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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "McAndrew, R.P."

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Search Summary

This query matches 52 Structures.

Refinements

Structure Determination Methodology

experimental (52)

Scientific Name of Source Organism

	Sphingobium sp. SYK-6 (12)
	Sulfolobus acidocaldarius DSM 639 (7)
	Abies grandis (6)
	Methanococcus maripaludis (6)
	Homo sapiens (3)
	Novosphingobium aromaticivorans DSM 12444 (3)
	Rasamsonia emersonii (2)
	Thermobacillus composti KWC4 (2)
	Thermotoga maritima (2)
	compost metagenome (2)

More...

Taxonomy

	Bacteria (25)
	Archaea (13)
	Eukaryota (12)
	unclassified sequences (2)

Experimental Method

X-RAY DIFFRACTION (52)

Polymer Entity Type

Protein (52)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (19)
	2.0 - 2.5 (14)
	2.5 - 3.0 (7)
	3.0 - 3.5 (1)
	3.5 - 4.0 (3)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (27)
	2015 - 2019 (23)
	2020 - 2024 (1)

Enzyme Classification Name

	Oxidoreductases (13)
	Lyases (6)
	Hydrolases (2)

Symmetry Type

	Asymmetric (23)
	Cyclic (20)
	Dihedral (11)

SCOP Classification

	Alpha and beta proteins (a/b) (11)
	All beta proteins (2)
	Artifacts (1)

AllSelected

1 to 25 of 52 Structures

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Explore in 3D

3B96 \| pdb_00003b96	Download File View File

Structural Basis for Substrate Fatty-Acyl Chain Specificity: Crystal Structure of Human Very-Long-Chain Acyl-CoA Dehydrogenase

McAndrew, R.P., Wang, Y., Mohsen, A.W., He, M., Vockley, J., Kim, J.J.

(2008) J Biological Chem 283: 9435-9443

Released	2008-02-12
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Homo sapiens
Macromolecule	Very long-chain specific acyl-CoA dehydrogenase (protein)
Unique Ligands	FAD, MYA

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3MMU \| pdb_00003mmu	Download File View File

Crystal structure of endoglucanase Cel5A from the hyperthermophilic Thermotoga maritima

Pereira, J.H., Chen, Z., McAndrew, R.P., Sapra, R., Chhabra, S.R., Sale, K.L., Simmons, B.A., Adams, P.D.

(2010) J Struct Biol 172: 372-379

Released	2010-07-28
Method	X-RAY DIFFRACTION 2.201 Å
Organisms	Thermotoga maritima
Macromolecule	Endoglucanase (protein)
Unique Ligands	CD, NI

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3MMW \| pdb_00003mmw	Download File View File

Crystal structure of endoglucanase Cel5A from the hyperthermophilic Thermotoga maritima

Pereira, J.H., Chen, Z., McAndrew, R.P., Sapra, R., Chhabra, S.R., Sale, K.L.

(2010) J Struct Biol 172: 372-379

Released	2010-07-28
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Thermotoga maritima
Macromolecule	Endoglucanase (protein)
Unique Ligands	CD

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3PFX \| pdb_00003pfx	Download File View File

Crystal structure of Cel7A from Talaromyces emersonii in complex with cellobiose

Qin, L., Pereira, J.H., McAndrew, R.P., Simmons, B.A., Sapra, R., Adams, P.D., Sale, K.L.

To be published

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.2616 Å
Organisms	Rasamsonia emersonii
Macromolecule	Cellobiohydrolase 1 catalytic domain (protein)
Unique Ligands	SO4
Unique branched monosaccharides	BGC, BMA, MAN, NAG

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3PFZ \| pdb_00003pfz	Download File View File

Crystal structure of Cel7A from Talaromyces emersonii in complex with cellotetraose

Qin, L., Pereira, J.H., McAndrew, R.P., Simmons, B.A., Sapra, R., Adams, P.D., Sale, K.L.

To be published

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.0993 Å
Organisms	Rasamsonia emersonii
Macromolecule	Cellobiohydrolase 1 catalytic domain (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	BGC, BMA, MAN, NAG

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3RUQ \| pdb_00003ruq	Download File View File

Crystal structure of Cpn-WT in complex with ADP from Methanococcus maripaludis

Pereira, J.H., Ralston, C.Y., Douglas, N.R., Kumar, R., McAndrew, R.P., Knee, K.M., Frydman, J., Adams, P.D.

(2012) EMBO J 31: 731-740

Released	2012-01-04
Method	X-RAY DIFFRACTION 2.798 Å
Organisms	Methanococcus maripaludis
Macromolecule	Chaperonin (protein)
Unique Ligands	ADP, MG

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3RUS \| pdb_00003rus	Download File View File

Crystal structure of Cpn-rls in complex with ADP from Methanococcus maripaludis

Pereira, J.H., Ralston, C.Y., Douglas, N.R., Kumar, R., McAndrew, R.P., Knee, K.M., King, J.A., Frydman, J., Adams, P.D.

