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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Lucas, M."

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Search Summary

This query matches 28 Structures.

Refinements

Structure Determination Methodology

experimental (28)

Scientific Name of Source Organism

	Homo sapiens (9)
	Escherichia coli (6)
	Legionella pneumophila (4)
	Methanocaldococcus jannaschii (3)
	Legionella pneumophila subsp. pneumophila ATCC 43290 (2)
	Pseudomonas aeruginosa PAO1 (2)
	Thermotoga maritima (2)
	Thermus caliditerrae (2)
	Escherichia coli BL21(DE3) (1)
	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (1)

Taxonomy

	Bacteria (19)
	Eukaryota (9)
	Archaea (3)

Experimental Method

X-RAY DIFFRACTION (28)

Polymer Entity Type

	Protein (28)
	DNA (6)

Refinement Resolution (Å)

	1.5 - 2.0 (8)
	2.0 - 2.5 (4)
	2.5 - 3.0 (8)
	3.0 - 3.5 (6)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (3)
	2010 - 2014 (7)
	2015 - 2019 (9)
	2020 - 2024 (6)

Enzyme Classification Name

	Hydrolases (5)
	Transferases (4)
	Ligases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (23)
	Cyclic (6)

SCOP Classification

	Alpha and beta proteins (a+b) (10)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)

AllSelected

1 to 25 of 28 Structures

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1OMH \| pdb_00001omh	Download File View File

Conjugative Relaxase TrwC in complex with OriT Dna. Metal-free structure.

Guasch, A., Lucas, M., Moncalian, G., Cabezas, M., Perez-Luque, R., Gomis-Ruth, F.X., de la Cruz, F., Coll, M.

(2003) Nat Struct Biol 10: 1002-1010

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	trwC protein (protein) DNA OLIGONUCLEOTIDE (nucleic acid)
Unique Ligands	SO4

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1OSB \| pdb_00001osb	Download File View File

Conjugative Relaxase TrwC in complex with OriT Dna. Metal-free structure.

Guasch, A., Lucas, M., Moncalian, G., Cabezas, M., Perez-Luque, R., Gomis-Ruth, F.X., de la Cruz, F., Coll, M.

(2003) Nat Struct Biol 10: 1002-1010

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Escherichia coli
Macromolecule	TrwC protein (protein) Dna oligonucleotide (nucleic acid)
Unique Ligands	SO4

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1QX0 \| pdb_00001qx0	Download File View File

CONJUGATIVE RELAXASE TRWC IN COMPLEX WITH ORIT DNA. METAL-BOUND STRUCTURE

Guasch, A., Lucas, M., Moncalian, G., Cabezas, M., Prez-Luque, R., Gomis-Rth, F.X., de la Cruz, F., Coll, M.

(2003) Nat Struct Biol 10: 1002-1010

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Escherichia coli
Macromolecule	trwC protein (protein) DNA OLIGONUCLEOTIDE (nucleic acid)
Unique Ligands	SO4, ZN

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1S6M \| pdb_00001s6m	Download File View File

Conjugative Relaxase Trwc In Complex With Orit DNA. Metal-Bound Structure

Guasch, A., Lucas, M., Moncalian, G., Cabezas, M., Perez-Luque, R., Gomis-Ruth, F.X., de la Cruz, F., Coll, M.

(2006) J Mol Biology 358: 857-869

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Escherichia coli
Macromolecule	TrwC (protein) DNA (25-MER) (nucleic acid)
Unique Ligands	NI

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1ZM5 \| pdb_00001zm5	Download File View File

Conjugative Relaxase TRWC in complex with ORIT dna, cooper-bound structure

Boer, R., Russi, S., Guasch, A., Lucas, M., Blanco, A.G., Coll, M., de la Cruz, F.

