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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Korner, R."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Escherichia coli BL21(DE3) (6)
	Escherichia coli (3)
	Saccharomyces cerevisiae S288C (3)
	Bos taurus (2)
	Drosophila melanogaster (2)
	Homo sapiens (1)

Taxonomy

	Bacteria (9)
	Eukaryota (7)

Experimental Method

	ELECTRON MICROSCOPY (9)
	X-RAY DIFFRACTION (7)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (3)
	2.5 - 3.0 (4)
	3.0 - 3.5 (4)
	> 4.5 (4)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (2)
	2015 - 2019 (3)
	2020 - 2024 (9)

Enzyme Classification Name

	Isomerases (9)
	Transferases (3)
	Ligases (2)

Symmetry Type

	Asymmetric (8)
	Cyclic (7)
	Dihedral (1)

SCOP Classification

	All alpha proteins (2)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 16 of 16 Structures

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2BEP \| pdb_00002bep	Download File View File

Crystal structure of ubiquitin conjugating enzyme E2-25K

Pichler, A., Knipscheer, P., Oberhofer, E., Van Dijk, W.J., Korner, R., Velgaard Olsen, J., Jentsch, S., Melchior, F., Sixma, T.K.

(2005) Nat Struct Mol Biol 12: 264

Released	2005-02-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	UBIQUITIN-CONJUGATING ENZYME E2-25 KDA (protein)
Unique Ligands	BME

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2BF8 \| pdb_00002bf8	Download File View File

Crystal structure of SUMO modified ubiquitin conjugating enzyme E2- 25K

Pichler, A., Knipscheer, P., Oberhofer, E., Van Dijk, W.J., Korner, R., Velgaard Olsen, J., Jentsch, S., Melchior, F., Sixma, T.K.

(2005) Nat Struct Mol Biol 12: 264

Released	2005-02-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	UBIQUITIN-CONJUGATING ENZYME E2-25 KDA (protein) UBIQUITIN-LIKE PROTEIN SMT3C (protein)

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3TXM \| pdb_00003txm	Download File View File

Crystal structure of Rpn6 from Drosophila melanogaster, Gd(3+) complex

Pathare, G.R., Bracher, A.

(2012) Proc Natl Acad Sci U S A 109: 149-154

Released	2011-12-14
Method	X-RAY DIFFRACTION 3 Å
Organisms	Drosophila melanogaster
Macromolecule	26S proteasome regulatory complex subunit p42B (protein)
Unique Ligands	GD3, SO4

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3TXN \| pdb_00003txn	Download File View File

Crystal structure of Rpn6 from Drosophila melanogaster, native data

Pathare, G.R., Bracher, A.

(2012) Proc Natl Acad Sci U S A 109: 149-154

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.496 Å
Organisms	Drosophila melanogaster
Macromolecule	26S proteasome regulatory complex subunit p42B (protein)
Unique Ligands	GOL, SO4

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6HB1 \| pdb_00006hb1	Download File View File

Structure of Hgh1, crystal form I

Moenkemeyer, L., Klaips, C.L., Balchin, D., Koerner, R., Hartl, F.U., Bracher, A.

(2019) Mol Cell 74: 88-100.e9

Released	2019-02-27
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Protein HGH1 (protein)
Unique Ligands	CL

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6HB2 \| pdb_00006hb2	Download File View File

Structure of Hgh1, crystal form I, Selenomethionine derivative

Moenkemeyer, L., Klaips, C.L., Balchin, D., Koerner, R., Hartl, F.U., Bracher, A.

(2019) Mol Cell 74: 88-100.e9

Released	2019-02-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Protein HGH1 (protein)
Unique Ligands	CL

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6HB3 \| pdb_00006hb3	Download File View File

Structure of Hgh1, crystal form II

Moenkemeyer, L., Klaips, C.L., Balchin, D., Koerner, R., Hartl, F.U., Bracher, A.

(2019) Mol Cell 74: 88-100.e9

Released	2019-02-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Protein HGH1 (protein)

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8P4M \| pdb_00008p4m	Download File View File

CryoEM structure of a C7-symmetrical GroEL7-GroES7 cage in presence of ADP-BeFx

Wagner, J., Beck, F., Bracher, A., Caravajal, A.I., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Escherichia coli
Macromolecule	Chaperonin GroEL (protein) Co-chaperonin GroES (protein)
Unique Ligands	ADP, BEF, K, MG

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8P4N \| pdb_00008p4n	Download File View File

CryoEM structure of a GroEL7-GroES7 cage with encapsulated disordered substrate MetK in the presence of ADP-BeFx

Wagner, J., Beck, F., Bracher, A., Caravajal, A.I., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Escherichia coli
Macromolecule	Chaperonin GroEL (protein) Co-chaperonin GroES (protein)
Unique Ligands	ADP, BEF, K, MG

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8P4O \| pdb_00008p4o	Download File View File

CryoEM structure of a GroEL7-GroES7 cage with encapsulated ordered substrate MetK in the presence of ADP-BeFx

Wagner, J., Beck, F., Bracher, A., Caravajal, A.I., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 3.04 Å
Organisms	Escherichia coli
Macromolecule	Chaperonin GroEL (protein) Co-chaperonin GroES (protein) S-adenosylmethionine synthase (protein)
Unique Ligands	ADP, BEF, K, MG

