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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Liu, C.P."

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Search Summary

This query matches 32 Structures.

Refinements

Structure Determination Methodology

experimental (32)

Scientific Name of Source Organism

	Homo sapiens (26)
	synthetic construct (5)
	Mus musculus (4)
	Saccharomyces cerevisiae S288C (3)
	Escherichia coli (2)
	Aspergillus fumigatus Af293 (1)
	Drosophila (1)
	Drosophila melanogaster (1)
	Streptococcus mutans (1)

Taxonomy

	Eukaryota (31)
	other sequences (5)
	Bacteria (3)

Experimental Method

	X-RAY DIFFRACTION (18)
	ELECTRON MICROSCOPY (14)

Polymer Entity Type

	Protein (32)
	DNA (11)
	RNA (4)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (4)
	2.5 - 3.0 (6)
	3.0 - 3.5 (5)
	3.5 - 4.0 (10)
	4.0 - 4.5 (2)
	> 4.5 (4)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (1)
	2015 - 2019 (6)
	2020 - 2024 (24)

Enzyme Classification Name

	Transferases (3)
	Hydrolases (3)

Symmetry Type

	Asymmetric (23)
	Cyclic (9)

SCOP Classification

	All alpha proteins (1)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)

AllSelected

1 to 25 of 32 Structures

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3DEZ \| pdb_00003dez	Download File View File

Crystal structure of Orotate phosphoribosyltransferase from Streptococcus mutans

Liu, C.P., Gao, Z.Q., Hou, H.F., Li, L.F., Su, X.D., Dong, Y.H.

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 498-502

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptococcus mutans
Macromolecule	Orotate phosphoribosyltransferase (protein)
Unique Ligands	SO4

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4HGA \| pdb_00004hga	Download File View File

Structure of the variant histone H3.3-H4 heterodimer in complex with its chaperone DAXX

Liu, C.P., Xiong, C.Y., Wang, M.Z., Yu, Z.L., Yang, N., Chen, P., Zhang, Z.G., Li, G.H., Xu, R.M.

(2012) Nat Struct Mol Biol 19: 1287-1292

Released	2012-11-07
Method	X-RAY DIFFRACTION 2.799 Å
Organisms	Homo sapiens
Macromolecule	Death domain-associated protein 6 (protein) Histone H3.3 (protein) Histone H4 (protein)
Unique Ligands	PC4

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5EX7 \| pdb_00005ex7	Download File View File

Crystal structure of Brat NHL domain in complex with an 8-nt hunchback mRNA

Wang, Y., Yu, Z., Wang, M., Liu, C.P., Yang, N., Xu, R.M.

To be published

Released	2015-12-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Drosophila Drosophila melanogaster
Macromolecule	Brain tumor protein (protein) RNA (5'-R(PUPUPUPGPUPUPGPU)-3') (nucleic acid)

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5H1J \| pdb_00005h1j	Download File View File

Crystal structure of WD40 repeat domains of Gemin5

Jin, W., Wang, Y., Liu, C.P., Yang, N., Jin, M., Cong, Y., Wang, M., Xu, R.M.

(2016) Genes Dev 30: 2391-2403

Released	2016-11-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Gem-associated protein 5 (protein)

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5H1K \| pdb_00005h1k	Download File View File

Crystal structure of WD40 repeat domains of Gemin5 in complex with 13-nt U4 snRNA fragment

Wang, Y., Jin, W., Liu, C.P., Yang, N., Jin, M., Cong, Y., Wang, M., Xu, R.M.

(2016) Genes Dev 30: 2391-2403

Released	2016-11-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Gem-associated protein 5 (protein) U4 snRNA (5'-R(GPCPAPAPUPUPUPUPUPGPAPCP*A)-3') (nucleic acid)

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5H1L \| pdb_00005h1l	Download File View File

Crystal structure of WD40 repeat domains of Gemin5 in complex with 7-nt U4 snRNA fragment

Jin, W., Wang, Y., Liu, C.P., Yang, N., Jin, M., Cong, Y., Wang, M., Xu, R.M.

(2016) Genes Dev 30: 2391-2403

Released	2016-11-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Gem-associated protein 5 (protein) U4 snRNA (5'-R(APUPUPUPUPUP*G)-3') (nucleic acid)
Unique Ligands	GOL

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5H1M \| pdb_00005h1m	Download File View File

Crystal structure of WD40 repeat domains of Gemin5 in complex with M7G

Jin, W., Wang, Y., Liu, C.P., Yang, N., Jin, M., Cong, Y., Wang, M., Xu, R.M.

(2016) Genes Dev 30: 2391-2403

Released	2016-11-23
Method	X-RAY DIFFRACTION 2.492 Å
Organisms	Homo sapiens
Macromolecule	Gem-associated protein 5 (protein)
Unique Ligands	M7G

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6INE \| pdb_00006ine	Download File View File

Crystal Structure of human ASH1L-MRG15 complex

Hou, P., Huang, C., Liu, C.P., Yu, T., Yin, Y., Zhu, B., Xu, R.M.

