RCSB PDB: Search

1OOE \| pdb_00001ooe	Download File View File

Structural Genomics of Caenorhabditis elegans : Dihydropteridine reductase

Symersky, J., Li, S., Nagy, L., Qiu, S., Lin, G., Tsao, J., Luo, D., Carson, M., DeLucas, L., Luo, M., Southeast Collaboratory for Structural Genomics (SECSG)

(2003) Proteins 53: 944-946

Released	2003-03-18
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Caenorhabditis elegans
Macromolecule	Dihydropteridine reductase (protein)
Unique Ligands	MES

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1PGV \| pdb_00001pgv	Download File View File

Structural Genomics of Caenorhabditis elegans: tropomodulin C-terminal domain

Symersky, J., Lu, S., Li, S., Chen, L., Meehan, E., Luo, M., Qiu, S., Bunzel, R.J., Luo, D., Arabashi, A., Nagy, L.A., Lin, G., Luan, W.C.-H., Carson, M., Gray, R., Huang, W., Southeast Collaboratory for Structural Genomics (SECSG)

(2004) Proteins 56: 384-386

Released	2003-06-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Caenorhabditis elegans
Macromolecule	tropomodulin TMD-1 (protein)

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1PZV \| pdb_00001pzv	Download File View File

Crystal structures of two UBC (E2) enzymes of the ubiquitin-conjugating system in Caenorhabditis elegans

Schormann, N., Lin, G., Li, S., Symersky, J., Qiu, S., Finley, J., Luo, D., Stanton, A., Carson, M., Luo, M., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Caenorhabditis elegans
Macromolecule	Probable ubiquitin-conjugating enzyme E2-19 kDa (protein)

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1Q34 \| pdb_00001q34	Download File View File

Crystal structures of two UBC (E2) enzymes of the ubiquitin-conjugating system in Caenorhabditis elegans

Schormann, N., Lin, G., Li, S., Symersky, J., Qiu, S., Finley, J., Luo, D., Stanton, A., Carson, M., Luo, M., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2003-08-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Caenorhabditis elegans
Macromolecule	Ubiquitin-conjugating enzyme E2-21.5 kDa (protein)

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1R9H \| pdb_00001r9h	Download File View File

Structural Genomics of C.elegans: FKBP-type Peptidylprolyl Isomerase

Li, S., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2003-12-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Caenorhabditis elegans
Macromolecule	FK506 Binding protein family (protein)

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1SCZ \| pdb_00001scz	Download File View File

Improved structural model for the catalytic domain of E.coli dihydrolipoamide succinyltransferase

Schormann, N., Symersky, J., Carson, M., Luo, M., Tsao, J., Johnson, D., Huang, W.-Y., Pruett, P., Lin, G., Li, S., Qiu, S., Arabashi, A., Bunzel, B., Luo, D., Nagy, L., Gray, R., Luan, C.-H., Zhang, Z., Lu, S., DeLucas, L.

To be published

Released	2004-03-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli K-12
Macromolecule	Dihydrolipoamide Succinyltransferase (protein)

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1SPX \| pdb_00001spx	Download File View File

Crystal Structure of Glucose Dehydrogenase of Caenorhabditis Elegans in the Apo-Form

Schormann, N., Zhou, J., McCombs, D., Bray, T., Symersky, J., Huang, W.-Y., Luan, C.-H., Gray, R., Luo, D., Arabashi, A., Bunzel, B., Nagy, L., Lu, S., Li, S., Lin, G., Zhang, Y., Qiu, S., Tsao, J., Luo, M., Carson, M., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2004-03-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Caenorhabditis elegans
Macromolecule	short-chain reductase family member (5L265) (protein)

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1T9F \| pdb_00001t9f	Download File View File

Structural genomics of Caenorhabditis elegans: Structure of a protein with unknown function

Symersky, J., Li, S., Bunzel, R., Schormann, N., Luo, D., Huang, W.Y., Qiu, S., Gray, R., Zhang, Y., Arabashi, A., Lu, S., Luan, C.H., Tsao, J., DeLucas, L., Luo, M., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2004-05-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Caenorhabditis elegans
Macromolecule	protein 1d10 (protein)
Unique Ligands	MLI

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1XHL \| pdb_00001xhl	Download File View File

Crystal Structure of putative Tropinone Reductase-II from Caenorhabditis Elegans with Cofactor and Substrate

Schormann, N., Karpova, E., Zhou, J., Zhang, Y., Symersky, J., Bunzel, R., Huang, W.-Y., Arabshahi, A., Qiu, S., Luan, C.-H., Gray, R., Carson, M., Tsao, J., Luo, M., Johnson, D., Lu, S., Lin, G., Luo, D., Cao, Z., Li, S., McKInstry, A., Shang, Q., Chen, Y.-J., Bray, T., Nagy, L., DeLucas, L., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2004-09-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Caenorhabditis elegans
Macromolecule	Short-chain dehydrogenase/reductase family member (5L265), putative Tropinone Reductase-II (protein)
Unique Ligands	NDP, TNE

