RCSB PDB: Search

2WL8 \| pdb_00002wl8	Download File View File

X-ray crystal structure of Pex19p

Schueller, N., Holton, S.J., Stanley, W.A., Song, Y.H., Konarev, P., Roessle, M., Erdmann, R., Schliebs, W., Wilmanns, M.

(2010) EMBO J 29: 2491

Released	2010-06-23
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	PEROXISOMAL BIOGENESIS FACTOR 19 (protein)

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4ATH \| pdb_00004ath	Download File View File

MITF apo structure

Pogenberg, V., Milewski, M., Wilmanns, M.

(2012) Genes Dev 26: 2647

Released	2012-12-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mus musculus
Macromolecule	MICROPHTHALMIA-ASSOCIATED TRANSCRIPTION FACTOR (protein)
Unique Ligands	SO4

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4ATI \| pdb_00004ati	Download File View File

MITF:M-box complex

Pogenberg, V., Deineko, V., Wilmanns, M.

(2012) Genes Dev 26: 2647

Released	2012-12-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	MICROPHTHALMIA-ASSOCIATED TRANSCRIPTION FACTOR (protein) 5'-D(APGPGPGPTPCPAPTPGPTPGPCPTPAPAPC)-3' (nucleic acid) 5'-D(GPTPTPAPGPCPAPCPAPTPGPAPCPCPCPT)-3' (nucleic acid)

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4ATK \| pdb_00004atk	Download File View File

MITF:E-box complex

Pogenberg, V., Deineko, V., Wilmanns, M.

(2012) Genes Dev 26: 2647

Released	2012-12-12
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Mus musculus
Macromolecule	MICROPHTHALMIA-ASSOCIATED TRANSCRIPTION FACTOR (protein) 5'-D(APGPTPAPGPCPAPCPGPTPGPCPTPAPCPT)-3' (nucleic acid)

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6FX5 \| pdb_00006fx5	Download File View File

MITF dimerization mutant

Pogenberg, V., Milewski, M., Wilmanns, M.

(2020) Nucleic Acids Res 48: 934-948

Released	2019-03-20
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mus musculus
Macromolecule	Microphthalmia-associated transcription factor (protein)
Unique Ligands	SO4

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7OCH \| pdb_00007och	Download File View File

Apo-structure of Lassa virus L protein (well-resolved polymerase core) [APO-CORE]

Kouba, T., Vogel, D., Thorkelsson, S., Quemin, E., Williams, H.M., Milewski, M., Busch, C., Gunther, S., Grunewald, K., Rosenthal, M., Cusack, S.

(2021) Nat Commun 12: 7018-7018

Released	2021-12-01
Method	ELECTRON MICROSCOPY 3.14 Å
Organisms	Mammarenavirus lassaense
Macromolecule	RNA-directed RNA polymerase L (protein)
Unique Ligands	MG, ZN

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7OE3 \| pdb_00007oe3	Download File View File

Apo-structure of Lassa virus L protein (well-resolved endonuclease) [APO-ENDO]

Kouba, T., Vogel, D., Thorkelsson, S., Quemin, E., Williams, H.M., Milewski, M., Busch, C., Gunther, S., Grunewald, K., Rosenthal, M., Cusack, S.

(2021) Nat Commun 12: 7018-7018

Released	2021-12-01
Method	ELECTRON MICROSCOPY 3.35 Å
Organisms	Mammarenavirus lassaense
Macromolecule	RNA-directed RNA polymerase L (protein)
Unique Ligands	MG, ZN

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7OE7 \| pdb_00007oe7	Download File View File

Apo-structure of Lassa virus L protein (well-resolved alpha ribbon) [APO-RIBBON]

Kouba, T., Vogel, D., Thorkelsson, S., Quemin, E., Williams, H.M., Milewski, M., Busch, C., Gunther, S., Grunewald, K., Rosenthal, M., Cusack, S.

