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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kuzin, A.P."

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Search Summary

This query matches 163 Structures.

Refinements

Structure Determination Methodology

experimental (163)

Scientific Name of Source Organism

	Bacillus subtilis (17)
	Streptomyces sp. R61 (14)
	synthetic construct (14)
	Escherichia coli (10)
	Homo sapiens (7)
	Bacillus cereus ATCC 14579 (5)
	Pseudomonas fluorescens (5)
	Agrobacterium fabrum str. C58 (4)
	Shewanella oneidensis MR-1 (4)
	Drosophila melanogaster (3)

More...

Taxonomy

	Bacteria (131)
	other sequences (14)
	Eukaryota (11)
	Archaea (5)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (161)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (163)

Refinement Resolution (Å)

	1.0 - 1.5 (20)
	1.5 - 2.0 (33)
	2.0 - 2.5 (63)
	2.5 - 3.0 (37)
	3.0 - 3.5 (8)

Release Date

	1980 - 1984 (1)
	1995 - 1999 (5)
	2000 - 2004 (41)
	2005 - 2009 (92)
	2010 - 2014 (24)

Enzyme Classification Name

	Hydrolases (39)
	Transferases (10)
	Isomerases (6)
	Oxidoreductases (4)
	Lyases (3)
	Ligases (1)

Symmetry Type

	Asymmetric (93)
	Cyclic (69)
	Dihedral (20)
	Octahedral (1)

SCOP Classification

	Artifacts (45)
	Alpha and beta proteins (a+b) (34)
	Alpha and beta proteins (a/b) (29)
	All beta proteins (25)
	All alpha proteins (11)
	Multi-domain proteins (alpha and beta) (19)
	Small proteins (1)

AllSelected

1 to 25 of 163 Structures

Page 1 of 7

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1ACX \| pdb_00001acx	Download File View File

ACTINOXANTHIN STRUCTURE AT THE ATOMIC LEVEL (RUSSIAN)

Pletnev, V.Z., Kuzin, A.P.

(1982) Bioorg Khim 8: 1637

Released	1983-03-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces globisporus
Macromolecule	ACTINOXANTHIN (protein)

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1CEF \| pdb_00001cef	Download File View File

CEFOTAXIME COMPLEXED WITH THE STREPTOMYCES R61 DD-PEPTIDASE

Knox, J.R., Kuzin, A.P.

(1995) Biochemistry 34: 9532-9540

Released	1996-10-14
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE TRANSPEPTIDASE (protein)
Unique Ligands	CEF

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1CEG \| pdb_00001ceg	Download File View File

CEPHALOTHIN COMPLEXED WITH DD-PEPTIDASE

Knox, J.R., Kuzin, A.P.

(1995) Biochemistry 34: 9532-9540

Released	1996-10-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE TRANSPEPTIDASE (protein)
Unique Ligands	CEP

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1EHI \| pdb_00001ehi	Download File View File

D-ALANINE:D-LACTATE LIGASE (LMDDL2) OF VANCOMYCIN-RESISTANT LEUCONOSTOC MESENTEROIDES

Kuzin, A.P., Sun, T., Jorczak-Baillass, J., Healy, V.L., Walsh, C.T., Knox, J.R.

(2000) Structure 8: 463-470

Released	2000-05-23
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Leuconostoc mesenteroides
Macromolecule	D-ALANINE:D-LACTATE LIGASE (protein)
Unique Ligands	ADP, MG, PHY

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1FSG \| pdb_00001fsg	Download File View File

TOXOPLASMA GONDII HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE COMPLEXED WITH 9-DEAZAGUANINE, ALPHA-D-5-PHOSPHORIBOSYL-1-PYROPHOSPHATE (PRPP) AND TWO MG2+ IONS

Heroux, A., White, E.L., Ross, L.J., Kuzin, A.P., Borhani, D.W.

(2000) Structure 8: 1309-1318

Released	2000-12-06
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Toxoplasma gondii RH
Macromolecule	HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE (protein)
Unique Ligands	9DG, MG, PRP

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1GCE \| pdb_00001gce	Download File View File

STRUCTURE OF THE BETA-LACTAMASE OF ENTEROBACTER CLOACAE GC1

Crichlow, G.V., Kuzin, A.P., Nukaga, M., Sawai, T., Knox, J.R.