(2006) J Mol Biology 358: 857-869

Released	2006-04-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	TrwC (protein) DNA (25-MER) (nucleic acid)
Unique Ligands	CU, SO4

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2CDM \| pdb_00002cdm	Download File View File

The structure of TrwC complexed with a 27-mer DNA comprising the recognition hairpin and the cleavage site

Boer, R., Russi, S., Guasch, A., Lucas, M., Blanco, A.G., Perez-Luque, R., Coll, M., de la Cruz, F.

(2006) J Mol Biology 358: 857

Released	2006-07-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	TRWC (protein) 5'-D(GPCPGPCPAPCPCPGPAPAP APGPGPTPGPCPGPTPAPTPTPGPTPCPTPAP*T)-3' (nucleic acid)
Unique Ligands	SO4

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3KPB \| pdb_00003kpb	Download File View File

Crystal Structure of the CBS domain pair of protein MJ0100 in complex with 5 -methylthioadenosine and S-adenosyl-L-methionine.

Lucas, M., Oyenarte, I., Garcia, I.G., Arribas, E.A., Encinar, J.A., Kortazar, D., Fernandez, J.A., Mato, J.M., Martinez-Cruz, L.A.

(2010) J Mol Biology 396: 800-820

Released	2010-01-12
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Uncharacterized protein MJ0100 (protein)
Unique Ligands	GOL, SAM

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3KPC \| pdb_00003kpc	Download File View File

Crystal Structure of the CBS domain pair of protein MJ0100 in complex with 5 -methylthioadenosine and S-adenosyl-L-methionine

Lucas, M., Oyenarte, I., Garcia, I.G., Arribas, E.A., Encinar, J.A., Kortazar, D., Fernandez, J.A., Mato, J.M., Martinez-Chantar, M.L., Martinez-Cruz, L.A.

(2010) J Mol Biology 396: 800-820

Released	2010-01-12
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Uncharacterized protein MJ0100 (protein)
Unique Ligands	MTA, SAM

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3KPD \| pdb_00003kpd	Download File View File

Crystal Structure of the CBS domain pair of protein MJ0100 in complex with 5 -methylthioadenosine and S-adenosyl-L-methionine.

Lucas, M., Oyenarte, I., Garcia, I.G., Arribas, E.A., Encinar, J.A., Kortazar, D., Fernandez, J.A., Mato, J.M., Martinez-Chantar, M.L., Martinez-Cruz, L.A.

(2010) J Mol Biology 396: 800-820

Released	2010-01-12
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Uncharacterized protein MJ0100 (protein)
Unique Ligands	MTA, SAM

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3QF7 \| pdb_00003qf7	Download File View File

The Mre11:Rad50 complex forms an ATP dependent molecular clamp in DNA double-strand break repair

Moeckel, C., Lammens, K.

(2011) Cell 145: 54-66

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	Mre11 (protein) Rad50 (protein)
Unique Ligands	ANP, MG

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3QG5 \| pdb_00003qg5	Download File View File

The Mre11:Rad50 complex forms an ATP dependent molecular clamp in DNA double-strand break repair

Lammens, K.

(2011) Cell 145: 54-66

Released	2011-04-20
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Thermotoga maritima
Macromolecule	Mre11 (protein) rad50 (protein)
Unique Ligands	GOL

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4GFG \| pdb_00004gfg	Download File View File

Crystal structure of spleen tyrosine kinase complexed with r9021

Lukacs, C., Slade, M.

To be published

Released	2013-08-14
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase SYK (protein)
Unique Ligands	0XF

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4KYI \| pdb_00004kyi	Download File View File

Crystal structure of the phospholipase VipD from Legionella pneumophila in complex with the human GTPase Rab5

Lucas, M., Gaspar, A.H., Pallara, C., Rojas, A.L., Fernandez-Recio, J., Machner, M.P., Hierro, A.

(2014) Proc Natl Acad Sci U S A 111: E3514-E3523

Released	2014-08-13
Method	X-RAY DIFFRACTION 3.075 Å
Organisms	Homo sapiens Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	Ras-related protein Rab-5C (protein) VipD (protein)
Unique Ligands	EDO, GNP, GOL, MG

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5F0J \| pdb_00005f0j	Download File View File

Structure of retromer VPS26-VPS35 subunits bound to SNX3

Lucas, M., Gershlick, D., Vidaurrazaga, A., Rojas, A.L., Bonifacino, J.S., Hierro, A.

