STRUCTURES

Muranyi, A., Finn, B.E., Gippert, G.P., Forsen, S., Stenflo, J., Drakenberg, T.

(1998) Biochemistry 37: 10605-10615

Released	1999-02-16
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	FACTOR VII (protein)

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1DAN \| pdb_00001dan	Download File View File

Complex of active site inhibited human blood coagulation factor VIIA with human recombinant soluble tissue factor

Banner, D.W.

(1996) Nature 380: 41-46

Released	1997-09-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	BLOOD COAGULATION FACTOR VIIA heavy chain (protein) BLOOD COAGULATION FACTOR VIIA light chain (protein) SOLUBLE TISSUE FACTOR (protein)
Unique Ligands	0Z6, BGC, CA, CAC, CL, FUC

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1JBU \| pdb_00001jbu	Download File View File

Coagulation Factor VII Zymogen (EGF2/Protease) in Complex with Inhibitory Exosite Peptide A-183

Eigenbrot, C., Kirchhofer, D., Dennis, M.S., Santell, L., Lazarus, R.A., Stamos, J., Ultsch, M.H.

(2001) Structure 9: 627-636

Released	2001-07-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	COAGULATION FACTOR VII (protein) Peptide exosite inhibitor A-183 (protein)
Unique Ligands	BEN, SO4

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1JPS \| pdb_00001jps	Download File View File

Crystal structure of tissue factor in complex with humanized Fab D3h44

Faelber, K., Kirchhofer, D., Presta, L., Kelley, R.F., Muller, Y.A.

(2001) J Mol Biology 313: 83-97

Released	2002-02-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	immunoglobulin Fab D3H44, heavy chain (protein) immunoglobulin Fab D3H44, light chain (protein) tissue factor (protein)

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1JPT \| pdb_00001jpt	Download File View File

Crystal Structure of Fab D3H44

Faelber, K., Kirchhofer, D., Presta, L., Kelley, R.F., Muller, Y.A.

(2001) J Mol Biology 313: 83-97

Released	2002-02-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	immunoglobulin Fab D3H44, heavy chain (protein) immunoglobulin Fab D3h44, light chain (protein)

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1K6Q \| pdb_00001k6q	Download File View File

Crystal structure of antibody Fab fragment D3

Faelber, K., Kelley, R.F., Kirchhofer, D., Muller, Y.A.

To be published

Released	2002-04-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	immunoglobulin Fab D3, heavy chain (protein) immunoglobulin Fab D3, light chain (protein)

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1PG7 \| pdb_00001pg7	Download File View File

Murine 6A6 Fab in complex with humanized anti-Tissue Factor D3H44 Fab

Eigenbrot, C., Meng, Y.G., Krishnamurthy, R., Lipari, M.T., Presta, L., Devaux, B., Wong, T., Moran, P., Bullens, S., Kirchhofer, D.

(2003) J Mol Biology 331: 433-446

Released	2003-08-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	humanized antibody D3H44 (protein) murine antibody 6A6 Fab fragment (protein)

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1SHY \| pdb_00001shy	Download File View File

The Crystal Structure of HGF beta-chain in Complex with the Sema Domain of the Met Receptor.

Stamos, J., Wiesmann, C.

(2004) EMBO J 23: 2325-2335

Released	2004-06-15
Method	X-RAY DIFFRACTION 3.22 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor (protein) Hepatocyte growth factor receptor (protein)

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1SI5 \| pdb_00001si5	Download File View File

Protease-like domain from 2-chain hepatocyte growth factor

Kirchhofer, D., Yao, X., Peek, M., Eigenbrot, C., Lipari, M.T., Billeci, K.L., Maun, H.R., Moran, P., Santell, L., Lazarus, R.A.

(2004) J Biological Chem 279: 39915-39924

Released	2004-12-28
Method	X-RAY DIFFRACTION 2.53 Å
Organisms	Homo sapiens
Macromolecule	hepatocyte growth factor (protein)

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1W0Y \| pdb_00001w0y	Download File View File

tf7a_3771 complex

Banner, D.W., D'Arcy, A., Groebke-Zbinden, K., Ackermann, J., Kirchhofer, D., Ji, Y.-H., Tschopp, T.B., Wallbaum, S., Weber, L.

