RCSB PDB: Search

1BZW \| pdb_00001bzw	Download File View File

PEANUT LECTIN COMPLEXED WITH C-LACTOSE

Ravishankar, R., Surolia, A., Vijayan, M., Lim, S., Kishi, Y.

(1998) J Am Chem Soc 120: 11297-11303

Released	1998-11-11
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Arachis hypogaea
Macromolecule	PROTEIN (PEANUT LECTIN) (protein)
Unique Ligands	CA, MN
Unique branched monosaccharides	BGC, GAL, GLC

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2LRN \| pdb_00002lrn	Download File View File

Solution structure of a thiol:disulfide interchange protein from Bacteroides sp.

Harris, R., Bandaranayake, A.D., Banu, R., Bonanno, J.B., Calarese, D.A., Celikgil, A., Chamala, S., Chan, M.K., Chaparro, R., Evans, B., Garforth, S., Gizzi, A., Hillerich, B., Kar, A., Lafleur, J., Lim, S., Love, J., Matikainen, B., Patel, H., Seidel, R.D., Smith, B., Stead, M., Girvin, M.E., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-04-25
Method	SOLUTION NMR
Organisms	Bacteroides sp. 4_3_47FAA
Macromolecule	Thiol:disulfide interchange protein (protein)

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2LRT \| pdb_00002lrt	Download File View File

Solution structure of the uncharacterized thioredoxin-like protein BVU_1432 from Bacteroides vulgatus

Harris, R., Bandaranayake, A.D., Banu, R., Bonanno, J.B., Calarese, D.A., Celikgil, A., Chamala, S., Chan, M.K., Chaparro, R., Evans, B., Garforth, S., Gizzi, A., Hillerich, B., Kar, A., Lafleur, J., Lim, S., Love, J., Matikainen, B., Patel, H., Seidel, R.D., Smith, B., Stead, M., Girvin, M.E., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-04-25
Method	SOLUTION NMR
Organisms	Phocaeicola vulgatus ATCC 8482
Macromolecule	Uncharacterized protein (protein)

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2LS5 \| pdb_00002ls5	Download File View File

Solution structure of a putative protein disulfide isomerase from Bacteroides thetaiotaomicron

Harris, R., Bandaranayake, A.D., Banu, R., Bonanno, J.B., Calarese, D.A., Celikgil, A., Chamala, S., Chan, M.K., Chaparro, R., Evans, B., Garforth, S., Gizzi, A., Hillerich, B., Kar, A., Lafleur, J., Lim, S., Love, J., Matikainen, B., Patel, H., Seidel, R.D., Smith, B., Stead, M., Girvin, M.E., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-05-09
Method	SOLUTION NMR
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	Uncharacterized protein (protein)

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2LS8 \| pdb_00002ls8	Download File View File

Solution structure of human C-type lectin domain family 4 member D

Harris, R., Gaudette, J., Bandaranayake, A.D., Banu, R., Bonanno, J.B., Calarese, D.A., Celikgil, A., Chamala, S., Chan, M.K., Chaparro, R., Evans, B., Garforth, S., Gizzi, A., Hillerich, B., Kar, A., Lafleur, J., Lim, S., Love, J., Matikainen, B., Patel, H., Seidel, R.D., Smith, B., Stead, M., Girvin, M.E., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-05-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	C-type lectin domain family 4 member D (protein)

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2LST \| pdb_00002lst	Download File View File

Solution structure of a thioredoxin from Thermus thermophilus

Harris, R., Bandaranayake, A.D., Banu, R., Bonanno, J.B., Calarese, D.A., Celikgil, A., Chamala, S., Chan, M.K., Chaparro, R., Evans, B., Garforth, S., Gizzi, A., Hillerich, B., Kar, A., Lafleur, J., Lim, S., Love, J., Matikainen, B., Patel, H., Seidel, R.D., Smith, B., Stead, M., Girvin, M.E., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-05-16
Method	SOLUTION NMR
Organisms	Thermus thermophilus HB27
Macromolecule	Thioredoxin (protein)

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2MAT \| pdb_00002mat	Download File View File

E.COLI METHIONINE AMINOPEPTIDASE AT 1.9 ANGSTROM RESOLUTION

Lowther, W.T., Orville, A.M., Madden, D.T., Lim, S., Rich, D.H., Matthews, B.W.

