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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ma, X."

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Search Summary

This query matches 331 Structures.

Refinements

Structure Determination Methodology

experimental (331)

Scientific Name of Source Organism

	Homo sapiens (130)
	Arabidopsis thaliana (26)
	Mus musculus (23)
	Severe acute respiratory syndrome coronavirus 2 (22)
	Escherichia phage Qbeta (17)
	Escherichia coli (14)
	synthetic construct (11)
	Siraitia grosvenorii (10)
	Rauvolfia serpentina (9)
	Isatis tinctoria (7)

More...

Taxonomy

	Eukaryota (235)
	Bacteria (82)
	Riboviria (52)
	other sequences (12)
	Monodnaviria (4)
	Archaea (2)

Experimental Method

	X-RAY DIFFRACTION (213)
	ELECTRON MICROSCOPY (108)
	SOLUTION NMR (10)

Polymer Entity Type

	Protein (329)
	DNA (10)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (10)
	1.5 - 2.0 (67)
	2.0 - 2.5 (62)
	2.5 - 3.0 (74)
	3.0 - 3.5 (58)
	3.5 - 4.0 (35)
	4.0 - 4.5 (10)
	> 4.5 (5)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (12)
	2010 - 2014 (26)
	2015 - 2019 (57)
	2020 - 2024 (211)
	2025 - 2029 (21)

Enzyme Classification Name

	Hydrolases (46)
	Transferases (59)
	Oxidoreductases (24)
	Lyases (17)
	Isomerases (10)
	Translocases (5)

Membrane Protein Annotation

	PDBTM (37)
	mpstruc (28)
	MemProtMD (15)
	OPM (14)

Symmetry Type

	Asymmetric (184)
	Cyclic (127)
	Dihedral (16)
	Icosahedral (14)

SCOP Classification

	Alpha and beta proteins (a/b) (26)
	All beta proteins (20)
	Alpha and beta proteins (a+b) (21)
	Artifacts (19)
	All alpha proteins (3)
	Small proteins (2)

AllSelected

1 to 25 of 331 Structures

Page 1 of 14

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1C77 \| pdb_00001c77	Download File View File

STAPHYLOKINASE (SAK) DIMER

Rao, Z., Jiang, F., Liu, Y., Zhang, X., Chen, Y., Bartlam, M., Song, H., Ding, Y.

(2002) Eur J Biochem 269: 705-711

Released	2000-08-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus
Macromolecule	STAPHYLOKINASE (protein)

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1C78 \| pdb_00001c78	Download File View File

STAPHYLOKINASE (SAK) DIMER

Rao, Z., Jiang, F., Liu, Y., Zhang, X., Chen, Y., Bartlam, M., Song, H., Ding, Y.

(2002) Eur J Biochem 269: 705-711

Released	2000-08-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus
Macromolecule	STAPHYLOKINASE (protein)

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1C79 \| pdb_00001c79	Download File View File

STAPHYLOKINASE (SAK) DIMER

Rao, Z., Jiang, F., Liu, Y., Zhang, X., Chen, Y., Bartlam, M., Song, H., Ding, Y.

(2002) Eur J Biochem 269: 705-711

Released	2000-08-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus
Macromolecule	STAPHYLOKINASE (protein)

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1K5M \| pdb_00001k5m	Download File View File

Crystal Structure of a Human Rhinovirus Type 14:Human Immunodeficiency Virus Type 1 V3 Loop Chimeric Virus MN-III-2

Ding, J., Smith, A.D., Geisler, S.C., Ma, X., Arnold, G.F., Arnold, E.

(2002) Structure 10: 999-1011

Released	2002-07-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	HIV-1 M:B_MN rhinovirus B14
Macromolecule	CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120 (protein) COAT PROTEIN VP1 (P1D) (protein) COAT PROTEIN VP3 (P1C) (protein) COAT PROTEIN VP4 (P1A) (protein)
Unique Ligands	SPH

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2BGH \| pdb_00002bgh	Download File View File

Crystal structure of Vinorine Synthase

Ma, X., Koepke, J., Panjikar, S., Fritzsch, G., Stoeckigt, J.