(2019) Structure 27: 837

Released	2019-03-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase ASH1L (protein) Mortality factor 4-like protein 1 (protein)
Unique Ligands	GOL, SAM, ZN

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6LXD \| pdb_00006lxd	Download File View File

Pri-miRNA bound DROSHA-DGCR8 complex

Jin, W., Wang, J., Liu, C.P., Wang, H.W., Xu, R.M.

(2020) Mol Cell 78: 423

Released	2020-04-15
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens
Macromolecule	Microprocessor complex subunit DGCR8 (protein) Ribonuclease 3 (protein) RNA (102-mer) (nucleic acid)
Unique Ligands	ZN

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6LXE \| pdb_00006lxe	Download File View File

DROSHA-DGCR8 complex

Jin, W., Wang, J., Liu, C.P., Wang, H.W., Xu, R.M.

(2020) Mol Cell 78: 423

Released	2020-04-15
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens
Macromolecule	Microprocessor complex subunit DGCR8 (protein) Ribonuclease 3 (protein)
Unique Ligands	ZN

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7E9C \| pdb_00007e9c	Download File View File

Cryo-EM structure of the 1:1 Orc1 BAH domain in complex with nucleosome

Jiang, H., Yu, C., Liu, C.P., Han, X., Yu, Z., Xu, R.M.

To be published

Released	2022-09-07
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Escherichia coli Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

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7E9F \| pdb_00007e9f	Download File View File

Cryo-EM structure of the 2:1 Orc1 BAH domain in complex with nucleosome

Jiang, H., Yu, C., Liu, C.P., Han, X., Yu, Z., Xu, R.M.

To be published

Released	2022-09-07
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Escherichia coli Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

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7V6P \| pdb_00007v6p	Download File View File

Crystal structure of human sNASP TPR domain

Liu, C.P., Xu, R.M.

(2021) Genes Dev 35: 1610-1624

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Isoform 2 of Nuclear autoantigenic sperm protein (protein)
Unique Ligands	CA, GOL, PEG

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7V6Q \| pdb_00007v6q	Download File View File

Crystal structure of sNASP-ASF1A-H3.1-H4 complex

Liu, C.P., Xu, R.M.

(2021) Genes Dev 35: 1610-1624

Released	2021-12-29
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Histone H3.1 (protein) Histone H4 (protein) Histone chaperone ASF1A (protein) Isoform 2 of Nuclear autoantigenic sperm protein (protein)
Unique Ligands	1PE, GOL

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7V9F \| pdb_00007v9f	Download File View File

Selenomethionine mutant (L740Sem) of BEN4 domain of protein Bend3 with DNA

Zhang, J., Zhang, Y., You, Q., Huang, C., Zhang, T., Wang, M., Zhang, T., Yang, X., Xiong, J., Li, Y., Liu, C.P., Zhang, Z., Xu, R.M., Zhu, B.

(2022) Science 375: 1053-1058

Released	2022-02-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	BEN domain-containing protein 3 (protein) DNA (5'-D(GPCPAPCPCPGPCPGPTPGPGPGPGPCPCPA)-3') (nucleic acid) DNA (5'-D(TPGPGPCPCPCPCPAPCPGPCPGPGPTPGPC)-3') (nucleic acid)
Unique Ligands	CIT

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7V9G \| pdb_00007v9g	Download File View File

Native BEN4 domain of protein Bend3 with DNA

Zhang, J., Zhang, Y., You, Q., Huang, C., Zhang, T., Wang, M., Zhang, T., Yang, X., Xiong, J., Li, Y., Liu, C.P., Zhang, Z., Xu, R.M., Zhu, B.

(2022) Science 375: 1053-1058

Released	2022-02-16
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	BEN domain-containing protein 3 (protein) DNA (5'-D(GPCPAPCPCPGPCPGPTPGPGPGPGPCPCPA)-3') (nucleic acid) DNA (5'-D(TPGPGPCPCPCPCPAPCPGPCPGPGPTPGPC)-3') (nucleic acid)

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7V9H \| pdb_00007v9h	Download File View File

The BEN3 domain of protein Bend3

Zhang, J., Zhang, Y., You, Q., Huang, C., Zhang, T., Wang, M., Zhang, T., Yang, X., Xiong, J., Li, Y., Liu, C.P., Zhang, Z., Xu, R.M., Zhu, B.

(2022) Science 375: 1053-1058

Released	2022-02-16
Method	X-RAY DIFFRACTION 2.692 Å
Organisms	Mus musculus
Macromolecule	BEN domain-containing protein 3 (protein)

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7V9I \| pdb_00007v9i	Download File View File

The Monomer mutant of BEN4 domain of protein Bend3 with DNA

Zhang, J., Zhang, Y., You, Q., Huang, C., Zhang, T., Wang, M., Zhang, T., Yang, X., Xiong, J., Li, Y., Liu, C.P., Zhang, Z., Xu, R.M., Zhu, B.