(1999) Biochemistry 38: 7678-7688

Released	1999-06-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (METHIONINE AMINOPEPTIDASE) (protein)
Unique Ligands	CO, NA

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2NA0 \| pdb_00002na0	Download File View File

NMR structure of Guanylyl Cyclase Activator Protein 1 (GCAP1) mutant V77E in a Ca2+-free/Mg2+-bound Activator State

Lim, S., Ames, J.B.

(2016) J Biological Chem 291: 4429-4441

Released	2015-12-30
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	Guanylyl cyclase-activating protein 1 (protein)

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3F0L \| pdb_00003f0l	Download File View File

Crystal structure of oxidized D105N Synechocystis sp. PcyA

Kohler, A.C., Gae, D.D.

(2010) Biochemistry 49: 6206-6218

Released	2009-10-13
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Phycocyanobilin:ferredoxin oxidoreductase (protein)
Unique Ligands	BLA, EDO

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3F0M \| pdb_00003f0m	Download File View File

Crystal structure of radical D105N Synechocystis sp. PcyA

Kohler, A.C., Gae, D.D.

(2010) Biochemistry 49: 6206-6218

Released	2009-10-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Phycocyanobilin:ferredoxin oxidoreductase (protein)
Unique Ligands	BLA, EDO

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3KX9 \| pdb_00003kx9	Download File View File

Engineering a closed form of the Archaeoglobus fulgidus ferritin by site directed mutagenesis

Johnson, E., Cascio, D., Sawaya, M.R.

(2013) J Biological Chem 288: 32663-32672

Released	2010-12-15
Method	X-RAY DIFFRACTION 2.101 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Ferritin (protein)
Unique Ligands	GOL

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3MAT \| pdb_00003mat	Download File View File

E.COLI METHIONINE AMINOPEPTIDASE TRANSITION-STATE INHIBITOR COMPLEX

Lowther, W.T., Orville, A.M., Madden, D.T., Lim, S., Rich, D.H., Matthews, B.W.

(1999) Biochemistry 38: 7678-7688

Released	1999-06-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	METHIONINE AMINOPEPTIDASE (protein) bestatin-based inhibitor (3R)-amino-(2S)-hydroxyheptanoyl-l-Ala-l-Leu-l-Val-l-Phe-OMe (protein)
Unique Ligands	CO, NA

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3NB8 \| pdb_00003nb8	Download File View File

Crystal structure of oxidized H88Q Synechocystis sp. PCYA

Gae, D.D.

(2010) Biochemistry 49: 6206-6218

Released	2010-10-06
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Phycocyanobilin:ferredoxin oxidoreductase (protein)
Unique Ligands	BLA, EDO

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3NB9 \| pdb_00003nb9	Download File View File

Crystal structure of radical H88Q Synechocystis sp. PCYA

Gae, D.D.

(2010) Biochemistry 49: 6206-6218

Released	2010-10-06
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Phycocyanobilin:ferredoxin oxidoreductase (protein)
Unique Ligands	BLA, EDO

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3S44 \| pdb_00003s44	Download File View File

Crystal Structure of Pasteurella multocida sialyltransferase M144D mutant with CMP bound

Sugiarto, G., Lau, K., Li, Y., Lim, S., Ames, J.B., Le, D.-T., Fisher, A.J., Chen, X.

