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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Li, N."

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Search Summary

This query matches 299 Structures.

Refinements

Structure Determination Methodology

experimental (299)

Scientific Name of Source Organism

	Homo sapiens (144)
	Mus musculus (15)
	synthetic construct (15)
	Escherichia coli K-12 (11)
	Saccharomyces cerevisiae S288C (9)
	Pseudomonas aeruginosa (8)
	HTLV-1 subtype C (7)
	Bacillus subtilis subsp. subtilis str. 168 (6)
	Candidatus Scalindua brodae (6)
	Enterovirus A71 (6)

More...

Taxonomy

	Eukaryota (184)
	Bacteria (90)
	Riboviria (20)
	other sequences (15)
	Duplodnaviria (10)
	Varidnaviria (6)

Experimental Method

	X-RAY DIFFRACTION (159)
	ELECTRON MICROSCOPY (139)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (296)
	RNA (33)
	DNA (21)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (25)
	1.5 - 2.0 (41)
	2.0 - 2.5 (51)
	2.5 - 3.0 (44)
	3.0 - 3.5 (61)
	3.5 - 4.0 (39)
	4.0 - 4.5 (8)
	> 4.5 (27)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (9)
	2005 - 2009 (1)
	2010 - 2014 (45)
	2015 - 2019 (68)
	2020 - 2024 (160)
	2025 - 2029 (10)

Enzyme Classification Name

	Hydrolases (79)
	Transferases (46)
	Oxidoreductases (8)
	Ligases (10)
	Lyases (5)
	Isomerases (1)

Membrane Protein Annotation

	PDBTM (40)
	MemProtMD (29)
	OPM (10)
	mpstruc (19)

Symmetry Type

	Asymmetric (214)
	Cyclic (73)
	Dihedral (10)

SCOP Classification

	Alpha and beta proteins (a+b) (26)
	Alpha and beta proteins (a/b) (24)
	All beta proteins (19)
	Artifacts (18)
	All alpha proteins (6)
	Membrane and cell surface proteins and peptides (1)
	Peptides (2)
	Small proteins (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 299 Structures

Page 1 of 12

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1AV2 \| pdb_00001av2	Download File View File

Gramicidin A/CsCl complex, active as a dimer

Burkhart, B.M., Li, N., Langs, D.A., Duax, W.L.

(1998) Proc Natl Acad Sci U S A 95: 12950

Released	1998-07-01
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Brevibacillus brevis
Macromolecule	GRAMICIDIN A (protein)
Unique Ligands	CL, CS, MOH

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1BDW \| pdb_00001bdw	Download File View File

GRAMICIDIN D FROM BACILLUS BREVIS (ACTIVE FORM)

Burkhart, B.M., Pangborn, W.A., Duax, W.L.

(1998) Proc Natl Acad Sci U S A 95: 12950

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Brevibacillus brevis
Macromolecule	GRAMICIDIN A (protein)
Unique Ligands	ACY

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1BS9 \| pdb_00001bs9	Download File View File

ACETYLXYLAN ESTERASE FROM P. PURPUROGENUM REFINED AT 1.10 ANGSTROMS

Ghosh, D., Erman, M., Sawicki, M.W., Lala, P., Weeks, D.R., Li, N., Pangborn, W., Thiel, D.J., Jornvall, H., Eyzaguirre, J.

(1999) Acta Crystallogr D Biol Crystallogr 55: 779-784

Released	1999-05-18
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Talaromyces purpureogenus
Macromolecule	ACETYL XYLAN ESTERASE (protein)
Unique Ligands	SO4

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1CLE \| pdb_00001cle	Download File View File

STRUCTURE OF UNCOMPLEXED AND LINOLEATE-BOUND CANDIDA CYLINDRACEA CHOLESTEROL ESTERASE

Ghosh, D.