(1999) Biochemistry 38: 10256-10261

Released	1999-08-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterobacter cloacae
Macromolecule	BETA-LACTAMASE (protein)

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1HVB \| pdb_00001hvb	Download File View File

CRYSTAL STRUCTURE OF STREPTOMYCES R61 DD-PEPTIDASE COMPLEXED WITH A NOVEL CEPHALOSPORIN ANALOG OF CELL WALL PEPTIDOGLYCAN

McDonough, M.A., Lee, W., Silvaggi, N.R., Mobashery, S., Kelly, J.A.

(2001) Proc Natl Acad Sci U S A 98: 1427-1431

Released	2001-02-07
Method	X-RAY DIFFRACTION 1.17 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE (protein)
Unique Ligands	CEH

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1IKG \| pdb_00001ikg	Download File View File

MICHAELIS COMPLEX OF STREPTOMYCES R61 DD-PEPTIDASE WITH A SPECIFIC PEPTIDOGLYCAN SUBSTRATE FRAGMENT

Mcdonough, M.A., Anderson, J.W., Silvaggi, N.R., Pratt, R.F., Knox, J.R., Kelly, J.A.

(2002) J Mol Biology 322: 111-122

Released	2002-09-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE (protein)
Unique Ligands	REX

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1IKI \| pdb_00001iki	Download File View File

COMPLEX OF STREPTOMYCES R61 DD-PEPTIDASE WITH THE PRODUCTS OF A SPECIFIC PEPTIDOGLYCAN SUBSTRATE FRAGMENT

Mcdonough, M.A., Anderson, J.W., Silvaggi, N.R., Pratt, R.F., Knox, J.R., Kelly, J.A.

(2002) J Mol Biology 322: 111-122

Released	2002-09-11
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE (protein)
Unique Ligands	DAL, REY

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1M6K \| pdb_00001m6k	Download File View File

Structure of the OXA-1 class D beta-lactamase

Sun, T., Nukaga, M., Mayama, K., Braswell, E.H., Knox, J.R.

(2003) Protein Sci 12: 82-91

Released	2003-01-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	beta-lactamase OXA-1 (protein)
Unique Ligands	MPD

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1MPL \| pdb_00001mpl	Download File View File

CRYSTAL STRUCTURE OF PHOSPHONATE-INHIBITED D-ALA-D-ALA PEPTIDASE REVEALS AN ANALOG OF A TETRAHEDRAL TRANSITION STATE

Silvaggi, N.R., Anderson, J.W., Brinsmade, S.R., Pratt, R.F., Kelly, J.A.

(2003) Biochemistry 42: 1199-1208

Released	2003-02-25
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-alanyl-D-alanine carboxypeptidase (protein)
Unique Ligands	GOL, RE1

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1NPD \| pdb_00001npd	Download File View File

X-RAY STRUCTURE OF SHIKIMATE DEHYDROGENASE COMPLEXED WITH NAD+ FROM E.COLI (YDIB) NORTHEAST STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NESG) TARGET ER24

Benach, J., Kuzin, A.P., Lee, I., Rost, B., Chiang, Y., Acton, T.B., Montelione, G.T., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

(2003) J Biological Chem 278: 19176-19182

Released	2003-01-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	HYPOTHETICAL SHIKIMATE 5-DEHYDROGENASE-LIKE PROTEIN YDIB (protein)
Unique Ligands	NAD

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1PW1 \| pdb_00001pw1	Download File View File

Non-Covalent Complex Of Streptomyces R61 DD-Peptidase With A Highly Specific Penicillin

Silvaggi, N.R., Josephine, H.R., Pratt, R.F., Kelly, J.A.

(2005) J Mol Biology 345: 521-533

Released	2004-07-13
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-alanyl-D-alanine carboxypeptidase (protein)
Unique Ligands	FOR, GOL, HEL

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1PW8 \| pdb_00001pw8	Download File View File

Covalent Acyl Enzyme Complex Of The R61 DD-Peptidase with A Highly Specific Cephalosporin

Silvaggi, N.R., Josephine, H.R., Pratt, R.F., Kelly, J.A.

