RCSB PDB: Search

2R9A \| pdb_00002r9a	Download File View File

Crystal structure of human XLF

Andres, S.N., Junop, M.S.

Mol Cell 28: 1093-1101

Released	2008-01-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Non-homologous end-joining factor 1 (protein)

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4BGN \| pdb_00004bgn	Download File View File

cryo-EM structure of the NavCt voltage-gated sodium channel

Tsai, C.J., Tani, K., Irie, K., Hiroaki, Y., Shimomura, T., Mcmillan, D.G., Cook, G.M., Schertler, G., Fujiyoshi, Y., Li, X.D.

(2013) J Mol Biology 425: 4074

Released	2013-07-10
Method	ELECTRON CRYSTALLOGRAPHY 9 Å
Organisms	Caldalkalibacillus thermarum
Macromolecule	VOLTAGE-GATED SODIUM CHANNEL (protein)

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6FUF \| pdb_00006fuf	Download File View File

Crystal structure of the rhodopsin-mini-Go complex

Tsai, C.-J., Weinert, T., Muehle, J., Pamula, F., Nehme, R., Flock, T., Nogly, P., Edwards, P.C., Carpenter, B., Gruhl, T., Ma, P., Deupi, X., Standfuss, J., Tate, C.G., Schertler, G.F.X.

(2018) Sci Adv 4: eaat7052-eaat7052

Released	2018-10-03
Method	X-RAY DIFFRACTION 3.117 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	Guanine nucleotide-binding protein G(o) subunit alpha (protein) Rhodopsin (protein)
Unique Ligands	NAG, RET

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6QNK \| pdb_00006qnk	Download File View File

Antibody FAB fragment targeting Gi protein heterotrimer

Tsai, C.-J., Muehle, J., Pamula, F., Dawson, R.J.P., Maeda, S., Deupi, X., Schertler, G.F.X.

(2019) Elife 8:

Released	2019-07-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	FAB heavy chain (protein) FAB light chain (protein)
Unique Ligands	EDO, MLT, PG4, PGE

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6QNO \| pdb_00006qno	Download File View File

Rhodopsin-Gi protein complex

Tsai, C.-J., Marino, J., Adaixo, R.J., Pamula, F., Muehle, J., Maeda, S., Flock, T., Taylor, N.M.I., Mohammed, I., Matile, H., Dawson, R.J.P., Deupi, X., Stahlberg, H., Schertler, G.F.X.

(2019) Elife 8:

Released	2019-07-10
Method	ELECTRON MICROSCOPY 4.38 Å
Organisms	Bos taurus Homo sapiens Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	RET
Unique branched monosaccharides	NAG

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7AC2 \| pdb_00007ac2	Download File View File

Structure of Hen Egg White Lysozyme collected by rotation serial crystallography on a COC membrane at a synchrotron source

Martiel, I., Padeste, C., Karpik, A., Huang, C.Y., Vera, L., Wang, M., Marsh, M.

(2021) Acta Crystallogr D Struct Biol 77: 1153-1167

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.507 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme (protein)
Unique Ligands	CL, NA

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7AC3 \| pdb_00007ac3	Download File View File

Structure of thaumatin collected by rotation serial crystallography on a COC membrane at a synchrotron source

Martiel, I., Padeste, C., Karpik, A., Huang, C.Y., Vera, L., Wang, M., Marsh, M.

(2021) Acta Crystallogr D Struct Biol 77: 1153-1167

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	NA, PGO, TLA

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7AC4 \| pdb_00007ac4	Download File View File

Structure of insulin collected by rotation serial crystallography on a COC membrane at a synchrotron source

Martiel, I., Padeste, C., Karpik, A., Huang, C.Y., Vera, L., Wang, M., Marsh, M.