(2012) EMBO J 31: 731-740

Released	2012-01-04
Method	X-RAY DIFFRACTION 2.338 Å
Organisms	Methanococcus maripaludis
Macromolecule	Chaperonin (protein)
Unique Ligands	ADP, MG, SO4

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3RUV \| pdb_00003ruv	Download File View File

Crystal structure of Cpn-rls in complex with ATP analogue from Methanococcus maripaludis

Pereira, J.H., Ralston, C.Y., Douglas, N.R., Kumar, R., McAndrew, R.P., Knee, K.M., King, J.A., Frydman, J., Adams, P.D.

(2012) EMBO J 31: 731-740

Released	2012-01-04
Method	X-RAY DIFFRACTION 2.242 Å
Organisms	Methanococcus maripaludis
Macromolecule	Chaperonin (protein)
Unique Ligands	ANP, MG, SO4

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3RUW \| pdb_00003ruw	Download File View File

Crystal structure of Cpn-rls in complex with ADP-AlFx from Methanococcus maripaludis

Pereira, J.H., Ralston, C.Y., Douglas, N.R., Kumar, R., McAndrew, R.P., Knee, K.M., King, J.A., Frydman, J., Adams, P.D.

(2012) EMBO J 31: 731-740

Released	2012-01-04
Method	X-RAY DIFFRACTION 2.702 Å
Organisms	Methanococcus maripaludis
Macromolecule	Chaperonin (protein)
Unique Ligands	ADP, AF3, MG, SO4

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3SAE \| pdb_00003sae	Download File View File

Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production

McAndrew, R.P., Peralta-Yahya, P.P., DeGiovanni, A., Pereira, J.H., Hadi, M.Z., Keasling, J.D., Adams, P.D.

(2011) Structure 19: 1876-1884

Released	2011-12-14
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Abies grandis
Macromolecule	Alpha-bisabolene synthase (protein)
Unique Ligands	CL, FPS, GOL, MG

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3SDQ \| pdb_00003sdq	Download File View File

Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production

McAndrew, R.P., Peralta-Yahya, P.P., DeGiovanni, A., Pereira, J.H., Hadi, M.Z., Keasling, J.D., Adams, P.D.

(2011) Structure 19: 1876-1884

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Abies grandis
Macromolecule	Alpha-bisabolene synthase (protein)
Unique Ligands	CL, GOL

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3SDR \| pdb_00003sdr	Download File View File

Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production

McAndrew, R.P., Peralta-Yahya, P.P., DeGiovanni, A., Pereira, J.H., Hadi, M.Z., Keasling, J.D., Adams, P.D.

(2011) Structure 19: 1876-1884

Released	2011-12-14
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Abies grandis
Macromolecule	Alpha-bisabolene synthase (protein)
Unique Ligands	210, CL, MG

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3SDT \| pdb_00003sdt	Download File View File

Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production

McAndrew, R.P., Peralta-Yahya, P.P., DeGiovanni, A., Pereira, J.H., Hadi, M.Z., Keasling, J.D., Adams, P.D.

(2011) Structure 19: 1876-1884

Released	2011-12-14
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Abies grandis
Macromolecule	Alpha-bisabolene synthase (protein)
Unique Ligands	AHD, CL, GOL, MG

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3SDU \| pdb_00003sdu	Download File View File

Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production

McAndrew, R.P., Peralta-Yahya, P.P., DeGiovanni, A., Pereira, J.H., Hadi, M.Z., Keasling, J.D., Adams, P.D.

(2011) Structure 19: 1876-1884

Released	2011-12-14
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Abies grandis
Macromolecule	Alpha-bisabolene synthase (protein)
Unique Ligands	CL, GST, MG

Explore in 3D

3SDV \| pdb_00003sdv	Download File View File

Structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production

McAndrew, R.P., Peralta-Yahya, P.P., DeGiovanni, A., Pereira, J.H., Hadi, M.Z., Keasling, J.D., Adams, P.D.

(2011) Structure 19: 1876-1884

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Abies grandis
Macromolecule	Alpha-bisabolene synthase (protein)
Unique Ligands	911, CL, MG

Explore in 3D

3U48 \| pdb_00003u48	Download File View File

From soil to structure: a novel dimeric family 3-beta-glucosidase isolated from compost using metagenomic analysis

McAndrew, R.P., Park, J.I., Reindl, W., Friedland, G.D., D'haeseleer, P., Northen, T., Sale, K.L., Simmons, B.A., Adams, P.D.

(2013) J Biological Chem 288: 14985-14992

Released	2013-04-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	compost metagenome
Macromolecule	JMB19063 (protein)
Unique Ligands	BGC, CA

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3U4A \| pdb_00003u4a	Download File View File

From soil to structure: a novel dimeric family 3-beta-glucosidase isolated from compost using metagenomic analysis

McAndrew, R.P., Park, J.I., Reindl, W., Friedland, G.D., D'haeseleer, P., Northen, T., Sale, K.L., Simmons, B.A., Adams, P.D.