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1XKQ \| pdb_00001xkq	Download File View File

Crystal Structure of Short-Chain Dehydrogenase/Reductase of unknown Function from Caenorhabditis Elegans with Cofactor

Schormann, N., Zhou, J., Karpova, E., Zhang, Y., Symersky, J., Bunzel, B., Huang, W.-Y., Arabshahi, A., Qiu, S., Luan, C.-H., Gray, R., Carson, M., Tsao, J., Luo, M., Johnson, D., Lu, S., Lin, G., Luo, D., Cao, Z., Li, S., McKinstry, A., Shang, Q., Chen, Y.-J., Bray, T., Nagy, L., DeLucas, L., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2004-10-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Caenorhabditis elegans
Macromolecule	short-chain reductase family member (5D234) (protein)
Unique Ligands	NDP

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1YIS \| pdb_00001yis	Download File View File

Structural genomics of Caenorhabditis elegans: adenylosuccinate lyase

Symersky, J., Schormann, N., Lu, S., Zhang, Y., Karpova, E., Qiu, S., Huang, W., Cao, Z., Zhou, J., Luo, M., Arabshahi, A., McKinstry, A., Luan, C.-H., Luo, D., Johnson, D., An, J., Tsao, J., Delucas, L., Shang, Q., Gray, R., Li, S., Bray, T., Chen, Y.-J., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2005-01-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Caenorhabditis elegans
Macromolecule	adenylosuccinate lyase (protein)
Unique Ligands	SO4

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1YO6 \| pdb_00001yo6	Download File View File

Crystal Structure of the putative Carbonyl Reductase Sniffer of Caenorhabditis elegans

Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Caenorhabditis elegans
Macromolecule	Putative Carbonyl Reductase Sniffer (protein)

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1YQ1 \| pdb_00001yq1	Download File View File

Structural Genomics Of Caenorhabditis Elegans: glutathione S-Transferase

Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2005-02-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Caenorhabditis elegans
Macromolecule	glutathione S-Transferase (protein)

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2B34 \| pdb_00002b34	Download File View File

Structure of MAR1 Ribonuclease from Caenorhabditis elegans

Schormann, N., Karpova, E., Li, S., Symersky, J., Zhang, Y., Lu, S., Zhou, Q., Lin, G., Cao, Z., Luo, M., Qiu, S., Luan, C.-H., Luo, D., Huang, W., Shang, Q., McKinstry, A., An, J., Tsao, J., Carson, M., Stinnett, M., Chen, Y., Johnson, D., Gary, R., Arabshahi, A., Bunzel, R., Bray, T., DeLucas, L., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2005-09-27
Method	X-RAY DIFFRACTION 2.141 Å
Organisms	Caenorhabditis elegans
Macromolecule	MAR1 Ribonuclease (protein)

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2GP4 \| pdb_00002gp4	Download File View File

Structure of [FeS]cluster-free Apo Form of 6-Phosphogluconate Dehydratase from Shewanella oneidensis

Schormann, N., Symersky, J., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2006-05-09
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Shewanella oneidensis MR-1
Macromolecule	6-phosphogluconate dehydratase (protein)

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2JLQ \| pdb_00002jlq	Download File View File

Dengue virus 4 NS3 helicase structure, apo enzyme.

Luo, D.H., Xu, T., Watson, R.P., Becker, D.S., Sampath, A., Jahnke, W., Yeong, S.S., Wang, C.H., Lim, S.P., Vasudevan, S.G., Lescar, J.

(2008) EMBO J 27: 3209

Released	2008-11-25
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Dengue virus 4 Thailand/0348/1991
Macromolecule	SERINE PROTEASE SUBUNIT NS3 (protein)
Unique Ligands	CL, GOL

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2JLR \| pdb_00002jlr	Download File View File

Dengue virus 4 NS3 helicase in complex with AMPPNP

Luo, D.H., Xu, T., Watson, R.P., Becker, D.S., Sampath, A., Jahnke, W., Yeong, S.S., Wang, C.H., Lim, S.P., Vasudevan, S.G., Lescar, J.

(2008) EMBO J 27: 3209

Released	2008-11-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Dengue virus 4 Thailand/0348/1991
Macromolecule	SERINE PROTEASE SUBUNIT NS3 (protein)
Unique Ligands	ANP, MN

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2JLS \| pdb_00002jls	Download File View File

Dengue virus 4 NS3 helicase in complex with ADP

Luo, D.H., Xu, T., Watson, R.P., Becker, D.S., Sampath, A., Jahnke, W., Yeong, S.S., Wang, C.H., Lim, S.P., Vasudevan, S.G., Lescar, J.