(2005) J Mol Biology 345: 521-533

Released	2004-07-13
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-alanyl-D-alanine carboxypeptidase (protein)
Unique Ligands	GOL, H2A

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1PWC \| pdb_00001pwc	Download File View File

penicilloyl acyl enzyme complex of the Streptomyces R61 DD-peptidase with penicillin G

Silvaggi, N.R., Josephine, H.R., Pratt, R.F., Kelly, J.A.

(2005) J Mol Biology 345: 521-533

Released	2004-07-13
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-alanyl-D-alanine carboxypeptidase (protein)
Unique Ligands	PNM

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1PWD \| pdb_00001pwd	Download File View File

Covalent acyl enzyme complex of the Streptomyces R61 DD-peptidase with cephalosporin C

Silvaggi, N.R., Josephine, H.R., Pratt, R.F., Kelly, J.A.

(2005) J Mol Biology 345: 521-533

Released	2004-07-13
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-alanyl-D-alanine carboxypeptidase precursor (protein)
Unique Ligands	0MU

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1PWG \| pdb_00001pwg	Download File View File

Covalent Penicilloyl Acyl Enzyme Complex Of The Streptomyces R61 DD-Peptidase With A Highly Specific Penicillin

Silvaggi, N.R., Josephine, H.R., Pratt, R.F., Kelly, J.A.

(2005) J Mol Biology 345: 521-533

Released	2004-07-13
Method	X-RAY DIFFRACTION 1.074 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-alanyl-D-alanine carboxypeptidase (protein)
Unique Ligands	HE0

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1QYI \| pdb_00001qyi	Download File View File

X-RAY STRUCTURE OF Q8NW41 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ZR25.

Kuzin, A.P., Edstrom, W., Ma, L.C., Shin, L., Xiao, R., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2003-12-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Staphylococcus aureus subsp. aureus MW2
Macromolecule	hypothetical protein (protein)

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1RCU \| pdb_00001rcu	Download File View File

X-RAY STRUCTURE OF TM1055 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET VT76

Kuzin, A.P., Chen, Y., Edwards, A., Skarina, T., Savchenko, A., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2003-12-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermotoga maritima
Macromolecule	conserved hypothetical protein VT76 (protein)

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1SBK \| pdb_00001sbk	Download File View File

X-RAY STRUCTURE OF YDII_ECOLI NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ER29.

Kuzin, A.P., Edstrom, W., Vorobiev, S.M., Lee, I., Forouhar, F., Ma, L., Chiang, Y., Rong, X., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2004-02-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Hypothetical protein ydiI (protein)
Unique Ligands	SO4

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1SC0 \| pdb_00001sc0	Download File View File

X-ray Structure of YB61_HAEIN Northeast Structural Genomics Consortium Target IR63

Kuzin, A.P., Lee, I., Chiang, Y., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Haemophilus influenzae
Macromolecule	Hypothetical protein HI1161 (protein)

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1SCW \| pdb_00001scw	Download File View File

TOWARD BETTER ANTIBIOTICS: CRYSTAL STRUCTURE OF R61 DD-PEPTIDASE INHIBITED BY A NOVEL MONOCYCLIC PHOSPHATE INHIBITOR

Silvaggi, N.R., Kaur, K., Adediran, S.A., Pratt, R.F., Kelly, J.A.

(2004) Biochemistry 43: 7046-7053

Released	2004-06-22
Method	X-RAY DIFFRACTION 1.13 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-alanyl-D-alanine carboxypeptidase (protein)
Unique Ligands	CP5, GOL

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1SDE \| pdb_00001sde	Download File View File

Toward Better Antibiotics: Crystal Structure Of D-Ala-D-Ala Peptidase inhibited by a novel bicyclic phosphate inhibitor

Silvaggi, N.R., Kaur, K., Adediran, S.A., Pratt, R.F., Kelly, J.A.

(2004) Biochemistry 43: 7046-7053

Released	2004-10-12
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-alanyl-D-alanine carboxypeptidase (protein)
Unique Ligands	2PB, GOL