(2016) Cell 167: 1623-1635.e14

Released	2016-12-07
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Sorting nexin-3 (protein) Vacuolar protein sorting-associated protein 26A (protein) Vacuolar protein sorting-associated protein 35 (protein)
Unique Ligands	EDO, GOL, SO4

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5F0K \| pdb_00005f0k	Download File View File

Structure of VPS35 N terminal region

Lucas, M., Gershlick, D., Vidaurrazaga, A., Rojas, A.L., Bonifacino, J.S., Hierro, A.

(2016) Cell 167: 1623-1635.e14

Released	2016-12-07
Method	X-RAY DIFFRACTION 3.074 Å
Organisms	Homo sapiens
Macromolecule	Vacuolar protein sorting-associated protein 35 (protein)
Unique Ligands	EDO, GOL, PG4, SO4

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5F0L \| pdb_00005f0l	Download File View File

Structure of retromer VPS26-VPS35 subunits bound to SNX3 and DMT1

Lucas, M., Gershlick, D., Vidaurrazaga, A., Rojas, A.L., Bonifacino, J.S., Hierro, A.

(2016) Cell 167: 1623-1635.e14

Released	2016-12-07
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Natural resistance-associated macrophage protein 2 (protein) Sorting nexin-3 (protein) Vacuolar protein sorting-associated protein 26A (protein) Vacuolar protein sorting-associated protein 35 (protein)
Unique Ligands	EDO, GOL, SO4

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5F0M \| pdb_00005f0m	Download File View File

Structure of retromer VPS26-VPS35 subunits bound to SNX3 and DMT1 (SeMet labeled)

Lucas, M., Gershlick, D., Vidaurrazaga, A., Rojas, A.L., Bonifacino, J.S., Hierro, A.

(2016) Cell 167: 1623-1635.e14

Released	2016-12-07
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Natural resistance-associated macrophage protein 2 (protein) Sorting nexin-3 (protein) Vacuolar protein sorting-associated protein 26A (protein) Vacuolar protein sorting-associated protein 35 (protein)
Unique Ligands	EDO, GOL, SO4

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5F0P \| pdb_00005f0p	Download File View File

Structure of retromer VPS26-VPS35 subunits bound to SNX3 and DMT1(L557M) (SeMet labeled)

Lucas, M., Gershlick, D., Vidaurrazaga, A., Rojas, A.L., Bonifacino, J.S., Hierro, A.

(2016) Cell 167: 1623-1635.e14

Released	2016-12-07
Method	X-RAY DIFFRACTION 2.78 Å
Organisms	Homo sapiens
Macromolecule	Natural resistance-associated macrophage protein 2 (protein) Sorting nexin-3 (protein) Vacuolar protein sorting-associated protein 26A (protein) Vacuolar protein sorting-associated protein 35 (protein)
Unique Ligands	EDO, GOL, SO4, ZN

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5MIY \| pdb_00005miy	Download File View File

Crystal structure of the E3 ubiquitin ligase RavN from Legionella pneumophila

Lucas, M., Abascal-Palacios, G., Rojas, A.L., Hierro, A.

(2018) PLoS Pathog 14: e1006897-e1006897

Released	2018-05-23
Method	X-RAY DIFFRACTION 1.717 Å
Organisms	Legionella pneumophila
Macromolecule	E3 ubiquitin ligase RavN (protein)
Unique Ligands	EDO, NA, SO4

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5OSH \| pdb_00005osh	Download File View File

Structure of retromer VPS29-VPS35C subunits complexed with RidL N-terminal domain (1-236)

Romano-Moreno, M., Rojas, A.L., Lucas, M., Isupov, M.N., Hierro, A.