(2005) J Biological Chem 280: 13576

Released	2005-01-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rauvolfia serpentina
Macromolecule	VINORINE SYNTHASE (protein)

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2FP8 \| pdb_00002fp8	Download File View File

Structure of Strictosidine Synthase, the Biosynthetic Entry to the Monoterpenoid Indole Alkaloid Family

Panjikar, S.

(2006) Plant Cell 18: 907-920

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rauvolfia serpentina
Macromolecule	Strictosidine synthase (protein)

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2FP9 \| pdb_00002fp9	Download File View File

Crystal structure of Native Strictosidine Synthase

Panjikar, S.

(2006) Plant Cell 18: 907-920

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.96 Å
Organisms	Rauvolfia serpentina
Macromolecule	Strictosidine synthase (protein)
Unique Ligands	TLA

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2FPB \| pdb_00002fpb	Download File View File

Structure of Strictosidine Synthase, the Biosynthetic Entry to the Monoterpenoid Indole Alkaloid Family

Panjikar, S.

(2006) Plant Cell 18: 907-920

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Rauvolfia serpentina
Macromolecule	Strictosidine Synthase (protein)
Unique Ligands	TSS

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2FPC \| pdb_00002fpc	Download File View File

Structure of Strictosidine Synthase, the Biosynthetic Entry to the Monoterpenoid Indole Alkaloid Family

Panjikar, S.

(2006) Plant Cell 18: 907-920

Released	2006-05-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Rauvolfia serpentina
Macromolecule	Strictosidine synthase (protein)
Unique Ligands	SCG

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2I1Q \| pdb_00002i1q	Download File View File

RadA Recombinase in complex with Calcium

Qian, X., He, Y., Ma, X., Fodje, M.N., Grochulski, P., Luo, Y.

(2006) J Biological Chem 281: 39380-39387

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ANP, CA, MG, NA

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2M7T \| pdb_00002m7t	Download File View File

Solution NMR Structure of Engineered Cystine Knot Protein 2.5D

Cochran, F.V., Das, R.

(2014) Proteins 82 Suppl 2: 26-42

Released	2014-05-07
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Cystine Knot Protein 2.5D (protein)

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2O09 \| pdb_00002o09	Download File View File

Crystal structure of the H-NOX domain from Nostoc sp. PCC 7120

Ma, X., van den Akker, F.

(2007) EMBO J 26: 578-588

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Nostoc sp. PCC 7120 = FACHB-418
Macromolecule	Alr2278 protein (protein)
Unique Ligands	HEM

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2O0C \| pdb_00002o0c	Download File View File

Crystal structure of the H-NOX domain from Nostoc sp. PCC 7120 complexed to NO

Ma, X., van den Akker, F.

(2007) EMBO J 26: 578-588

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Nostoc sp. PCC 7120 = FACHB-418
Macromolecule	Alr2278 protein (protein)
Unique Ligands	HEM, NO

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2O0G \| pdb_00002o0g	Download File View File

Crystal structure of the H-NOX domain from Nostoc sp. PCC 7120 complexed to CO

Ma, X., van den Akker, F.

(2007) EMBO J 26: 578-588

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Nostoc sp. PCC 7120 = FACHB-418
Macromolecule	Alr2278 protein (protein)
Unique Ligands	CMO, HEM

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2P04 \| pdb_00002p04	Download File View File

2.1 Ang structure of the dimerized PAS domain of signal transduction histidine kinase from Nostoc punctiforme PCC 73102 with homology to the H-NOXA/H-NOBA domain of the soluble guanylyl cyclase

van den Akker, F., Ma, X.