(2008) EMBO J 27: 3209

Released	2008-11-25
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Dengue virus 4 Thailand/0348/1991
Macromolecule	SERINE PROTEASE SUBUNIT NS3 (protein)
Unique Ligands	ADP, BME, CL, GOL, MN

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2JLU \| pdb_00002jlu	Download File View File

Dengue virus 4 NS3 helicase in complex with ssRNA

Luo, D.H., Xu, T., Watson, R.P., Becker, D.S., Sampath, A., Jahnke, W., Yeong, S.S., Wang, C.H., Lim, S.P., Vasudevan, S.G., Lescar, J.

(2008) EMBO J 27: 3209

Released	2008-11-25
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Dengue virus 4 Thailand/0348/1991
Macromolecule	SERINE PROTEASE SUBUNIT NS3 (protein) 5'-R(APGPAPCPUPAPAPCPAPAPCPU)-3' (nucleic acid)
Unique Ligands	GOL

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2JLY \| pdb_00002jly	Download File View File

Dengue virus 4 NS3 helicase in complex with ssRNA and ADP-Phosphate

Luo, D.H., Xu, T., Watson, R.P., Becker, D.S., Sampath, A., Jahnke, W., Yeong, S.S., Wang, C.H., Lim, S.P., Vasudevan, S.G., Lescar, J.

(2008) EMBO J 27: 3209

Released	2008-11-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Dengue virus 4 Thailand/0348/1991
Macromolecule	SERINE PROTEASE SUBUNIT NS3 (protein) 5'-R(APGPAPCPUPAPAPCPAPAPCPU)-3' (nucleic acid)
Unique Ligands	ADP, GOL, MN, PO4

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2JLZ \| pdb_00002jlz	Download File View File

Dengue virus 4 NS3 helicase in complex with ssRNA and ADP

Luo, D.H., Xu, T., Watson, R.P., Becker, D.S., Sampath, A., Jahnke, W., Yeong, S.S., Wang, C.H., Lim, S.P., Vasudevan, S.G., Lescar, J.

(2008) EMBO J 27: 3209

Released	2008-11-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Dengue virus 4 Thailand/0348/1991
Macromolecule	SERINE PROTEASE SUBUNIT NS3 (protein) 5'-R(APGPAPCPUPAPAPCPAPAPCPU)-3' (nucleic acid)
Unique Ligands	ADP, CL, GOL, MN

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2WHX \| pdb_00002whx	Download File View File

A second conformation of the NS3 protease-helicase from dengue virus

Luo, D., Lescar, J.

(2010) J Biological Chem 285: 18817

Released	2010-04-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	dengue virus type 4
Macromolecule	SERINE PROTEASE SUBUNIT NS2B (protein) SERINE PROTEASE/NTPASE/HELICASE NS3 (protein)
Unique Ligands	ADP, CL, MN

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2WZQ \| pdb_00002wzq	Download File View File

Insertion Mutant E173GP174 of the NS3 protease-helicase from dengue virus

Luo, D., Wei, N., Doan, D., Paradkar, P., Chong, Y., Davidson, A., Kotaka, M., Lescar, J., Vasudevan, S.

(2010) J Biological Chem 285: 18817

Released	2010-04-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Dengue virus
Macromolecule	NS3 PROTEASE-HELICASE (protein)
Unique Ligands	CL, GOL

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2YKG \| pdb_00002ykg	Download File View File

Structural insights into RNA recognition by RIG-I

Luo, D., Pyle, A.M.

(2011) Cell 147: 409

Released	2011-10-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	PROBABLE ATP-DEPENDENT RNA HELICASE DDX58 (protein) 5'-R(GPCPGPCPGPCPGPCPGPCP)-3' (nucleic acid)
Unique Ligands	SO4, ZN

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3OUO \| pdb_00003ouo	Download File View File

Structure of the Nucleoprotein from Rift Valley Fever Virus

Ferron, F., Danek, E.I., Li, Z., Luo, D., Wong, Y.H., Coutard, B., Lantez, V., Charrel, R., Canard, B., Walz, T., Lescar, J.

(2011) PLoS Pathog 7: e1002030-e1002030

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rift valley fever virus (STRAIN ZH-548 M12)
Macromolecule	Nucleoprotein (protein)
Unique Ligands	NO2

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1OOE | pdb_00001ooe

1PGV | pdb_00001pgv

1PZV | pdb_00001pzv

1Q34 | pdb_00001q34

1R9H | pdb_00001r9h

1SCZ | pdb_00001scz

1SPX | pdb_00001spx

1T9F | pdb_00001t9f

1XHL | pdb_00001xhl

1XKQ | pdb_00001xkq

1YIS | pdb_00001yis

1YO6 | pdb_00001yo6

1YQ1 | pdb_00001yq1

2B34 | pdb_00002b34

2GP4 | pdb_00002gp4

2JLQ | pdb_00002jlq

2JLR | pdb_00002jlr

2JLS | pdb_00002jls

2JLU | pdb_00002jlu

2JLY | pdb_00002jly

2JLZ | pdb_00002jlz

2WHX | pdb_00002whx

2WZQ | pdb_00002wzq

2YKG | pdb_00002ykg

3OUO | pdb_00003ouo