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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Moore, R.V."

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Search Summary

This query matches 35 Structures.

Refinements

Structure Determination Methodology

experimental (35)

Scientific Name of Source Organism

	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (6)
	Coxsackievirus B3 (5)
	Homo sapiens (5)
	Aspergillus oryzae RIB40 (4)
	synthetic construct (3)
	Bacillus thuringiensis (2)
	Deinococcus radiodurans (2)
	Severe acute respiratory syndrome coronavirus 2 (2)
	Severe acute respiratory syndrome-related coronavirus (2)
	Thermoplasma acidophilum (2)

More...

Taxonomy

	Eukaryota (13)
	Bacteria (10)
	Riboviria (10)
	other sequences (3)
	Archaea (2)

Experimental Method

	X-RAY DIFFRACTION (30)
	SOLUTION NMR (3)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (35)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (11)
	2.0 - 2.5 (5)
	2.5 - 3.0 (8)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)
	> 4.5 (2)

Release Date

	2005 - 2009 (10)
	2010 - 2014 (4)
	2015 - 2019 (3)
	2020 - 2024 (11)
	2025 - 2029 (7)

Enzyme Classification Name

	Hydrolases (14)
	Isomerases (8)
	Lyases (3)
	Transferases (3)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (22)
	Cyclic (17)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	All beta proteins (9)
	All alpha proteins (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 35 Structures

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2M8S \| pdb_00002m8s	Download File View File

NMR Structure of the Cytoplasmic Tail of the Membrane Form of Heparin-binding EGF-like Growth Factor (proHB-EGF-CT) Complexed with the Ubiquitin Homology Domain of Bcl-2-associated Athanogene 1 from Mus musculus (mBAG-1-UBH)

Huang, H.W., Yu, C.

(2014) Biochemistry 53: 1935-1946

Released	2014-04-16
Method	SOLUTION NMR
Organisms	Homo sapiens Mus musculus
Macromolecule	BAG family molecular chaperone regulator 1 (protein) Proheparin-binding EGF-like growth factor (protein)

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2MCR \| pdb_00002mcr	Download File View File

Solution structure of ShK-like immunomodulatory peptide from Brugia malayi (filarial worm)

Chhabra, S., Swarbrick, J.D., Pennington, M.W., Chang, S.C., Norton, R.S.

(2014) FASEB J 28: 3952-3964

Released	2014-07-02
Method	SOLUTION NMR
Organisms	Brugia malayi
Macromolecule	Probable zinc metalloproteinase, putative (protein)

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2MD0 \| pdb_00002md0	Download File View File

Solution structure of ShK-like immunomodulatory peptide from Ancylostoma caninum (hookworm)

Chhabra, S., Swarbrick, J.D., Mohanty, B., Chang, S.C., Chandy, G.K., Pennington, M.W., Norton, R.S.

(2014) FASEB J 28: 3952-3964

Released	2014-07-02
Method	SOLUTION NMR
Organisms	Ancylostoma caninum
Macromolecule	AcK1 (protein)

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2ZTX \| pdb_00002ztx	Download File View File

Complex structure of CVB3 3C protease with EPDTC

Lee, C.C., Wang, A.H.-J.

(2009) J Biological Chem 284: 7646-7655

Released	2009-01-13
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Coxsackievirus B3
Macromolecule	3C proteinase (protein)
Unique Ligands	DTZ

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2ZTY \| pdb_00002zty	Download File View File

crystal structure of 3C protease from CVB3 in space group C2

Lee, C.C., Wang, A.H.-J.

(2009) J Biological Chem 284: 7646-7655

Released	2009-01-13
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Coxsackievirus B3
Macromolecule	3C proteinase (protein)

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2ZTZ \| pdb_00002ztz	Download File View File

crystal structure of 3C protease from CVB3 in space group P21

Lee, C.C., Wang, A.H.-J.

(2009) J Biological Chem 284: 7646-7655

Released	2009-01-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Coxsackievirus B3
Macromolecule	3C proteinase (protein)

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2ZU1 \| pdb_00002zu1	Download File View File

crystal structure of CVB3 3C protease mutant C147A

Lee, C.C., Tsui, Y.C., Wang, A.H.-J.

(2009) J Biological Chem 284: 7646-7655

Released	2009-01-13
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Coxsackievirus B3
Macromolecule	3C proteinase (protein)

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2ZU2 \| pdb_00002zu2	Download File View File

complex structure of CoV 229E 3CL protease with EPDTC

Lee, C.C., Wang, A.H.-J.