(2005) Bioorg Med Chem Lett 15: 817

Released	2005-01-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	BLOOD COAGULATION FACTOR VIIA (protein) TISSUE FACTOR (protein)
Unique Ligands	771, BGC, CA, CAC, FUC

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1W2K \| pdb_00001w2k	Download File View File

tf7a_4380 complex

Banner, D.W., D'Arcy, A., Groebke-Zbinden, K., Ackermann, J., Kirchhofer, D., Ji, Y.-H., Tschopp, T.B., Wallbaum, S., Weber, L.

(2005) Bioorg Med Chem Lett 15: 817

Released	2005-06-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	BLOOD COAGULATION FACTOR VIIA (protein) TISSUE FACTOR (protein)
Unique Ligands	380, BGC, CA, CAC, FUC

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1YBW \| pdb_00001ybw	Download File View File

Protease domain of HGFA with no inhibitor

Shia, S., Stamos, J., Kirchhofer, D., Fan, B., Wu, J., Corpuz, R.T., Santell, L., Lazarus, R.A., Eigenbrot, C.

(2005) J Mol Biology 346: 1335-1349

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor activator precursor (protein)
Unique Ligands	NAG

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1YC0 \| pdb_00001yc0	Download File View File

short form HGFA with first Kunitz domain from HAI-1

Shia, S., Stamos, J., Kirchhofer, D., Fan, B., Wu, J., Corpuz, R.T., Santell, L., Lazarus, R.A., Eigenbrot, C.

(2005) J Mol Biology 346: 1335-1349

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor activator (protein) Kunitz-type protease inhibitor 1 (protein)
Unique Ligands	PO4

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1YGC \| pdb_00001ygc	Download File View File

Short Factor VIIa with a small molecule inhibitor

Olivero, A.G., Eigenbrot, C., Goldsmith, R., Robarge, K., Artis, D.R., Flygare, J., Rawson, T., Refino, C., Bunting, S., Kirchhofer, D.

(2005) J Biological Chem 280: 9160-9169

Released	2005-01-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor VII (protein)
Unique Ligands	905, CA, SO4

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2R0K \| pdb_00002r0k	Download File View File

Protease domain of HGFA with inhibitor Fab58

Eigenbrot, C., Shia, S.

(2007) Proc Natl Acad Sci U S A 104: 19784-19789

Released	2007-12-25
Method	X-RAY DIFFRACTION 3.51 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor activator (protein) antibody heavy chain of Fab58, Fab portion only (protein) antibody light chain of Fab58 (protein)

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2R0L \| pdb_00002r0l	Download File View File

Short Form HGFA with Inhibitory Fab75

Eigenbrot, C., Shia, S.

(2007) Proc Natl Acad Sci U S A 104: 19784-19789

Released	2007-12-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Hepatocyte growth factor activator (protein) antibody heavy chain, Fab portion only (protein) antibody light chain (protein)
Unique branched monosaccharides	BMA, NAG

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2WUB \| pdb_00002wub	Download File View File

Crystal structure of HGFA in complex with the allosteric non- inhibitory antibody Fab40.deltaTrp

Ganesan, R., Eigenbrot, C., Shia, S.

(2009) Structure 17: 1614

Released	2009-12-15
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	FAB FRAGMENT FAB40.DELTATRP HEAVY CHAIN (protein) FAB FRAGMENT FAB40.DELTATRP LIGHT CHAIN (protein) HEPATOCYTE GROWTH FACTOR ACTIVATOR LONG CHAIN (protein) HEPATOCYTE GROWTH FACTOR ACTIVATOR SHORT CHAIN (protein)
Unique branched monosaccharides	BMA, NAG

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2WUC \| pdb_00002wuc	Download File View File

Crystal structure of HGFA in complex with the allosteric non- inhibitory antibody Fab40.deltaTrp and Ac-KQLR-chloromethylketone

Ganesan, R., Eigenbrot, C., Shia, S.

