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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Lauko, A."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	synthetic construct (19)
	Influenza A virus (1)

Taxonomy

	other sequences (19)
	Riboviria (1)

Experimental Method

	SOLUTION NMR (11)
	X-RAY DIFFRACTION (7)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (1)
	1.5 - 2.0 (2)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)

Release Date

	2020 - 2024 (13)
	2025 - 2029 (6)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Asymmetric (10)
	Cyclic (1)

AllSelected

1 to 19 of 19 Structures

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7UBC \| pdb_00007ubc	Download File View File

Solution NMR structure of 9-residue Rosetta-designed cyclic peptide D9.16 in d6-DMSO with cis/trans switching

Ramelot, T.A., Tejero, R., Monteltione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D9.16 DPR-MAA-ALA-DVA-MLE-LEU-LEU-PRO-DLE (protein)

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7UBD \| pdb_00007ubd	Download File View File

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in d6-DMSO with cis/trans switching (A-CC conformation)

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D8.31 DAL-DPR-MLU-DVA-DAL-DPR-MLU-DVA (protein)

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7UBE \| pdb_00007ube	Download File View File

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in d6-DMSO with cis/trans switching

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU (protein)

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7UBF \| pdb_00007ubf	Download File View File

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in 50% d6-DMSO and 50% water with cis/trans switching (CC conformation, 50%)

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU (protein)

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7UBG \| pdb_00007ubg	Download File View File

Solution NMR structure of 9-residue Rosetta-designed cyclic peptide D9.16 in CDCl3 with cis/trans switching (A-TT conformation)

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D9.16 DPR-MAA-ALA-DVA-MLE-LEU-LEU-PRO-DLE (protein)

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7UBH \| pdb_00007ubh	Download File View File

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in CDCl3 with cis/trans switching

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D8.31 DAL-DPR-MLU-DVA-DAL-DPR-MLU-DVA (protein)

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7UBI \| pdb_00007ubi	Download File View File

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in CDCl3 with cis/trans switching (TT conformation, 47%)

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU (protein)

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7UCP \| pdb_00007ucp	Download File View File

computationally designed macrocycle

Bhardwaj, G., Baker, D., Rettie, S., Glynn, C., Sawaya, M.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	X-RAY DIFFRACTION 0.85 Å
Organisms	synthetic construct
Macromolecule	computationally designed cyclic peptide D8.3.p2 (protein)

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7UZL \| pdb_00007uzl	Download File View File

Solution NMR structure of 9-residue Rosetta-designed cyclic peptide D9.16 in CDCl3 with cis/trans switching (B-TC conformation)

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D9.16 DPR-MAA-ALA-DVA-MLE-LEU-LEU-PRO-DLE (protein)

Explore in 3D

8CTO \| pdb_00008cto	Download File View File

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in d6-DMSO with cis/trans switching (B-CT conformation)

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D8.31 DAL-DPR-MLU-DVA-DAL-DPR-MLU-DVA (protein)

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8CUN \| pdb_00008cun	Download File View File

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in 50% d6-DMSO and 50% water with cis/trans switching (CC conformation, 50%)

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU (protein)

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8CWA \| pdb_00008cwa	Download File View File

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in CDCl3 with cis/trans switching (TC conformation, 53%)

Ramelot, T.A., Tejero, R., Montelione, G.T.

(2022) Cell 185: 3520-3532.e26

Released	2022-09-14
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU (protein)

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8SK7 \| pdb_00008sk7	Download File View File

Cryo-EM structure of designed Influenza HA binder, HA_20, bound to Influenza HA (Strain: Iowa43)

Borst, A.J., Bennett, N.R.

(2023) Nature 620: 1089-1100

Released	2023-06-14
Method	ELECTRON MICROSCOPY 2.93 Å
Organisms	Influenza A virus synthetic construct
Macromolecule	HA_20 minibinder (RFdiffusion-designed) (protein) Hemagglutinin (protein) Hemagglutinin HA1 chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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9DED \| pdb_00009ded	Download File View File

Designed protein n8

Pellock, S.J., Lauko, A., Bera, A.

(2025) Science eadu2454-eadu2454

Released	2025-02-19
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	synthetic construct
Macromolecule	Design protein n8 (protein)

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9DEE \| pdb_00009dee	Download File View File

The designed serine hydrolase known as super

Pellock, S.J., Lauko, A., Bera, A.K.