(2021) Acta Crystallogr D Struct Biol 77: 1153-1167

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Sus scrofa
Macromolecule	Insulin (protein)
Unique Ligands	NA, PGR

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7AC5 \| pdb_00007ac5	Download File View File

Structure of Tubulin Darpin complex 1 collected by rotation serial crystallography on a COC membrane at a synchrotron source

Martiel, I., Olieric, N., Wranik, M., Padeste, C., Karpik, A., Huang, C.Y., Wang, M., Marsh, M.

(2021) Acta Crystallogr D Struct Biol 77: 1153-1167

Released	2021-09-01
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Bos taurus
Macromolecule	Designed Ankyrin Repeat Protein (DARPIN) D1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	GDP, GTP, MG, PG0

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7AC6 \| pdb_00007ac6	Download File View File

Structure of sponge-phase grown PepTst2 collected by rotation serial crystallography on a COC membrane at a synchrotron source

Martiel, I., Padeste, C., Karpik, A., Huang, C.Y., Wang, M., Marsh, M.

(2021) Acta Crystallogr D Struct Biol 77: 1153-1167

Released	2021-09-01
Method	X-RAY DIFFRACTION 3 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	78M, PG0, PGE, PO4

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7AI8 \| pdb_00007ai8	Download File View File

Structure of Ribonucleotide reductase R2 from Escherichia coli collected by still serial crystallography on a COC membrane at a synchrotron source

Aurelius, O., John, J., Martiel, I., Padeste, C., Karpik, A., Huang, C.Y., Hogbom, M., Wang, M., Marsh, M.

(2021) Acta Crystallogr D Struct Biol 77: 1153-1167

Released	2021-09-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Ribonucleoside-diphosphate reductase 1 subunit beta (protein)
Unique Ligands	FE

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7AI9 \| pdb_00007ai9	Download File View File

Structure of Ribonucleotide reductase R2 from Escherichia coli collected by rotation serial crystallography on a COC membrane at a synchrotron source

Aurelius, O., John, J., Martiel, I., Padeste, C., Karpik, A., Huang, C.Y., Hogbom, M., Wang, M., Marsh, M.

(2021) Acta Crystallogr D Struct Biol 77: 1153-1167

Released	2021-09-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12
Macromolecule	Ribonucleoside-diphosphate reductase 1 subunit beta (protein)
Unique Ligands	FE

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7O7F \| pdb_00007o7f	Download File View File

Structural basis of the activation of the CC chemokine receptor 5 by a chemokine agonist

Isaikina, P., Tsai, C.-J., Dietz, N.B., Pamula, F., Goldie, K.N., Schertler, G.F.X., Maier, T., Stahlberg, H., Deupi, X., Grzesiek, S.

(2021) Sci Adv 7:

Released	2021-06-30
Method	ELECTRON MICROSCOPY 3.15 Å
Organisms	Bos taurus Homo sapiens Mus musculus
Macromolecule	Unique protein chains: 7

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7ZBC \| pdb_00007zbc	Download File View File

Dark state crystal structure of bovine rhodopsin in Lipidic Cubic Phase (SACLA)

Gruhl, T., Weinert, T., Rodrigues, M.J., Milne, C., Ortolani, G., Nass, K., Nango, E., Sen, S., Johnson, P., Cirelli, C., Furrer, A., Mous, S., Skopintsev, P., James, D., Dworkowski, F., Baath, P., Kekilli, D., Oserov, D., Tanaka, R., Glover, H., Bacellar, C., Bruenle, S., Casadei, C., Diethelm, A., Gashi, D., Gotthard, G., Guixa-Gonzalez, R., Joti, Y., Kabanova, V., Knopp, G., Lesca, E., Ma, P., Martiel, I., Muehle, J., Owada, S., Pamula, F., Sarabi, S., Tejero, O., Tsai, C.J., Varma, N., Wach, A., Boutet, S., Tono, K., Nogly, P., Deupi, X., Iwata, S., Neutze, R., Standfuss, J., Schertler, G.F.X., Panneels, V.