(2008) J Biological Chem 283: 1167-1178

Released	2007-11-13
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Nostoc punctiforme PCC 73102
Macromolecule	signal transduction histidine kinase (protein)

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2P08 \| pdb_00002p08	Download File View File

Structure of the N-terminally truncated PAS domain of signal transduction histidine kinase from Nostoc punctiforme PCC 73102 with homology to the H-NOXA/H-NOBA domain of the soluble guanylyl cyclase

van den Akker, F., Ma, X.

(2008) J Biological Chem 283: 1167-1178

Released	2007-11-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Nostoc punctiforme PCC 73102
Macromolecule	signal transduction histidine kinase (protein)
Unique Ligands	SO4

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2V91 \| pdb_00002v91	Download File View File

STRUCTURE OF STRICTOSIDINE SYNTHASE IN COMPLEX WITH STRICTOSIDINE

Loris, E.A., Panjikar, S., Ruppert, M., Barleben, L., Unger, M., Stoeckigt, J.

(2007) Chem Biol 14: 979

Released	2008-09-16
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Rauvolfia serpentina
Macromolecule	STRICTOSIDINE SYNTHASE (protein)
Unique Ligands	S55

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3HLS \| pdb_00003hls	Download File View File

Crystal structure of the signaling helix coiled-coil doimain of the BETA-1 subunit of the soluble guanylyl cyclase

Ma, X., van den Akker, F.

(2010) BMC Struct Biol 10: 2-2

Released	2010-01-19
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Rattus norvegicus
Macromolecule	Guanylate cyclase soluble subunit beta-1 (protein)

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3L6J \| pdb_00003l6j	Download File View File

Structure of cinaciguat (bay 58-2667) bound to nostoc H-NOX domain

Martin, F., van den Akker, F.

(2010) J Biological Chem 285: 22651-22657

Released	2010-05-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Nostoc sp. PCC 7120 = FACHB-418
Macromolecule	Alr2278 protein (protein)
Unique Ligands	Z90

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3N4N \| pdb_00003n4n	Download File View File

Insights into the stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido[2,3-d]pyrimidin-2-one

Takenaka, A., Juan, E.C.M., Shimizu, S.

(2010) Nucleic Acids Res

Released	2010-08-11
Method	X-RAY DIFFRACTION 1.92 Å
Macromolecule	5'-D(CPGPCPGPAPA)-3' (nucleic acid) 5'-D(PTPTP(B7C)PGPCPG)-3' (nucleic acid)

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3N4O \| pdb_00003n4o	Download File View File

Insights into the stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido[2,3-d]pyrimidin-2-one

Takenaka, A., Juan, E.C.M., Shimizu, S.

(2010) Nucleic Acids Res

Released	2010-08-11
Method	X-RAY DIFFRACTION 2.9 Å
Macromolecule	5'-D(CPGPCPGPAPAPTP(B7C)PCPGPCPG)-3' (nucleic acid)
Unique Ligands	HT

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3P9W \| pdb_00003p9w	Download File View File

Crystal structure of an engineered human autonomous VH Domain in complex with VEGF

Ma, X., Wiesmann, C.

(2013) J Mol Biology 425: 2247-2259

Released	2012-04-18
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Homo sapiens
Macromolecule	Vascular endothelial growth factor A (protein) human VEGF (protein)

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3PF2 \| pdb_00003pf2	Download File View File

The Crystal Structure of the Major Pilin GBS80 of Streptococcus agalactiae 35kDa C-terminal fragment

Vengadesan, K., Narayana, S.V.L.

(2011) J Mol Biology 407: 731-743

Released	2011-03-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptococcus agalactiae serogroup V
Macromolecule	Cell wall surface anchor family protein (protein)
Unique Ligands	CA

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3PG2 \| pdb_00003pg2	Download File View File

The Crystal structure of the major pilin GBS80 of Streptococcus agalactiae 35 kDa C-terminal fragment

Vengadesan, K., Narayana, S.V.L.

(2011) J Mol Biology 407: 731-743

Released	2011-03-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptococcus agalactiae serogroup V
Macromolecule	Cell wall surface anchor family protein (protein)
Unique Ligands	CA