(2017) Proc Natl Acad Sci U S A 114: E11151-E11160

Released	2017-12-13
Method	X-RAY DIFFRACTION 4.3 Å
Organisms	Homo sapiens Legionella pneumophila subsp. pneumophila ATCC 43290
Macromolecule	Interaptin (protein) Vacuolar protein sorting-associated protein 29 (protein) Vacuolar protein sorting-associated protein 35 (protein)

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5OSI \| pdb_00005osi	Download File View File

Structure of retromer VPS29-VPS35C subunits complexed with RidL harpin loop (163-176)

Romano-Moreno, M., Rojas, A.L., Lucas, M., Isupov, M.N., Hierro, A.

(2017) Proc Natl Acad Sci U S A 114: E11151-E11160

Released	2017-12-13
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Homo sapiens Legionella pneumophila subsp. pneumophila ATCC 43290
Macromolecule	Interaptin (protein) Vacuolar protein sorting-associated protein 29 (protein) Vacuolar protein sorting-associated protein 35 (protein)
Unique Ligands	EDO, NA

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5OT4 \| pdb_00005ot4	Download File View File

Structure of the Legionella pneumophila effector RidL (1-866)

Romano-Moreno, M., Rojas, A.L., Lucas, M., Isupov, M.N., Hierro, A.

(2017) Proc Natl Acad Sci U S A 114: E11151-E11160

Released	2017-12-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Legionella pneumophila
Macromolecule	Interaptin (protein)
Unique Ligands	GOL

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6RP4 \| pdb_00006rp4	Download File View File

CDT of SidD, deAMPylase from Legionella pneumophila

Tascon, I., Lucas, M., Rojas, A.L., Hierro, A.

(2020) PLoS Pathog 16: e1008734-e1008734

Released	2020-10-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Legionella pneumophila
Macromolecule	Adenosine monophosphate-protein hydrolase SidD (protein)
Unique Ligands	GOL, MG, NA, ZN

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6RRE \| pdb_00006rre	Download File View File

SidD, deAMPylase from Legionella pneumophila

Tascon, I., Lucas, M., Rojas, A.L., Hierro, A.

(2020) PLoS Pathog 16: e1008734-e1008734

Released	2020-10-07
Method	X-RAY DIFFRACTION 3.586 Å
Organisms	Legionella pneumophila
Macromolecule	Adenosine monophosphate-protein hydrolase SidD (protein)
Unique Ligands	MG

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6TE4 \| pdb_00006te4	Download File View File

Structural insights into Pseudomonas aeruginosa Type six secretion system exported effector 8: Tse8 in complex with a peptide

Sainz-Polo, M.A., Capuni, R., Lucas, M., Altuna, J., Fucini, P., Montanchez, I., Albesa-Jove, D.

(2020) J Struct Biol 212: 107651-107651

Released	2020-11-04
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Escherichia coli BL21(DE3) Pseudomonas aeruginosa PAO1
Macromolecule	Pro-Pro-Leu-Ala-Ser-Lys (protein) Tse8 (protein)

1 to 25 of 28 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1OMH | pdb_00001omh

1OSB | pdb_00001osb

1QX0 | pdb_00001qx0

1S6M | pdb_00001s6m

1ZM5 | pdb_00001zm5

2CDM | pdb_00002cdm

3KPB | pdb_00003kpb

3KPC | pdb_00003kpc

3KPD | pdb_00003kpd

3QF7 | pdb_00003qf7

3QG5 | pdb_00003qg5

4GFG | pdb_00004gfg

4KYI | pdb_00004kyi

5F0J | pdb_00005f0j

5F0K | pdb_00005f0k

5F0L | pdb_00005f0l

5F0M | pdb_00005f0m

5F0P | pdb_00005f0p

5MIY | pdb_00005miy

5OSH | pdb_00005osh

5OSI | pdb_00005osi

5OT4 | pdb_00005ot4

6RP4 | pdb_00006rp4

6RRE | pdb_00006rre

6TE4 | pdb_00006te4