(2009) J Biological Chem 284: 7646-7655

Released	2009-01-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human coronavirus 229E
Macromolecule	3C-like proteinase (protein)
Unique Ligands	DTZ, MPD

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2ZU3 \| pdb_00002zu3	Download File View File

Complex structure of CVB3 3C protease with TG-0204998

Lee, C.C., Tsui, Y.C., Wang, A.H.-J.

(2009) J Biological Chem 284: 7646-7655

Released	2009-01-13
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Coxsackievirus B3
Macromolecule	3C proteinase (protein)
Unique Ligands	ZU3

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2ZU4 \| pdb_00002zu4	Download File View File

Complex structure of SARS-CoV 3CL protease with TG-0204998

Hsu, M.F., Lee, C.C., Wang, A.H.-J.

(2009) J Biological Chem 284: 7646-7655

Released	2009-01-13
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ZU3

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2ZU5 \| pdb_00002zu5	Download File View File

complex structure of SARS-CoV 3CL protease with TG-0205486

Hsu, M.F., Lee, C.C., Wang, A.H.-J.

(2009) J Biological Chem 284: 7646-7655

Released	2009-01-13
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ZU5

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3C91 \| pdb_00003c91	Download File View File

Thermoplasma acidophilum 20S proteasome with an open gate

Rabl, J., Smith, D.M., Yu, Y., Chang, S.C., Goldberg, A.L., Cheng, Y.

(2008) Mol Cell 30: 360-368

Released	2008-08-05
Method	ELECTRON MICROSCOPY 6.8 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proteasome subunit alpha (protein) Proteasome subunit beta (protein)

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3C92 \| pdb_00003c92	Download File View File

Thermoplasma acidophilum 20S proteasome with a closed gate

Rabl, J., Smith, D.M., Yu, Y., Chang, S.C., Goldberg, A.L., Cheng, Y.

(2008) Mol Cell 30: 360-368

Released	2008-08-05
Method	ELECTRON MICROSCOPY 6.8 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Proteasome subunit alpha (protein) Proteasome subunit beta (protein)

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3MDJ \| pdb_00003mdj	Download File View File

ER Aminopeptidase, ERAP1, Bound to the Zinc Aminopeptidase Inhibitor, Bestatin

Nguyen, T.T., Stern, L.J.

(2011) Nat Struct Mol Biol 18: 604-613

Released	2011-03-30
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	Endoplasmic reticulum aminopeptidase 1 (protein)
Unique Ligands	BES, NAG, ZN
Unique branched monosaccharides	BMA, MAN, NAG

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5BOL \| pdb_00005bol	Download File View File

DNA polymerase beta ternary complex with a templating 5ClC and incoming dGTP analog

Freudenthal, B.D., Wilson, S.H.

(2015) Proc Natl Acad Sci U S A 112: E4571-E4580

Released	2015-08-19
Method	X-RAY DIFFRACTION 1.981 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase beta (protein) DNA (5'-D(CPCPGPAPCP(CDO)PGPCPGPCPAPTPCPAPGPC)-3') (nucleic acid) DNA (5'-D(GPCPTPGPAPTPGPCPGPC)-3') (nucleic acid) DNA (5'-D(PGPTPCPGP*G)-3') (nucleic acid)
Unique Ligands	1GC, MG, NA

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5BOM \| pdb_00005bom	Download File View File

DNA polymerase beta binary complex with a templating 5ClC

Freudenthal, B.D., Wilson, S.H.

(2015) Proc Natl Acad Sci U S A 112: E4571-E4580

Released	2015-08-19
Method	X-RAY DIFFRACTION 2.0002 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase beta (protein) DNA (5'-D(CPCPGPAPCP(4U3)PGPCPGPCPAPTPCPAPGPC)-3') (nucleic acid) DNA (5'-D(GPCPTPGPAPTPGPCPGPC)-3') (nucleic acid) DNA (5'-D(PGPTPCPGP*G)-3') (nucleic acid)
Unique Ligands	NA

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5BPC \| pdb_00005bpc	Download File View File

DNA polymerase beta ternary complex with a templating 5ClC and incoming dATP analog

Freudenthal, B.D., Wilson, S.H.