(2023) Nature 615: 939-944

Released	2023-03-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	Rhodopsin (protein)
Unique Ligands	ACE, DAO, NAG, OLC, PLM, RET
Unique branched monosaccharides	NAG

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7ZBE \| pdb_00007zbe	Download File View File

Dark state crystal structure of bovine rhodopsin in Lipidic Cubic Phase (SwissFEL)

Gruhl, T., Weinert, T., Rodrigues, M.J., Milne, C., Ortolani, G., Nass, K., Nango, E., Sen, S., Johnson, P., Cirelli, C., Furrer, A., Mous, S., Skopintsev, P., James, D., Dworkowski, F., Baath, P., Kekilli, D., Oserov, D., Tanaka, R., Glover, H., Bacellar, C., Bruenle, S., Casadei, C., Diethelm, A., Gashi, D., Gotthard, G., Guixa-Gonzalez, R., Joti, Y., Kabanova, V., Knopp, G., Lesca, E., Ma, P., Martiel, I., Muehle, J., Owada, S., Pamula, F., Sarabi, D., Tejero, O., Tsai, C.J., Varma, N., Wach, A., Boutet, S., Tono, K., Nogly, P., Deupi, X., Iwata, S., Neutze, R., Standfuss, J., Schertler, G.F.X., Panneels, V.

(2023) Nature 615: 939-944

Released	2023-03-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	Rhodopsin (protein)
Unique Ligands	ACE, DAO, NAG, OLC, PLM, RET
Unique branched monosaccharides	NAG

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8A6C \| pdb_00008a6c	Download File View File

1 picosecond light activated crystal structure of bovine rhodopsin in Lipidic Cubic Phase

Gruhl, T., Weinert, T., Rodrigues, M.J., Milne, C.J., Ortolani, G., Nass, K., Nango, E., Sen, S., Johnson, P.J.M., Cirelli, C., Furrer, A., Mous, S., Skopintsev, P., James, D., Dworkowski, F., Baath, P., Kekilli, D., Oserov, D., Tanaka, R., Glover, H., Bacellar, C., Bruenle, S., Casadei, C.M., Diethelm, A.D., Gashi, D., Gotthard, G., Guixa-Gonzalez, R., Joti, Y., Kabanova, V., Knopp, G., Lesca, E., Ma, P., Martiel, I., Muehle, J., Owada, S., Pamula, F., Sarabi, D., Tejero, O., Tsai, C.J., Varma, N., Wach, A., Boutet, S., Tono, K., Nogly, P., Deupi, X., Iwata, S., Neutze, R., Standfuss, J., Schertler, G.F.X., Panneels, V.

(2023) Nature 615: 939-944

Released	2023-03-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	Rhodopsin (protein)
Unique Ligands	ACE, DAO, NAG, OLC, PLM, RET
Unique branched monosaccharides	NAG

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8A6D \| pdb_00008a6d	Download File View File

10 picosecond light activated crystal structure of bovine rhodopsin in Lipidic Cubic Phase

Gruhl, T., Weinert, T., Rodrigues, M.J., Milne, C.J., Ortolani, G., Nass, K., Nango, E., Sen, S., Johnson, P.J.M., Cirelli, C., Furrer, A., Mous, S., Skopintsev, P., James, D., Dworkowski, F., Baath, P., Kekilli, D., Oserov, D., Tanaka, R., Glover, H., Bacellar, C., Bruenle, S., Casadei, C.M., Diethelm, A.D., Gashi, D., Gotthard, G., Guixa-Gonzalez, R., Joti, Y., Kabanova, V., Knopp, G., Lesca, E., Ma, P., Martiel, I., Muehle, J., Owada, S., Pamula, F., Sarabi, D., Tejero, O., Tsai, C.J., Varma, N., Wach, A., Boutet, S., Tono, K., Nogly, P., Deupi, X., Iwata, S., Neutze, R., Standfuss, J., Schertler, G.F.X., Panneels, V.