(1995) Structure 3: 279-288

Released	1996-03-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Limtongozyma cylindracea
Macromolecule	CHOLESTEROL ESTERASE (protein)
Unique Ligands	CLL, NAG, PO4
Unique branched monosaccharides	NAG

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1F90 \| pdb_00001f90	Download File View File

FAB FRAGMENT OF MONOCLONAL ANTIBODY (LNKB-2) AGAINST HUMAN INTERLEUKIN-2 IN COMPLEX WITH ANTIGENIC PEPTIDE

Afonin, P.V., Fokin, A.V., Tsigannik, I.N., Mikhailova, I.Y., Onoprienko, L.V., Mikhaleva, I.I., Ivanov, V.T., Mareeva, T.Y., Nesmeyanov, V.A., Li, N., Duax, W.L., Pletnev, V.Z.

(2001) Protein Sci 10: 1514-1521

Released	2001-07-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	ANTIGENIC NONAPEPTIDE (protein) FAB FRAGMENT OF MONOCLONAL ANTIBODY (protein)

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1G66 \| pdb_00001g66	Download File View File

ACETYLXYLAN ESTERASE AT 0.90 ANGSTROM RESOLUTION

Ghosh, D., Sawicki, M., Lala, P., Erman, M., Pangborn, W., Eyzaguirre, J., Gutierrez, R., Jornvall, H., Thiel, D.J.

(2001) J Biological Chem 276: 11159-11166

Released	2001-01-17
Method	X-RAY DIFFRACTION 0.9 Å
Organisms	Talaromyces purpureogenus
Macromolecule	ACETYL XYLAN ESTERASE II (protein)
Unique Ligands	GOL, SO4

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1I1S \| pdb_00001i1s	Download File View File

SOLUTION STRUCTURE OF THE TRANSCRIPTIONAL ACTIVATION DOMAIN OF THE BACTERIOPHAGE T4 PROTEIN MOTA

Li, N., Zhang, W., White, S.W., Kriwacki, R.W.

(2001) Biochemistry 40: 4293-4302

Released	2001-02-14
Method	SOLUTION NMR
Organisms	Tequatrovirus T4
Macromolecule	MOTA (protein)

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1IAX \| pdb_00001iax	Download File View File

CRYSTAL STRUCTURE OF ACC SYNTHASE COMPLEXED WITH PLP

Huai, Q., Xia, Y., Chen, Y., Callahan, B., Li, N., Ke, H.

(2001) J Biological Chem 276: 38210-38216

Released	2001-04-04
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Solanum lycopersicum
Macromolecule	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 2 (protein)
Unique Ligands	PLP, SO4

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1IAY \| pdb_00001iay	Download File View File

CRYSTAL STRUCTURE OF ACC SYNTHASE COMPLEXED WITH COFACTOR PLP AND INHIBITOR AVG

Huai, Q., Xia, Y., Chen, Y., Callahan, B., Li, N., Ke, H.

(2001) J Biological Chem 276: 38210-38216

Released	2001-04-04
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Solanum lycopersicum
Macromolecule	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 2 (protein)
Unique Ligands	AVG, PLP

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1KAF \| pdb_00001kaf	Download File View File

DNA Binding Domain Of The Phage T4 Transcription Factor MotA (AA105-211)

Li, N., Sickmier, E.A., Zhang, R., Joachimiak, A., White, S.W.

(2002) Mol Microbiol 43: 1079-1088

Released	2001-11-21
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Tequatrovirus T4
Macromolecule	Transcription regulatory protein MOTA (protein)

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1KP6 \| pdb_00001kp6	Download File View File

USTILAGO MAYDIS KILLER TOXIN KP6 ALPHA-SUBUNIT

Li, N., Erman, M., Pangborn, W., Duax, W.L., Park, C.-M., Bruenn, J., Ghosh, D.

(1999) J Biological Chem 274: 20425-20431

Released	1999-07-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycosarcoma maydis
Macromolecule	PROTEIN (TOXIN) (protein)
Unique Ligands	SO4

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1LLF \| pdb_00001llf	Download File View File

Cholesterol Esterase (Candida Cylindracea) Crystal Structure at 1.4A resolution

Pletnev, V., Addlagatta, A., Wawrzak, Z., Duax, W.