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8P4P \| pdb_00008p4p	Download File View File

Structure average of GroEL14 complexes found in the cytosol of Escherichia coli overexpressing GroEL obtained by cryo electron tomography

Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 9.6 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Chaperonin GroEL (protein)
Unique Ligands	ADP, ATP, K, MG

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8P4R \| pdb_00008p4r	Download File View File

In situ structure average of GroEL14-GroES14 complexes in Escherichia coli cytosol obtained by cryo electron tomography

Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 11.9 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Chaperonin GroEL (protein) Co-chaperonin GroES (protein)
Unique Ligands	ATP, K, MG

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8QXS \| pdb_00008qxs	Download File View File

CryoEM structure of a GroEL14-GroES7 complex in presence of ADP-BeFx with wide GroEL7 trans ring conformation

Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 3.12 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Chaperonin GroEL (protein) Co-chaperonin GroES (protein)
Unique Ligands	ADP, BEF, K, MG

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8QXT \| pdb_00008qxt	Download File View File

CryoEM structure of a GroEL14-GroES7 complex in presence of ADP-BeFx with narrow GroEL7 trans ring conformation

Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Chaperonin GroEL (protein) Co-chaperonin GroES (protein)
Unique Ligands	ADP, BEF, K, MG

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8QXU \| pdb_00008qxu	Download File View File

In situ structure average of GroEL14-GroES7 complexes with wide GroEL7 trans ring conformation in Escherichia coli cytosol obtained by cryo electron tomography

Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Chaperonin GroEL (protein) Co-chaperonin GroES (protein)
Unique Ligands	ADP, ATP, K, MG

Explore in 3D

8QXV \| pdb_00008qxv	Download File View File

In situ structure average of GroEL14-GroES7 complexes with narrow GroEL7 trans ring conformation in Escherichia coli cytosol obtained by cryo electron tomography

Wagner, J., Caravajal, A.I., Beck, F., Bracher, A., Wan, W., Bohn, S., Koerner, R., Baumeister, W., Fernandez-Busnadiego, R., Hartl, F.U.

(2024) Nature 633: 459-464

Released	2024-07-03
Method	ELECTRON MICROSCOPY 13.6 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Chaperonin GroEL (protein) Co-chaperonin GroES (protein)
Unique Ligands	ADP, ATP, K, MG

1 to 16 of 16 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2BEP | pdb_00002bep

Crystal structure of ubiquitin conjugating enzyme E2-25K

2BF8 | pdb_00002bf8

Crystal structure of SUMO modified ubiquitin conjugating enzyme E2- 25K

3TXM | pdb_00003txm

Crystal structure of Rpn6 from Drosophila melanogaster, Gd(3+) complex

3TXN | pdb_00003txn

Crystal structure of Rpn6 from Drosophila melanogaster, native data

6HB1 | pdb_00006hb1

Structure of Hgh1, crystal form I

6HB2 | pdb_00006hb2

Structure of Hgh1, crystal form I, Selenomethionine derivative

6HB3 | pdb_00006hb3

Structure of Hgh1, crystal form II

8P4M | pdb_00008p4m

CryoEM structure of a C7-symmetrical GroEL7-GroES7 cage in presence of ADP-BeFx

8P4N | pdb_00008p4n

CryoEM structure of a GroEL7-GroES7 cage with encapsulated disordered substrate MetK in the presence of ADP-BeFx

8P4O | pdb_00008p4o

CryoEM structure of a GroEL7-GroES7 cage with encapsulated ordered substrate MetK in the presence of ADP-BeFx

8P4P | pdb_00008p4p

Structure average of GroEL14 complexes found in the cytosol of Escherichia coli overexpressing GroEL obtained by cryo electron tomography

8P4R | pdb_00008p4r

In situ structure average of GroEL14-GroES14 complexes in Escherichia coli cytosol obtained by cryo electron tomography

8QXS | pdb_00008qxs

CryoEM structure of a GroEL14-GroES7 complex in presence of ADP-BeFx with wide GroEL7 trans ring conformation

8QXT | pdb_00008qxt

CryoEM structure of a GroEL14-GroES7 complex in presence of ADP-BeFx with narrow GroEL7 trans ring conformation

8QXU | pdb_00008qxu

In situ structure average of GroEL14-GroES7 complexes with wide GroEL7 trans ring conformation in Escherichia coli cytosol obtained by cryo electron tomography

8QXV | pdb_00008qxv

In situ structure average of GroEL14-GroES7 complexes with narrow GroEL7 trans ring conformation in Escherichia coli cytosol obtained by cryo electron tomography

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2BEP | pdb_00002bep

2BF8 | pdb_00002bf8

3TXM | pdb_00003txm

3TXN | pdb_00003txn

6HB1 | pdb_00006hb1

6HB2 | pdb_00006hb2

6HB3 | pdb_00006hb3

8P4M | pdb_00008p4m

8P4N | pdb_00008p4n

8P4O | pdb_00008p4o

8P4P | pdb_00008p4p

8P4R | pdb_00008p4r

8QXS | pdb_00008qxs

8QXT | pdb_00008qxt

8QXU | pdb_00008qxu

8QXV | pdb_00008qxv