(2021) Nat Commun 12: 7018-7018

Released	2021-12-01
Method	ELECTRON MICROSCOPY 3.73 Å
Organisms	Mammarenavirus lassaense
Macromolecule	RNA-directed RNA polymerase L (protein)
Unique Ligands	MG, ZN

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7OEA \| pdb_00007oea	Download File View File

Lassa virus L protein bound to 3' promoter RNA (well-resolved polymerase core) [3END-CORE]

Kouba, T., Vogel, D., Thorkelsson, S., Quemin, E., Williams, H.M., Milewski, M., Busch, C., Gunther, S., Grunewald, K., Rosenthal, M., Cusack, S.

(2021) Nat Commun 12: 7018-7018

Released	2021-12-01
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Mammarenavirus lassaense
Macromolecule	RNA-directed RNA polymerase L (protein) 3' vRNA (nucleic acid)
Unique Ligands	MG, ZN

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7OEB \| pdb_00007oeb	Download File View File

Lassa virus L protein bound to 3' promoter RNA (well-resolved endonuclease) [3END-ENDO]

Kouba, T., Vogel, D., Thorkelsson, S., Quemin, E., Williams, H.M., Milewski, M., Busch, C., Gunther, S., Grunewald, K., Rosenthal, M., Cusack, S.

(2021) Nat Commun 12: 7018-7018

Released	2021-12-01
Method	ELECTRON MICROSCOPY 3.04 Å
Organisms	Mammarenavirus lassaense
Macromolecule	RNA-directed RNA polymerase L (protein) 3' vRNA (nucleic acid)
Unique Ligands	MG, ZN

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7OJJ \| pdb_00007ojj	Download File View File

Lassa virus L protein with endonuclease and C-terminal domains in close proximity [MID-LINK]

Kouba, T., Vogel, D., Thorkelsson, S., Quemin, E., Williams, H.M., Milewski, M., Busch, C., Gunther, S., Grunewald, K., Rosenthal, M., Cusack, S.

(2021) Nat Commun 12: 7018-7018

Released	2021-12-01
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Mammarenavirus lassaense
Macromolecule	RNA-directed RNA polymerase L (protein)
Unique Ligands	MG, ZN

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7OJK \| pdb_00007ojk	Download File View File

Lassa virus L protein bound to the distal promoter duplex [DISTAL-PROMOTER]

Kouba, T., Vogel, D., Thorkelsson, S., Quemin, E., Williams, H.M., Milewski, M., Busch, C., Gunther, S., Grunewald, K., Rosenthal, M., Cusack, S.

(2021) Nat Commun 12: 7018-7018

Released	2021-12-01
Method	ELECTRON MICROSCOPY 3.89 Å
Organisms	Mammarenavirus lassaense
Macromolecule	RNA-directed RNA polymerase L (protein) 3' RNA (nucleic acid) 5' RNA (nucleic acid)
Unique Ligands	ZN

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7OJL \| pdb_00007ojl	Download File View File

Lassa virus L protein in a pre-initiation conformation [PREINITIATION]

Kouba, T., Vogel, D., Thorkelsson, S., Quemin, E., Williams, H.M., Milewski, M., Busch, C., Gunther, S., Grunewald, K., Rosenthal, M., Cusack, S.

(2021) Nat Commun 12: 7018-7018

Released	2021-12-01
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Mammarenavirus lassaense
Macromolecule	RNA-directed RNA polymerase L (protein) 3' RNA (nucleic acid) 5' RNA (nucleic acid)
Unique Ligands	MN

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7OJN \| pdb_00007ojn	Download File View File

Lassa virus L protein in an elongation conformation [ELONGATION]

Kouba, T., Vogel, D., Thorkelsson, S., Quemin, E., Williams, H.M., Milewski, M., Busch, C., Gunther, S., Grunewald, K., Rosenthal, M., Cusack, S.

(2021) Nat Commun 12: 7018-7018

Released	2021-12-01
Method	ELECTRON MICROSCOPY 2.92 Å
Organisms	Mammarenavirus lassaense
Macromolecule	RNA-directed RNA polymerase L (protein) 3' RNA (nucleic acid) 5' RNA (nucleic acid) product RNA (nucleic acid)
Unique Ligands	2KH, MN, ZN

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8AS6 \| pdb_00008as6	Download File View File

Structure of the SFTSV L protein bound to 5' cRNA hook [5' HOOK]

Williams, H.M., Thorkelsson, S.R., Vogel, D., Milewski, M., Busch, C., Cusack, S., Grunewald, K., Quemin, E.R.J., Rosenthal, M.

