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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Lopez-Blanco, J.R."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Homo sapiens (7)
	Streptococcus agalactiae (2)
	Legionella pneumophila (1)
	Mus musculus (1)
	Saccharomyces cerevisiae S288C (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (9)
	Bacteria (3)
	other sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (9)
	X-RAY DIFFRACTION (2)

Polymer Entity Type

	Protein (11)
	DNA (2)

Refinement Resolution (Å)

	2.5 - 3.0 (1)
	3.5 - 4.0 (2)
	4.0 - 4.5 (3)
	> 4.5 (5)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (1)
	2015 - 2019 (3)
	2020 - 2024 (5)

Enzyme Classification Name

	Transferases (2)
	Oxidoreductases (5)
	Hydrolases (2)
	Isomerases (1)

Symmetry Type

	Dihedral (5)
	Asymmetric (4)
	Cyclic (2)

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1 to 11 of 11 Structures

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3DKX \| pdb_00003dkx	Download File View File

Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), trigonal form, to 2.7 Ang resolution

Boer, D.R., Ruiz-Maso, J.A., Blanco, A.G., Vives-Llacer, M., Uson, I., Gomis-Ruth, F.X., Espinosa, M., Del Solar, G., Coll, M.

(2009) EMBO J 28: 1666-1678

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptococcus agalactiae
Macromolecule	Replication protein repB (protein)
Unique Ligands	CL, MG, MN

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3DKY \| pdb_00003dky	Download File View File

Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), tetragonal form, to 3.6 Ang resolution

Boer, D.R., Ruiz-Maso, J.A., Blanco, A.G., Vives-Llacer, M., Uson, I., Gomis-Ruth, F.X., Espinosa, M., Del Solar, G., Coll, M.

(2009) EMBO J 28: 1666-1678

Released	2009-06-30
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Streptococcus agalactiae
Macromolecule	Replication protein repB (protein)
Unique Ligands	MN

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3J47 \| pdb_00003j47	Download File View File

Formation of an intricate helical bundle dictates the assembly of the 26S proteasome lid

Estrin, E., Lopez-Blanco, J.R., Chacon, P., Martin, A.

(2013) Structure 21: 1624-1635

Released	2013-08-28
Method	ELECTRON MICROSCOPY 7.4 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 8

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5FUR \| pdb_00005fur	Download File View File

Structure of human TFIID-IIA bound to core promoter DNA

Louder, R.K., He, Y., Lopez-Blanco, J.R., Fang, J., Chacon, P., Nogales, E.

(2016) Nature 531: 604

Released	2016-04-06
Method	ELECTRON MICROSCOPY 8.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 9 Unique nucleic acid chains: 2

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6B5B \| pdb_00006b5b	Download File View File

Cryo-EM structure of the NAIP5-NLRC4-flagellin inflammasome

Tenthorey, J.L., Haloupek, N., Lopez-Blanco, J.R., Grob, P., Adamson, E., Hartenian, E., Lind, N.A., Bourgeois, N.M., Chacon, P., Nogales, E., Vance, R.E.

(2017) Science 358: 888-893

Released	2017-11-15
Method	ELECTRON MICROSCOPY 5.2 Å
Organisms	Legionella pneumophila Mus musculus
Macromolecule	Baculoviral IAP repeat-containing protein 1e (protein) Flagellin (protein) NLR family CARD domain-containing protein 4 (protein)

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6O9L \| pdb_00006o9l	Download File View File

Human holo-PIC in the closed state

Yan, C.L., Dodd, T., He, Y., Tainer, J.A., Tsutakawa, S.E., Ivanov, I.

(2019) Nat Struct Mol Biol 26: 397-406

Released	2019-05-29
Method	ELECTRON MICROSCOPY 7.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 31 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

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6ZN2 \| pdb_00006zn2	Download File View File

Partial structure of tyrosine hydroxylase in complex with dopamine showing the catalytic domain and an alpha-helix from the regulatory domain involved in dopamine binding.

Bueno-Carrasco, M.T., Cuellar, J., Santiago, C., Valpuesta, J.M., Martinez, A., Flydal, M.I.

