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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Mortara, K."

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Search Summary

This query matches 48 Structures.

Refinements

Structure Determination Methodology

experimental (48)

Scientific Name of Source Organism

	Homo sapiens (48)
	Aliarcobacter butzleri RM4018 (1)
	Hirudo medicinalis (1)
	Oryctolagus cuniculus (1)

Taxonomy

	Eukaryota (48)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (47)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (48)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (15)
	2.0 - 2.5 (16)
	2.5 - 3.0 (12)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (8)
	2005 - 2009 (7)
	2010 - 2014 (8)
	2015 - 2019 (16)
	2020 - 2024 (9)

Enzyme Classification Name

	Transferases (31)
	Hydrolases (14)
	Oxidoreductases (1)

Membrane Protein Annotation

	OPM (2)
	PDBTM (2)
	mpstruc (2)
	MemProtMD (1)

Symmetry Type

	Asymmetric (36)
	Cyclic (14)

SCOP Classification

	Alpha and beta proteins (a+b) (25)
	All beta proteins (15)
	Artifacts (7)
	Small proteins (1)

AllSelected

1 to 25 of 48 Structures

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1O5A \| pdb_00001o5a	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Homo sapiens
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	696, CIT

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1O5B \| pdb_00001o5b	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	CIT, ESI

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1O5C \| pdb_00001o5c	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	CIT, CR9

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1O5D \| pdb_00001o5d	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor VII (protein) Tissue factor (protein)
Unique Ligands	CR9

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1O5E \| pdb_00001o5e	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Serine protease hepsin (protein)
Unique Ligands	132

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1O5F \| pdb_00001o5f	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Homo sapiens
Macromolecule	Serine protease hepsin (protein)
Unique Ligands	CR9

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1O5G \| pdb_00001o5g	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	Hirudin IIIB' (protein) Prothrombin (protein)
Unique Ligands	CA, CR9, NA

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1P57 \| pdb_00001p57	Download File View File

Extracellular domain of human hepsin

Somoza, J.R., Ho, J.D., Luong, C., Sprengeler, P.A., Mortara, K., Shrader, W.D., Sperandio, D., Chan, H., McGrath, M.E., Katz, B.A.

(2003) Structure 11: 1123-1131

Released	2004-01-20
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Serine protease hepsin (protein)
Unique Ligands	CR4

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2QQI \| pdb_00002qqi	Download File View File

Crystal Structure of the b1b2 Domains from Human Neuropilin-1

Appleton, B.A., Desmarais, W., Wiesmann, C.

(2007) EMBO J 26: 4902-4912

Released	2007-11-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Neuropilin-1 (protein)
Unique Ligands	GOL

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2QQJ \| pdb_00002qqj	Download File View File

Crystal Structure of the b1b2 Domains from Human Neuropilin-2

Appleton, B.A., Wiesmann, C.

(2007) EMBO J 26: 4902-4912

Released	2007-11-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Neuropilin-2 (protein)
Unique Ligands	GOL

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2QQK \| pdb_00002qqk	Download File View File

Neuropilin-2 a1a2b1b2 Domains in Complex with a Semaphorin-Blocking Fab

Appleton, B.A., Wiesmann, C.

(2007) EMBO J 26: 4902-4912

Released	2007-11-20
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Antibody Heavy Chain (protein) Antibody Light Chain (protein) Neuropilin-2 (protein)
Unique Ligands	NAG

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2QQL \| pdb_00002qql	Download File View File

Neuropilin-2 a1a2b1b2 Domains in Complex with a Semaphorin-Blocking Fab

Appleton, B.A., Wiesmann, C.

(2007) EMBO J 26: 4902-4912

Released	2007-11-20
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Antibody Heavy Chain (protein) Antibody Light Chain (protein) Neuropilin-2 (protein)

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2QQM \| pdb_00002qqm	Download File View File

Crystal Structure of the a2b1b2 Domains from Human Neuropilin-1

Appleton, B.A., Wiesmann, C.

(2007) EMBO J 26: 4902-4912

Released	2007-11-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Neuropilin-1 (protein)
Unique Ligands	CA, EDO
Unique branched monosaccharides	FUC, NAG

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2QQN \| pdb_00002qqn	Download File View File

Neuropilin-1 b1 Domain in Complex with a VEGF-Blocking Fab

Appleton, B.A., Wiesmann, C.

(2007) EMBO J 26: 4902-4912

Released	2007-11-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Antibody heavy chain (protein) Antibody light chain (protein) Neuropilin-1 (protein)
Unique Ligands	EDO

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2QQO \| pdb_00002qqo	Download File View File

Crystal Structure of the a2b1b2 Domains from Human Neuropilin-2

Appleton, B.A., Wiesmann, C.

(2007) EMBO J 26: 4902-4912

Released	2007-11-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Neuropilin-2 (protein)
Unique Ligands	CA, EDO, TRS

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3NYX \| pdb_00003nyx	Download File View File

Non-phosphorylated TYK2 JH1 domain with Quinoline-Thiadiazole-Thiophene Inhibitor

Eigenbrot, C., Ultsch, M.

(2011) Proteins 79: 393-401

Released	2010-10-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Non-receptor tyrosine-protein kinase TYK2 (protein)
Unique Ligands	DTT, TZ1