(2023) Nucleic Acids Res 51: 1424-1442

Released	2023-01-18
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	SFTS virus AH12
Macromolecule	RNA-dependent RNA-polymerase L protein (protein) RNA (5'-R(APCPAPCPAPGPAPGPAPCPGPCPCPC)-3') (nucleic acid)

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8AS7 \| pdb_00008as7	Download File View File

Structure of the SFTSV L protein stalled at early elongation [EARLY-ELONGATION]

Williams, H.M., Thorkelsson, S.R., Vogel, D., Milewski, M., Busch, C., Cusack, S., Grunewald, K., Quemin, E.R.J., Rosenthal, M.

(2023) Nucleic Acids Res 51: 1424-1442

Released	2023-01-18
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	SFTS virus AH12
Macromolecule	RNA-dependent RNA-polymerase L protein (protein) RNA (5'-R(APCPAPCPAPGPAPGPAPCPGPCPCPCPAPGPA)-3') (nucleic acid) RNA (5'-R(PAPCPA)-3') (nucleic acid) RNA (5'-R(PCPUPGPGPGPCPGPGPUPCPUPUPUPGPUPGP*U)-3') (nucleic acid)
Unique Ligands	2KH, EPE, MG

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8ASB \| pdb_00008asb	Download File View File

Structure of the SFTSV L protein stalled at early elongation with the endonuclease domain in a raised conformation [EARLY-ELONGATION-ENDO]

Williams, H.M., Thorkelsson, S.R., Vogel, D., Milewski, M., Busch, C., Cusack, S., Grunewald, K., Quemin, E.R.J., Rosenthal, M.

(2023) Nucleic Acids Res 51: 1424-1442

Released	2023-01-18
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	SFTS virus AH12
Macromolecule	RNA-dependent RNA-polymerase L protein (protein) RNA (5'-R(APCPAPCPAPGPAPGPAPCPGPCPCPCPAPGPA)-3') (nucleic acid) RNA (5'-R(PAPCPA)-3') (nucleic acid) RNA (5'-R(PUPCPUPGPGPGPCPGPGPUPCPUPUPUPGPUPGPU)-3') (nucleic acid)
Unique Ligands	2KH, MG

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8ASD \| pdb_00008asd	Download File View File

Structure of the SFTSV L protein stalled at late elongation [LATE-ELONGATION]

Williams, H.M., Thorkelsson, S.R., Vogel, D., Milewski, M., Busch, C., Cusack, S., Grunewald, K., Quemin, E.R.J., Rosenthal, M.

(2023) Nucleic Acids Res 51: 1424-1442

Released	2023-01-18
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	SFTS virus AH12
Macromolecule	RNA-directed RNA polymerase (protein) RNA (5'-R(PAPAPAPAPAPAPGPAPUPCPUPGPGPGPCPGPGPUPCPUPUPUPGPUPGPU)-3') (nucleic acid) RNA (5'-R(PAPCPAPCPAPAPAPGPAPCPCPGPCPCPCPAPGPAPCPCPUPUPUPUPUPU)-3') (nucleic acid) RNA (5'-R(PAPCPAPCPAPGPAPGPAPCPGPCPCPCPAPGPAPUPGPA)-3') (nucleic acid)
Unique Ligands	2KH, MG

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8ASG \| pdb_00008asg	Download File View File

Structure of the SFTSV L protein bound in a resting state [RESTING]

Williams, H.M., Thorkelsson, S.R., Vogel, D., Milewski, M., Busch, C., Cusack, S., Grunewald, K., Quemin, E.R.J., Rosenthal, M.