(2003) Acta Crystallogr D Biol Crystallogr 59: 50-56

Released	2003-01-07
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Limtongozyma cylindracea
Macromolecule	Lipase 3 (protein)
Unique Ligands	F23
Unique branched monosaccharides	NAG

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1M53 \| pdb_00001m53	Download File View File

CRYSTAL STRUCTURE OF ISOMALTULOSE SYNTHASE (PALI) FROM KLEBSIELLA SP. LX3

Li, N., Swaminathan, K.

(2003) J Biological Chem 278: 35428-35434

Released	2003-07-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Klebsiella sp. LX3
Macromolecule	Isomaltulose Synthase (protein)

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1S5I \| pdb_00001s5i	Download File View File

Fab (LNKB-2) of monoclonal antibody to Human Interleukin-2, crystal structure

Pletnev, V.Z., Goryacheva, E.A., Tsygannik, I.N., Nesmeyanov, V.A., Pletnev, S.V., Pangborn, W., Duax, W.

Bioorg Khim 30: 466-469

Released	2004-05-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus
Macromolecule	Fab-fragment of monoclonal antibody (protein)

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1WZA \| pdb_00001wza	Download File View File

Crystal structure of alpha-amylase from H.orenii

Sivakumar, N., Swaminathan, K., Li, N.

(2006) FEBS Lett 580: 2646-2652

Released	2006-04-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Halothermothrix orenii
Macromolecule	alpha-amylase A (protein)
Unique Ligands	CA

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2AXE \| pdb_00002axe	Download File View File

IODINATED COMPLEX OF ACETYL XYLAN ESTERASE AT 1.80 ANGSTROMS

Ghosh, D., Erman, M., Sawicki, M.W., Lala, P., Weeks, D.R., Li, N., Pangborn, W., Thiel, D.J., Jornvall, H., Eyzaguirre, J.

(1999) Acta Crystallogr D Biol Crystallogr 55: 779-784

Released	1999-05-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Talaromyces purpureogenus
Macromolecule	ACETYL XYLAN ESTERASE (protein)
Unique Ligands	SO4

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3J3R \| pdb_00003j3r	Download File View File

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.

(2013) J Biological Chem 288: 17597-17608

Released	2013-05-15
Method	ELECTRON MICROSCOPY 9.4 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Adapter protein MecA 1 (protein) Negative regulator of genetic competence ClpC/MecB (protein)

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3J3S \| pdb_00003j3s	Download File View File

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.

(2013) J Biological Chem 288: 17597-17608

Released	2013-05-15
Method	ELECTRON MICROSCOPY 11 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Adapter protein MecA 1 (protein) Negative regulator of genetic competence ClpC/MecB (protein)

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3J3T \| pdb_00003j3t	Download File View File

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.

(2013) J Biological Chem 288: 17597-17608

Released	2013-05-15
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Adapter protein MecA 1 (protein) Negative regulator of genetic competence ClpC/MecB (protein)

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3J3U \| pdb_00003j3u	Download File View File

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.

(2013) J Biological Chem 288: 17597-17608

Released	2013-05-15
Method	ELECTRON MICROSCOPY 10 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Adapter protein MecA 1 (protein) Negative regulator of genetic competence ClpC/MecB (protein)

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3J3V \| pdb_00003j3v	Download File View File

Atomic model of the immature 50S subunit from Bacillus subtilis (state I-a)

Li, N., Guo, Q., Zhang, Y., Yuan, Y., Ma, C., Lei, J., Gao, N.

(2013) Nucleic Acids Res 41: 7073-7083

Released	2013-06-12
Method	ELECTRON MICROSCOPY 13.3 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Unique protein chains: 22 Unique nucleic acid chains: 2

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3J3W \| pdb_00003j3w	Download File View File

Atomic model of the immature 50S subunit from Bacillus subtilis (state II-a)

Li, N., Guo, Q., Zhang, Y., Yuan, Y., Ma, C., Lei, J., Gao, N.

(2013) Nucleic Acids Res 41: 7073-7083

Released	2013-06-12
Method	ELECTRON MICROSCOPY 10.7 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Unique protein chains: 19 Unique nucleic acid chains: 1