(2013) J Biological Chem 288: 14985-14992

Released	2013-04-10
Method	X-RAY DIFFRACTION 2.196 Å
Organisms	compost metagenome
Macromolecule	JMB19063 (protein)
Unique Ligands	BGC, CA
Unique branched monosaccharides	BGC

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4NBT \| pdb_00004nbt	Download File View File

Crystal structure of FabG from Acholeplasma laidlawii

Pereira, J.H., Mcandrew, R.P., Javidpour, P., Beller, H.R., Adams, P.D.

(2014) Appl Environ Microbiol 80: 497-505

Released	2013-12-04
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Acholeplasma laidlawii PG-8A
Macromolecule	3-oxoacyl-[acyl-carrier-protein] reductase (protein)
Unique Ligands	NAD

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4NBU \| pdb_00004nbu	Download File View File

Crystal structure of FabG from Bacillus sp

Pereira, J.H., Mcandrew, R.P., Javidpour, P., Beller, H.R., Adams, P.D.

(2014) Appl Environ Microbiol 80: 497-505

Released	2013-12-04
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Bacillus sp. SG-1
Macromolecule	3-oxoacyl-(Acyl-carrier-protein) reductase (protein)
Unique Ligands	CAA, NAI

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4NBV \| pdb_00004nbv	Download File View File

Crystal structure of FabG from Cupriavidus taiwanensis

Pereira, J.H., Mcandrew, R.P., Javidpour, P., Beller, H.R., Adams, P.D.

(2014) Appl Environ Microbiol 80: 497-505

Released	2013-12-04
Method	X-RAY DIFFRACTION 1.645 Å
Organisms	Cupriavidus taiwanensis
Macromolecule	3-oxoacyl-[acyl-carrier-protein] reductase putative short-chain dehydrogenases/reductases (SDR) family protein (protein)
Unique Ligands	B3P

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4NBW \| pdb_00004nbw	Download File View File

Crystal structure of FabG from Plesiocystis pacifica

Pereira, J.H., Mcandrew, R.P., Javidpour, P., Beller, H.R., Adams, P.D.

(2014) Appl Environ Microbiol 80: 497-505

Released	2013-12-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Plesiocystis pacifica SIR-1
Macromolecule	Short-chain dehydrogenase/reductase SDR (protein)
Unique Ligands	NAD

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4OPC \| pdb_00004opc	Download File View File

Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase.

McAndrew, R.P., Kung, Y., Xie, X., Liu, C., Pereira, J.H., Keasling, J.D., Adams, P.D.

(2014) Structure 22: 1028-1036

Released	2014-07-09
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	Conserved Archaeal protein (protein)
Unique Ligands	FDA, PGT

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4OPD \| pdb_00004opd	Download File View File

Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase.

McAndrew, R.P., Kung, Y., Xie, X., Liu, C., Pereira, J.H., Keasling, J.D., Adams, P.D.

(2014) Structure 22: 1028-1036

Released	2014-07-09
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	Conserved Archaeal protein (protein)
Unique Ligands	FDA, GRG

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4OPG \| pdb_00004opg	Download File View File

Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase.

McAndrew, R.P., Kung, Y., Xie, X., Liu, C., Pereira, J.H., Keasling, J.D., Adams, P.D.

(2014) Structure 22: 1028-1036

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	Conserved Archaeal protein (protein)
Unique Ligands	FDA, GRG, SO4

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4OPI \| pdb_00004opi	Download File View File

Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase.

McAndrew, R.P., Kung, Y., Xie, X., Liu, C., Pereira, J.H., Keasling, J.D., Adams, P.D.

(2014) Structure 22: 1028-1036

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	Conserved Archaeal protein (protein)
Unique Ligands	FDA, GRG

1 to 25 of 52 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3B96 | pdb_00003b96

3MMU | pdb_00003mmu

3MMW | pdb_00003mmw

3PFX | pdb_00003pfx

3PFZ | pdb_00003pfz

3RUQ | pdb_00003ruq

3RUS | pdb_00003rus

3RUV | pdb_00003ruv

3RUW | pdb_00003ruw

3SAE | pdb_00003sae

3SDQ | pdb_00003sdq

3SDR | pdb_00003sdr

3SDT | pdb_00003sdt

3SDU | pdb_00003sdu

3SDV | pdb_00003sdv

3U48 | pdb_00003u48

3U4A | pdb_00003u4a

4NBT | pdb_00004nbt

4NBU | pdb_00004nbu

4NBV | pdb_00004nbv

4NBW | pdb_00004nbw

4OPC | pdb_00004opc

4OPD | pdb_00004opd

4OPG | pdb_00004opg

4OPI | pdb_00004opi