(2022) Science 375: 1053-1058

Released	2022-02-16
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	BEN domain-containing protein 3 (protein) DNA (5'-D(APCPCPGPCPGPTPGPGPGPGPC)-3') (nucleic acid) DNA (5'-D(GPCPCPCPCPAPCPGPCPGPGPT)-3') (nucleic acid)

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7XAY \| pdb_00007xay	Download File View File

Crystal structure of Hat1-Hat2-Asf1-H3-H4

Yue, Y., Yang, W.S., Xu, R.M.

(2022) Genes Dev 36: 408-413

Released	2022-05-18
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Aspergillus fumigatus Af293 Saccharomyces cerevisiae S288C
Macromolecule	Histone H3 (protein) Histone H4 (protein) Histone acetyltransferase type B subunit 2 (protein) Histone chaperone asf1 (protein) Soluble cytochrome b562,Histone acetyltransferase type B catalytic subunit (protein)
Unique Ligands	COA

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7Y5K \| pdb_00007y5k	Download File View File

Crystal structure of human CAF-1 core complex in spacegroup C2221

Liu, C.P., Wang, M.Z., Xu, R.M.

(2023) Science 381: eadd8673-eadd8673

Released	2023-08-16
Method	X-RAY DIFFRACTION 3.48 Å
Organisms	Homo sapiens
Macromolecule	Chromatin assembly factor 1 subunit A (protein) Chromatin assembly factor 1 subunit B (protein) Histone-binding protein RBBP4 (protein)
Unique Ligands	GOL

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7Y5L \| pdb_00007y5l	Download File View File

Crystal structure of human CAF-1 core complex in spacegroup C2

Liu, C.P., Wang, M.Z., Xu, R.M.

(2023) Science 381: eadd8673-eadd8673

Released	2023-08-16
Method	X-RAY DIFFRACTION 3.42 Å
Organisms	Homo sapiens
Macromolecule	Chromatin assembly factor 1 subunit A (protein) Chromatin assembly factor 1 subunit B (protein) Histone-binding protein RBBP4 (protein)
Unique Ligands	GOL

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7Y5O \| pdb_00007y5o	Download File View File

Crystal structure of human CAF-1 core complex in spacegroup P21

Liu, C.P., Wang, M.Z., Xu, R.M.

(2023) Science 381: eadd8673-eadd8673

Released	2023-08-16
Method	X-RAY DIFFRACTION 3.57 Å
Organisms	Homo sapiens
Macromolecule	Chromatin assembly factor 1 subunit A (protein) Chromatin assembly factor 1 subunit B (protein) Histone-binding protein RBBP4 (protein)
Unique Ligands	GOL

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7Y5U \| pdb_00007y5u	Download File View File

Cryo-EM structure of the monomeric human CAF1LC-H3-H4 complex

Liu, C.P., Yu, Z.Y., Yu, C., Xu, R.M.

(2023) Science 381: eadd8673-eadd8673

Released	2023-08-16
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Chromatin assembly factor 1 subunit A (protein) Chromatin assembly factor 1 subunit B (protein) Histone H3.1 (protein) Histone H4 (protein) Histone-binding protein RBBP4 (protein)

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7Y5V \| pdb_00007y5v	Download File View File

Cryo-EM structure of the dimeric human CAF1LC-H3-H4 complex

Liu, C.P., Yu, C., Yu, Z.Y., Xu, R.M.

(2023) Science 381: eadd8673-eadd8673

Released	2023-08-16
Method	ELECTRON MICROSCOPY 6.1 Å
Organisms	Homo sapiens
Macromolecule	Chromatin assembly factor 1 subunit A (protein) Chromatin assembly factor 1 subunit B (protein) Histone H3.1 (protein) Histone H4 (protein) Histone-binding protein RBBP4 (protein)

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7Y5W \| pdb_00007y5w	Download File View File

Cryo-EM structure of the left-handed Di-tetrasome

Liu, C.P., Yu, Z.Y., Yu, C., Xu, R.M.

(2023) Science 381: eadd8673-eadd8673

Released	2023-08-16
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Histone H3.1 (protein) Histone H4 (protein) Widom 601 DNA (147-MER) (nucleic acid)

1 to 25 of 32 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3DEZ | pdb_00003dez

4HGA | pdb_00004hga

5EX7 | pdb_00005ex7

5H1J | pdb_00005h1j

5H1K | pdb_00005h1k

5H1L | pdb_00005h1l

5H1M | pdb_00005h1m

6INE | pdb_00006ine

6LXD | pdb_00006lxd

6LXE | pdb_00006lxe

7E9C | pdb_00007e9c

7E9F | pdb_00007e9f

7V6P | pdb_00007v6p

7V6Q | pdb_00007v6q

7V9F | pdb_00007v9f

7V9G | pdb_00007v9g

7V9H | pdb_00007v9h

7V9I | pdb_00007v9i

7XAY | pdb_00007xay

7Y5K | pdb_00007y5k

7Y5L | pdb_00007y5l

7Y5O | pdb_00007y5o

7Y5U | pdb_00007y5u

7Y5V | pdb_00007y5v

7Y5W | pdb_00007y5w