(2023) Nucleic Acids Res 51: 1424-1442

Released	2023-01-18
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	SFTS virus AH12
Macromolecule	RNA-dependent RNA-polymerase L protein (protein) RNA (5'-R(APCPAPCPAPGPAPGPAPCPGPCPCPCPAPGPAPUPGPA)-3') (nucleic acid) RNA (5'-R(GPAPUPCPUPGPGPGPCPGPGPUPCPUPUPUPGPUPGPU)-3') (nucleic acid)
Unique Ligands	MG

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8R6U \| pdb_00008r6u	Download File View File

Structure of the SFTSV L protein in a transcription-priming state without capped RNA [TRANSCRIPTION-PRIMING (in vitro)]

Williams, H.M., Thorkelsson, S.R., Vogel, D., Busch, C., Milewski, M., Cusack, S., Grunewald, K., Quemin, E.R.J., Rosenthal, M.

(2024) Nucleic Acids Res 52: 6049-6065

Released	2024-04-24
Method	ELECTRON MICROSCOPY 2.98 Å
Organisms	SFTS virus AH12
Macromolecule	RNA-directed RNA polymerase L (protein) RNA (5'-R(PCPUPGPGPGPCPGPGPUPCPUPUPUPGPUPGP*U)-3') (nucleic acid) RNA primer (nucleic acid) RNA primer tail-end (nucleic acid)
Unique Ligands	MG

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8R6W \| pdb_00008r6w	Download File View File

Structure of the SFTSV L protein in a transcription-priming state with bound capped RNA [TRANSCRIPTION-PRIMING]

Williams, H.M., Thorkelsson, S.R., Vogel, D., Busch, C., Milewski, M., Cusack, S., Grunewald, K., Quemin, E.R.J., Rosenthal, M.

(2024) Nucleic Acids Res 52: 6049-6065

Released	2024-04-24
Method	ELECTRON MICROSCOPY 3.35 Å
Organisms	SFTS virus AH12
Macromolecule	RNA-directed RNA polymerase L (protein) RNA (5'-R((M7G)APAPA)-3') (nucleic acid) RNA (5'-R(APCPAPC)-3') (nucleic acid) RNA (5'-R(APCPAPCPAPGPAPGPAPCPGPCPCPCPAPG)-3') (nucleic acid) RNA (5'-R(PCPUPGPGPGPCPGPGPUPCPUPUPUPGPUPGP*U)-3') (nucleic acid)

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8R6Y \| pdb_00008r6y	Download File View File

Structure of the SFTSV L protein stalled in a transcription-specific early elongation state with bound capped RNA [TRANSCRIPTION-EARLY-ELONGATION]

Williams, H.M., Thorkelsson, S.R., Vogel, D., Busch, C., Milewski, M., Cusack, S., Grunewald, K., Quemin, E.R.J., Rosenthal, M.

(2024) Nucleic Acids Res 52: 6049-6065

Released	2024-04-24
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	SFTS virus AH12
Macromolecule	RNA-directed RNA polymerase L (protein) RNA (5'-R((M7G)APAPA)-3') (nucleic acid) RNA (5'-R(APCPAPCPAPGPAPGPAPCPGPCPCPCPAPG)-3') (nucleic acid) RNA (5'-R(PAPCPA)-3') (nucleic acid) RNA (5'-R(PCPUPGPGPGPCPGPGPUPAPAPAPUPGPU)-3') (nucleic acid)
Unique Ligands	2KH, MG

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

2WL8 | pdb_00002wl8

4ATH | pdb_00004ath

4ATI | pdb_00004ati

4ATK | pdb_00004atk

6FX5 | pdb_00006fx5

7OCH | pdb_00007och

7OE3 | pdb_00007oe3

7OE7 | pdb_00007oe7

7OEA | pdb_00007oea

7OEB | pdb_00007oeb

7OJJ | pdb_00007ojj

7OJK | pdb_00007ojk

7OJL | pdb_00007ojl

7OJN | pdb_00007ojn

8AS6 | pdb_00008as6

8AS7 | pdb_00008as7

8ASB | pdb_00008asb

8ASD | pdb_00008asd

8ASG | pdb_00008asg

8R6U | pdb_00008r6u

8R6W | pdb_00008r6w

8R6Y | pdb_00008r6y