(2012) ACS Chem Biol 7: 1232-1240

Released	2012-08-15
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Pasteurella multocida
Macromolecule	Alpha-2,3/2,6-sialyltransferase/sialidase (protein)
Unique Ligands	FN5

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4E3A \| pdb_00004e3a	Download File View File

CRYSTAL STRUCTURE OF probable sugar kinase protein from Rhizobium etli CFN 42

Malashkevich, V.N., Bhosle, R., Toro, R., Hillerich, B., Gizzi, A., Garforth, S., Kar, A., Chan, M.K., Lafluer, J., Patel, H., Matikainen, B., Chamala, S., Lim, S., Celikgil, A., Villegas, G., Evans, B., Zenchek, W., Love, J., Fiser, A., Khafizov, K., Seidel, R., Bonanno, J.B., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Rhizobium etli CFN 42
Macromolecule	sugar kinase protein (protein)
Unique Ligands	ADN

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4E3E \| pdb_00004e3e	Download File View File

CRYSTAL STRUCTURE OF putative MaoC domain protein dehydratase from Chloroflexus aurantiacus J-10-fl

Malashkevich, V.N., Bhosle, R., Toro, R., Hillerich, B., Gizzi, A., Garforth, S., Kar, A., Chan, M.K., Lafluer, J., Patel, H., Matikainen, B., Chamala, S., Lim, S., Celikgil, A., Villegas, G., Evans, B., Zenchek, W., Love, J., Fiser, A., Khafizov, K., Seidel, R., Bonanno, J.B., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Chloroflexus aurantiacus J-10-fl
Macromolecule	MaoC domain protein dehydratase (protein)
Unique Ligands	SO4

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4E4G \| pdb_00004e4g	Download File View File

Crystal structure of putative Methylmalonate-semialdehyde dehydrogenase from Sinorhizobium meliloti 1021

Malashkevich, V.N., Bhosle, R., Toro, R., Hillerich, B., Gizzi, A., Garforth, S., Kar, A., Chan, M.K., Lafluer, J., Patel, H., Matikainen, B., Chamala, S., Lim, S., Celikgil, A., Villegas, G., Evans, B., Zenchek, W., Love, J., Fiser, A., Khafizov, K., Seidel, R., Bonanno, J.B., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-03-28
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Sinorhizobium meliloti 1021
Macromolecule	Methylmalonate-semialdehyde dehydrogenase (protein)

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4E6M \| pdb_00004e6m	Download File View File

Crystal structure of Putative dehydratase protein from Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella typhimurium)

Malashkevich, V.N., Bhosle, R., Toro, R., Hillerich, B., Gizzi, A., Garforth, S., Kar, A., Chan, M.K., Lafluer, J., Patel, H., Matikainen, B., Chamala, S., Lim, S., Celikgil, A., Villegas, G., Evans, B., Zenchek, W., Love, J., Fiser, A., Khafizov, K., Seidel, R., Bonanno, J.B., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-04-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Putative dehydratase protein (protein)
Unique Ligands	EPE, MG, MPD

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4EZB \| pdb_00004ezb	Download File View File

CRYSTAL STRUCTURE OF the Conserved hypothetical protein from Sinorhizobium meliloti 1021

Malashkevich, V.N., Bhosle, R., Toro, R., Hillerich, B., Gizzi, A., Garforth, S., Kar, A., Chan, M.K., Lafluer, J., Patel, H., Matikainen, B., Chamala, S., Lim, S., Celikgil, A., Villegas, G., Evans, B., Zenchek, W., Love, J., Fiser, A., Khafizov, K., Seidel, R., Bonanno, J.B., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-05-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Sinorhizobium meliloti 1021
Macromolecule	uncharacterized conserved protein (protein)

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4F3X \| pdb_00004f3x	Download File View File

Crystal structure of putative aldehyde dehydrogenase from Sinorhizobium meliloti 1021 complexed with NAD

Malashkevich, V.N., Bhosle, R., Toro, R., Hillerich, B., Gizzi, A., Garforth, S., Kar, A., Chan, M.K., Lafluer, J., Patel, H., Matikainen, B., Chamala, S., Lim, S., Celikgil, A., Villegas, G., Evans, B., Zenchek, W., Love, J., Fiser, A., Khafizov, K., Seidel, R., Bonanno, J.B., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-05-30
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Sinorhizobium meliloti 1021
Macromolecule	Putative aldehyde dehydrogenase (protein)
Unique Ligands	GOL, NAD