(2022) Nat Commun 13: 74-74

Released	2021-12-08
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens
Macromolecule	SER-LEU-ILE-GLU-ASP-ALA-ARG-LYS-GLU-ARG-GLU-ALA-ALA-VAL-ALA-ALA-ALA-ALA (protein) Tyrosine 3-monooxygenase (protein)
Unique Ligands	FE, LDP

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6ZVP \| pdb_00006zvp	Download File View File

Atomic model of the EM-based structure of the full-length tyrosine hydroxylase in complex with dopamine (residues 40-497) in which the regulatory domain (residues 40-165) has been included only with the backbone atoms

Bueno-Carrasco, M.T., Cuellar, J., Santiago, C., Valpuesta, J.M., Martinez, A., Flydal, M.I.

(2022) Nat Commun 13: 74-74

Released	2021-11-17
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine 3-monooxygenase (protein)
Unique Ligands	FE, LDP

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6ZZU \| pdb_00006zzu	Download File View File

Partial structure of the substrate-free tyrosine hydroxylase (apo-TH).

Bueno-Carrasco, M.T., Cuellar, J., Santiago, C., Valpuesta, J.M., Martinez, A., Flydal, M.I.

(2022) Nat Commun 13: 74-74

Released	2021-11-17
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine 3-monooxygenase (protein)
Unique Ligands	FE

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7A2G \| pdb_00007a2g	Download File View File

Full-length structure of the substrate-free tyrosine hydroxylase (apo-TH).

Bueno-Carrasco, M.T., Cuellar, J., Santiago, C., Flydal, M.I., Martinez, A., Valpuesta, J.M.

(2022) Nat Commun 13: 74-74

Released	2021-12-01
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine 3-monooxygenase (protein)
Unique Ligands	FE

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7PIM \| pdb_00007pim	Download File View File

Partial structure of tyrosine hydroxylase lacking the first 35 residues in complex with dopamine.

Bueno-Carrasco, M.T., Cuellar, J., Santiago, C., Valpuesta, J.M., Martinez, A., Flydal, M.I.

(2022) Nat Commun 13: 74-74

Released	2021-12-22
Method	ELECTRON MICROSCOPY 4.6 Å
Organisms	Homo sapiens
Macromolecule	Regulatory domain alpha-helix (protein) Tyrosine 3-monooxygenase (protein)
Unique Ligands	FE, LDP

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3DKX | pdb_00003dkx

Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), trigonal form, to 2.7 Ang resolution

3DKY | pdb_00003dky

Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), tetragonal form, to 3.6 Ang resolution

3J47 | pdb_00003j47

Formation of an intricate helical bundle dictates the assembly of the 26S proteasome lid

5FUR | pdb_00005fur

Structure of human TFIID-IIA bound to core promoter DNA

6B5B | pdb_00006b5b

Cryo-EM structure of the NAIP5-NLRC4-flagellin inflammasome

6O9L | pdb_00006o9l

Human holo-PIC in the closed state

6ZN2 | pdb_00006zn2

Partial structure of tyrosine hydroxylase in complex with dopamine showing the catalytic domain and an alpha-helix from the regulatory domain involved in dopamine binding.

6ZVP | pdb_00006zvp

Atomic model of the EM-based structure of the full-length tyrosine hydroxylase in complex with dopamine (residues 40-497) in which the regulatory domain (residues 40-165) has been included only with the backbone atoms

6ZZU | pdb_00006zzu

Partial structure of the substrate-free tyrosine hydroxylase (apo-TH).

7A2G | pdb_00007a2g

Full-length structure of the substrate-free tyrosine hydroxylase (apo-TH).

7PIM | pdb_00007pim

Partial structure of tyrosine hydroxylase lacking the first 35 residues in complex with dopamine.

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

3DKX | pdb_00003dkx

3DKY | pdb_00003dky

3J47 | pdb_00003j47

5FUR | pdb_00005fur

6B5B | pdb_00006b5b

6O9L | pdb_00006o9l

6ZN2 | pdb_00006zn2

6ZVP | pdb_00006zvp

6ZZU | pdb_00006zzu

7A2G | pdb_00007a2g

7PIM | pdb_00007pim