(2009) Structure 17: 1614

Released	2009-12-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ACE-KQLR-CHLOROMETHYLKETONE INHIBITOR (protein) FAB FRAGMENT FAB40.DELTATRP HEAVY CHAIN (protein) FAB FRAGMENT FAB40.DELTATRP LIGHT CHAIN (protein) HEPATOCYTE GROWTH FACTOR ACTIVATOR LONG CHAIN (protein) HEPATOCYTE GROWTH FACTOR ACTIVATOR SHORT CHAIN (protein)
Unique branched monosaccharides	NAG

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3K2U \| pdb_00003k2u	Download File View File

Crystal structure of HGFA in complex with the allosteric inhibitory antibody Fab40

Ganesan, R., Eigenbrot, C., Shia, S.

(2009) Structure 17: 1614-1624

Released	2009-12-15
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Antibody, Fab fragment, Heavy Chain (protein) Antibody, Fab fragment, Light Chain (protein) Hepatocyte growth factor activator long chain (protein) Hepatocyte growth factor activator short chain (protein)
Unique branched monosaccharides	NAG

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3TJN \| pdb_00003tjn	Download File View File

HtrA1 catalytic domain, apo form

Eigenbrot, C., Ultsch, M.

(2012) Structure 20: 1040-1050

Released	2012-05-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Serine protease HTRA1 (protein)

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3TJO \| pdb_00003tjo	Download File View File

HtrA1 catalytic domain, mutationally inactivated

Eigenbrot, C., Ultsch, M.

(2012) Structure 20: 1040-1050

Released	2012-05-16
Method	X-RAY DIFFRACTION 2.301 Å
Organisms	Homo sapiens
Macromolecule	Serine protease HTRA1 (protein)
Unique Ligands	BOG, GOL, SO4

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3TJQ \| pdb_00003tjq	Download File View File

N-domain of HtrA1

Eigenbrot, C., Ultsch, M.

(2012) Structure 20: 1040-1050

Released	2012-05-16
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Homo sapiens
Macromolecule	Serine protease HTRA1 (protein)
Unique Ligands	CL, GOL, PT, SCN

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4D9Q \| pdb_00004d9q	Download File View File

Inhibiting Alternative Pathway Complement Activation by Targeting the Exosite on Factor D

Murray, J.M., Wiesmann, C.

(2012) J Biological Chem 287: 12886-12892

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens Macaca mulatta
Macromolecule	Anti-Factor D, heavy chain (protein) Anti-Factor D, light chain (protein) Factor D (protein)
Unique Ligands	GOL, SO4, ZN

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4D9R \| pdb_00004d9r	Download File View File

Inhibiting Alternative Pathway Complement Activation by Targeting the Exosite on Factor D

Murray, J.M., Wiesmann, C.

(2012) J Biological Chem 287: 12886-12892

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Homo sapiens
Macromolecule	Complement factor D (protein) Fab heavy chain (protein) Fab light chain (protein)
Unique Ligands	CL

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4NMX \| pdb_00004nmx	Download File View File

PCSK9(deltaCRD) in complex with phage-derived inhibitory peptide 2-8

Eigenbrot, C., Shia, S.

(2014) J Biological Chem 289: 942-955

Released	2013-12-04
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Proprotein convertase subtilisin/kexin type 9 (protein) peptide 2-8 (protein)

1 to 25 of 56 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BF9 | pdb_00001bf9

1DAN | pdb_00001dan

1JBU | pdb_00001jbu

1JPS | pdb_00001jps

1JPT | pdb_00001jpt

1K6Q | pdb_00001k6q

1PG7 | pdb_00001pg7

1SHY | pdb_00001shy

1SI5 | pdb_00001si5

1W0Y | pdb_00001w0y

1W2K | pdb_00001w2k

1YBW | pdb_00001ybw

1YC0 | pdb_00001yc0

1YGC | pdb_00001ygc

2R0K | pdb_00002r0k

2R0L | pdb_00002r0l

2WUB | pdb_00002wub

2WUC | pdb_00002wuc

3K2U | pdb_00003k2u

3TJN | pdb_00003tjn

3TJO | pdb_00003tjo

3TJQ | pdb_00003tjq

4D9Q | pdb_00004d9q

4D9R | pdb_00004d9r

4NMX | pdb_00004nmx