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4FFU \| pdb_00004ffu	Download File View File

CRYSTAL STRUCTURE OF putative MaoC-like (monoamine oxidase-like) protein, similar to NodN from Sinorhizo Bium meliloti 1021

Malashkevich, V.N., Bhosle, R., Toro, R., Hillerich, B., Gizzi, A., Garforth, S., Kar, A., Chan, M.K., Lafluer, J., Patel, H., Matikainen, B., Chamala, S., Lim, S., Celikgil, A., Villegas, G., Evans, B., Zenchek, W., Love, J., Fiser, A., Khafizov, K., Seidel, R., Bonanno, J.B., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-06-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sinorhizobium meliloti 1021
Macromolecule	oxidase (protein)
Unique Ligands	CL

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4G2N \| pdb_00004g2n	Download File View File

Crystal structure of putative D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding from Polaromonas sp. JS6 66

Malashkevich, V.N., Bhosle, R., Toro, R., Hillerich, B., Gizzi, A., Garforth, S., Kar, A., Chan, M.K., Lafluer, J., Patel, H., Matikainen, B., Chamala, S., Lim, S., Celikgil, A., Villegas, G., Evans, B., Zenchek, W., Love, J., Fiser, A., Khafizov, K., Seidel, R., Bonanno, J.B., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-07-25
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Polaromonas sp. JS666
Macromolecule	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (protein)
Unique Ligands	CL, GOL

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4GWB \| pdb_00004gwb	Download File View File

Crystal structure of putative Peptide methionine sulfoxide reductase from Sinorhizobium meliloti 1021

Malashkevich, V.N., Bhosle, R., Toro, R., Hillerich, B., Gizzi, A., Garforth, S., Kar, A., Chan, M.K., Lafluer, J., Patel, H., Matikainen, B., Chamala, S., Lim, S., Celikgil, A., Villegas, G., Evans, B., Zenchek, W., Love, J., Fiser, A., Khafizov, K., Seidel, R., Bonanno, J.B., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-09-19
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Sinorhizobium meliloti 1021
Macromolecule	Peptide methionine sulfoxide reductase MsrA 3 (protein)
Unique Ligands	CA, CL

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4HAD \| pdb_00004had	Download File View File

Crystal structure of probable oxidoreductase protein from Rhizobium etli CFN 42

Malashkevich, V.N., Bhosle, R., Toro, R., Hillerich, B., Gizzi, A., Garforth, S., Kar, A., Chan, M.K., Lafluer, J., Patel, H., Matikainen, B., Chamala, S., Lim, S., Celikgil, A., Villegas, G., Evans, B., Zenchek, W., Love, J., Fiser, A., Khafizov, K., Seidel, R., Bonanno, J.B., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-10-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rhizobium etli CFN 42
Macromolecule	Probable oxidoreductase protein (protein)
Unique Ligands	NA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BZW | pdb_00001bzw

2LRN | pdb_00002lrn

2LRT | pdb_00002lrt

2LS5 | pdb_00002ls5

2LS8 | pdb_00002ls8

2LST | pdb_00002lst

2MAT | pdb_00002mat

2NA0 | pdb_00002na0

3F0L | pdb_00003f0l

3F0M | pdb_00003f0m

3KX9 | pdb_00003kx9

3MAT | pdb_00003mat

3NB8 | pdb_00003nb8

3NB9 | pdb_00003nb9

3S44 | pdb_00003s44

4E3A | pdb_00004e3a

4E3E | pdb_00004e3e

4E4G | pdb_00004e4g

4E6M | pdb_00004e6m

4EZB | pdb_00004ezb

4F3X | pdb_00004f3x

4FFU | pdb_00004ffu

4G2N | pdb_00004g2n

4GWB | pdb_00004gwb

4HAD | pdb_00004had