(2025) Science eadu2454-eadu2454

Released	2025-02-19
Method	X-RAY DIFFRACTION 1.21 Å
Organisms	synthetic construct
Macromolecule	serine hydrolase (protein)

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9DEF \| pdb_00009def	Download File View File

The designed serine hydrolase known as win

Pellock, S.J., Lauko, A., Bera, A.K.

(2025) Science eadu2454-eadu2454

Released	2025-02-19
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	synthetic construct
Macromolecule	Win (protein)
Unique Ligands	ACY, CL

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9DEG \| pdb_00009deg	Download File View File

The designed serine hydrolase known as win1

Lauko, A., Pellock, S.J., Bera, A.K.

(2025) Science eadu2454-eadu2454

Released	2025-02-19
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	synthetic construct
Macromolecule	Win1 (protein)
Unique Ligands	ACT

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9DEH \| pdb_00009deh	Download File View File

The designed serine hydrolase known as win31

Pellock, S.J., Lauko, A., Bera, A.K.

(2025) Science eadu2454-eadu2454

Released	2025-02-19
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	synthetic construct
Macromolecule	Win31 (protein)
Unique Ligands	PG4, TLA

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9MRB \| pdb_00009mrb	Download File View File

The designed serine hydrolase known as dad_t1

Pellock, S.J., Lauko, A., Bera, A., Baker, D.

To be published

Released	2025-02-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	synthetic construct
Macromolecule	dad_t1 (protein)
Unique Ligands	PG4

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

7UBC | pdb_00007ubc

Solution NMR structure of 9-residue Rosetta-designed cyclic peptide D9.16 in d6-DMSO with cis/trans switching

7UBD | pdb_00007ubd

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in d6-DMSO with cis/trans switching (A-CC conformation)

7UBE | pdb_00007ube

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in d6-DMSO with cis/trans switching

7UBF | pdb_00007ubf

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in 50% d6-DMSO and 50% water with cis/trans switching (CC conformation, 50%)

7UBG | pdb_00007ubg

Solution NMR structure of 9-residue Rosetta-designed cyclic peptide D9.16 in CDCl3 with cis/trans switching (A-TT conformation)

7UBH | pdb_00007ubh

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in CDCl3 with cis/trans switching

7UBI | pdb_00007ubi

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in CDCl3 with cis/trans switching (TT conformation, 47%)

7UCP | pdb_00007ucp

computationally designed macrocycle

7UZL | pdb_00007uzl

Solution NMR structure of 9-residue Rosetta-designed cyclic peptide D9.16 in CDCl3 with cis/trans switching (B-TC conformation)

8CTO | pdb_00008cto

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in d6-DMSO with cis/trans switching (B-CT conformation)

8CUN | pdb_00008cun

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in 50% d6-DMSO and 50% water with cis/trans switching (CC conformation, 50%)

8CWA | pdb_00008cwa

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in CDCl3 with cis/trans switching (TC conformation, 53%)

8SK7 | pdb_00008sk7

Cryo-EM structure of designed Influenza HA binder, HA_20, bound to Influenza HA (Strain: Iowa43)

9DED | pdb_00009ded

Designed protein n8

9DEE | pdb_00009dee

The designed serine hydrolase known as super

9DEF | pdb_00009def

The designed serine hydrolase known as win

9DEG | pdb_00009deg

The designed serine hydrolase known as win1

9DEH | pdb_00009deh

The designed serine hydrolase known as win31

9MRB | pdb_00009mrb

The designed serine hydrolase known as dad_t1

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Structure Determination Methodology

Scientific Name of Source Organism

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Refinement Resolution (Å)

Release Date

Enzyme Classification Name

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7UBC | pdb_00007ubc

7UBD | pdb_00007ubd

7UBE | pdb_00007ube

7UBF | pdb_00007ubf

7UBG | pdb_00007ubg

7UBH | pdb_00007ubh

7UBI | pdb_00007ubi

7UCP | pdb_00007ucp

7UZL | pdb_00007uzl

8CTO | pdb_00008cto

8CUN | pdb_00008cun

8CWA | pdb_00008cwa

8SK7 | pdb_00008sk7

9DED | pdb_00009ded

9DEE | pdb_00009dee

9DEF | pdb_00009def

9DEG | pdb_00009deg

9DEH | pdb_00009deh

9MRB | pdb_00009mrb