(2015) Proc Natl Acad Sci U S A 112: E4571-E4580

Released	2015-08-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase beta (protein) DNA (5'-D(CPCPGPAPCP(CDO)PGPCPGPCPAPTPCPAPGPC)-3') (nucleic acid) DNA (5'-D(GPCPTPGPAPTPGPCPGPC)-3') (nucleic acid) DNA (5'-D(PGPTPCPGP*G)-3') (nucleic acid)
Unique Ligands	F2A, MN, NA

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7C2P \| pdb_00007c2p	Download File View File

Structure of Egk Peptide

El Sahili, A.

(2020) Acs Pharmacol Transl Sci 3: 720-736

Released	2020-09-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Elaeis guineensis
Macromolecule	Plant defensing Egk (protein)

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7C31 \| pdb_00007c31	Download File View File

Crystal structure of the grapevine defensin VvK1

Chen, M.W., Chang, S.C., Chandy, K.G., Luo, D.

(2020) Acs Pharmacol Transl Sci 3: 720-736

Released	2020-09-16
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Vitis vinifera
Macromolecule	Knot1 domain-containing protein (protein)

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7C33 \| pdb_00007c33	Download File View File

Macro domain of SARS-CoV-2 in complex with ADP-ribose

Lin, M.H., Hsu, C.H.

(2020) ACS Infect Dis 6: 2970-2978

Released	2020-11-11
Method	X-RAY DIFFRACTION 3.83 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 3 (protein)
Unique Ligands	APR

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7CZ4 \| pdb_00007cz4	Download File View File

Structure of SARS-CoV-2 macro domain in complex with ADP-ribose

Lin, M.H., Hsu, C.H.

(2020) ACS Infect Dis 6: 2970-2978

Released	2020-11-11
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 3 (protein)
Unique Ligands	APR

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7DRY \| pdb_00007dry	Download File View File

Crystal structure of Aspergillus oryzae Rib2 deaminase

Chen, S.C., Liaw, S.H., Hsu, C.H.

(2021) IUCrJ 8: 549-558

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Aspergillus oryzae RIB40
Macromolecule	CMP/dCMP-type deaminase domain-containing protein (protein)
Unique Ligands	SO4, ZN

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7DRZ \| pdb_00007drz	Download File View File

Crystal structure of Aspergillus oryzae Rib2 deaminase (C-terminal deletion mutant) at pH 4.6

Chen, S.C., Liaw, S.H., Hsu, C.H.

(2021) IUCrJ 8: 549-558

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Aspergillus oryzae RIB40
Macromolecule	CMP/dCMP-type deaminase domain-containing protein (protein)
Unique Ligands	ZN

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7DS0 \| pdb_00007ds0	Download File View File

Crystal structure of Aspergillus oryzae Rib2 deaminase (C-terminal deletion mutant) at pH 6.5

Chen, S.C., Liaw, S.H., Hsu, C.H.

(2021) IUCrJ 8: 549-558

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Aspergillus oryzae RIB40
Macromolecule	CMP/dCMP-type deaminase domain-containing protein (protein)
Unique Ligands	SO4, ZN

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7DS1 \| pdb_00007ds1	Download File View File

Crystal structure of Aspergillus oryzae Rib2 deaminase in complex with DARIPP (C-terminal deletion mutant at pH 6.5)

Chen, S.C., Liaw, S.H., Hsu, C.H.

(2021) IUCrJ 8: 549-558

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Aspergillus oryzae RIB40
Macromolecule	CMP/dCMP-type deaminase domain-containing protein (protein)
Unique Ligands	HJL, ZN

1 to 25 of 35 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2M8S | pdb_00002m8s

2MCR | pdb_00002mcr

2MD0 | pdb_00002md0

2ZTX | pdb_00002ztx

2ZTY | pdb_00002zty

2ZTZ | pdb_00002ztz

2ZU1 | pdb_00002zu1

2ZU2 | pdb_00002zu2

2ZU3 | pdb_00002zu3

2ZU4 | pdb_00002zu4

2ZU5 | pdb_00002zu5

3C91 | pdb_00003c91

3C92 | pdb_00003c92

3MDJ | pdb_00003mdj

5BOL | pdb_00005bol

5BOM | pdb_00005bom

5BPC | pdb_00005bpc

7C2P | pdb_00007c2p

7C31 | pdb_00007c31

7C33 | pdb_00007c33

7CZ4 | pdb_00007cz4

7DRY | pdb_00007dry

7DRZ | pdb_00007drz

7DS0 | pdb_00007ds0

7DS1 | pdb_00007ds1