(2023) Nature 615: 939-944

Released	2023-03-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	Rhodopsin (protein)
Unique Ligands	ACE, DAO, NAG, OLC, PLM, RET
Unique branched monosaccharides	NAG

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8A6E \| pdb_00008a6e	Download File View File

100 picosecond light activated crystal structure of bovine rhodopsin in Lipidic Cubic Phase (SACLA)

Gruhl, T., Weinert, T., Rodrigues, M.J., Milne, C.J., Ortolani, G., Nass, K., Nango, E., Sen, S., Johnson, P.J.M., Cirelli, C., Furrer, A., Mous, S., Skopintsev, P., James, D., Dworkowski, F., Baath, P., Kekilli, D., Oserov, D., Tanaka, R., Glover, H., Bacellar, C., Bruenle, S., Casadei, C.M., Diethelm, A.D., Gashi, D., Gotthard, G., Guixa-Gonzalez, R., Joti, Y., Kabanova, V., Knopp, G., Lesca, E., Ma, P., Martiel, I., Muehle, J., Owada, S., Pamula, F., Sarabi, D., Tejero, O., Tsai, C.J., Varma, N., Wach, A., Boutet, S., Tono, K., Nogly, P., Deupi, X., Iwata, S., Neutze, R., Standfuss, J., Schertler, G.F.X., Panneels, V.

(2023) Nature 615: 939-944

Released	2023-03-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	Rhodopsin (protein)
Unique Ligands	DAO, NAG, OLC, PLM, RET
Unique branched monosaccharides	NAG

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9EPP \| pdb_00009epp	Download File View File

Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer

Tejero, O., Pamula, F., Koyanagi, M., Nagata, T., Afanasyev, P., Das, I., Deupi, X., Sheves, M., Terakita, A., Schertler, G.F.X., Rodrigues, M.J., Tsai, C.-J.

(2024) Nat Commun 15: 8928-8928

Released	2024-10-23
Method	ELECTRON MICROSCOPY 4.06 Å
Organisms	Hasarius adansoni Homo sapiens
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) Kumopsin1 (protein)
Unique Ligands	A1H6M

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9EPQ \| pdb_00009epq	Download File View File

Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer

Tejero, O., Pamula, F., Koyanagi, M., Nagata, T., Afanasyev, P., Das, I., Deupi, X., Sheves, M., Terakita, A., Schertler, G.F.X., Rodrigues, M.J., Tsai, C.-J.

(2024) Nat Commun 15: 8928-8928

Released	2024-10-23
Method	ELECTRON MICROSCOPY 4.15 Å
Organisms	Hasarius adansoni Homo sapiens
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) Kumopsin1 (protein)
Unique Ligands	A1H6M

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9EPR \| pdb_00009epr	Download File View File

Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Gi heterotrimer

Tejero, O., Pamula, F., Koyanagi, M., Nagata, T., Afanasyev, P., Das, I., Deupi, X., Sheves, M., Terakita, A., Schertler, G.F.X., Rodrigues, M.J., Tsai, C.-J.

(2024) Nat Commun 15: 8928-8928

Released	2024-10-30
Method	ELECTRON MICROSCOPY 4.9 Å
Organisms	Bos taurus Hasarius adansoni Homo sapiens
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(T) subunit gamma-T1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) Kumopsin1 (protein)
Unique Ligands	RET

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2R9A | pdb_00002r9a

4BGN | pdb_00004bgn

6FUF | pdb_00006fuf

6QNK | pdb_00006qnk

6QNO | pdb_00006qno

7AC2 | pdb_00007ac2

7AC3 | pdb_00007ac3

7AC4 | pdb_00007ac4

7AC5 | pdb_00007ac5

7AC6 | pdb_00007ac6

7AI8 | pdb_00007ai8

7AI9 | pdb_00007ai9

7O7F | pdb_00007o7f

7ZBC | pdb_00007zbc

7ZBE | pdb_00007zbe

8A6C | pdb_00008a6c

8A6D | pdb_00008a6d

8A6E | pdb_00008a6e

9EPP | pdb_00009epp

9EPQ | pdb_00009epq

9EPR | pdb_00009epr