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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Murray, D.T."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Cryphonectria parasitica (11)
	Bos taurus (1)
	Homo sapiens (1)
	Streptococcus pyogenes NZ131 (1)
	Thermotoga maritima MSB8 (1)
	Trypanosoma brucei (1)

Taxonomy

	Eukaryota (13)
	Bacteria (1)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (13)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (5)
	2.5 - 3.0 (1)
	3.5 - 4.0 (1)

Release Date

	1990 - 1994 (8)
	2010 - 2014 (5)
	2020 - 2024 (1)

Enzyme Classification Name

Hydrolases (13)

Symmetry Type

	Asymmetric (13)
	Icosahedral (1)

SCOP Classification

	All beta proteins (12)
	All alpha proteins (1)

AllSelected

1 to 14 of 14 Structures

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1EPL \| pdb_00001epl	Download File View File

A STRUCTURAL COMPARISON OF 21 INHIBITOR COMPLEXES OF THE ASPARTIC PROTEINASE FROM ENDOTHIA PARASITICA

Al-Karadaghi, S., Cooper, J.B., Strop, P., Blundell, T.L.

(1994) Protein Sci 3: 2129-2143

Released	1994-12-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein) PS1, PRO-LEU-GLU-PSA-ARG-LEU (protein)

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1EPM \| pdb_00001epm	Download File View File

A STRUCTURAL COMPARISON OF 21 INHIBITOR COMPLEXES OF THE ASPARTIC PROTEINASE FROM ENDOTHIA PARASITICA

Crawford, M., Cooper, J.B., Strop, P., Blundell, T.L.

(1994) Protein Sci 3: 2129-2143

Released	1994-12-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein) PS2, THR-PHE-GLN-ALA-PSA-LEU-ARG-GLU (protein)
Unique Ligands	SO4

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1EPN \| pdb_00001epn	Download File View File

A STRUCTURAL COMPARISON OF 21 INHIBITOR COMPLEXES OF THE ASPARTIC PROTEINASE FROM ENDOTHIA PARASITICA

Crawford, M., Cooper, J.B., Blundell, T.L.

(1994) Protein Sci 3: 2129-2143

Released	1994-12-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein)
Unique Ligands	2ZS, SO4

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1EPO \| pdb_00001epo	Download File View File

ENDOTHIA ASPARTIC PROTEINASE (ENDOTHIAPEPSIN) COMPLEXED WITH CP-81,282 (MOR PHE NLE CHF NME)

Veerapandian, B., Cooper, J.B., Blundell, T.L.

(1992) Protein Sci 1: 322-328

Released	1994-12-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein)
Unique Ligands	2Z3

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1EPP \| pdb_00001epp	Download File View File

ENDOTHIA ASPARTIC PROTEINASE (ENDOTHIAPEPSIN) COMPLEXED WITH PD-130,693 (MAS PHE LYS+MTF STA MBA)

Wallace, B.A., Cooper, J.B., Blundell, T.L.

(1993) J Med Chem 36: 3809-3820

Released	1994-12-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein)
Unique Ligands	1Z1, SO4

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1EPQ \| pdb_00001epq	Download File View File

ENDOTHIA ASPARTIC PROTEINASE (ENDOTHIAPEPSIN) COMPLEXED WITH PD-133,450 (SOT PHE GLY+SCC GCL)

Dealwis, C., Cooper, J.B., Blundell, T.L.

(1993) J Med Chem 36: 3809-3820

Released	1994-12-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein)
Unique Ligands	0QF, SO4

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1EPR \| pdb_00001epr	Download File View File

ENDOTHIA ASPARTIC PROTEINASE (ENDOTHIAPEPSIN) COMPLEXED WITH PD-135,040

Badasso, M., Crawford, M., Cooper, J.B., Blundell, T.L.

(1994) Protein Sci 3: 2129-2143

Released	1994-12-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein)
Unique Ligands	0QS

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3ER5 \| pdb_00003er5	Download File View File

THE ACTIVE SITE OF ASPARTIC PROTEINASES

Bailey, D., Veerapandian, B., Cooper, J., Szelke, M., Blundell, T.L.

(1993) Biochem J 289 ( Pt 2): 363-371

Released	1991-04-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein) H-189 (protein)

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3URI \| pdb_00003uri	Download File View File

Endothiapepsin-DB5 complex.

Bailey, D., Sanz-Aparicio, J., Albert, A., Cooper, J.B.

(2012) Acta Crystallogr D Biol Crystallogr 68: 541-552

Released	2012-04-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Cryphonectria parasitica
Macromolecule	DB5 peptide (protein) Endothiapepsin (protein)

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3URJ \| pdb_00003urj	Download File View File

Type IV native endothiapepsin

Bailey, D., Cooper, J.B.

(2012) Acta Crystallogr D Biol Crystallogr 68: 541-552

Released	2012-04-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	SO4

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3URL \| pdb_00003url	Download File View File

Endothiapepsin-DB6 complex.

Bailey, D., Sanz-Aparicio, J., Albert, A., Cooper, J.B.

(2012) Acta Crystallogr D Biol Crystallogr 68: 541-552

Released	2012-04-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cryphonectria parasitica
Macromolecule	DB6 peptide (protein) Endothiapepsin (protein)
Unique Ligands	SO4

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3UTL \| pdb_00003utl	Download File View File

Human pepsin 3b

Coker, A., Cooper, J.B.

(2012) Acta Crystallogr D Biol Crystallogr 68: 541-552

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Homo sapiens
Macromolecule	Pepsin A (protein)

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4I15 \| pdb_00004i15	Download File View File

Crystal structure of TbrPDEB1

Wang, H., Ke, H.

(2013) J Med Chem 56: 2087-2096

Released	2013-03-13
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Trypanosoma brucei
Macromolecule	Class 1 phosphodiesterase PDEB1 (protein)
Unique Ligands	MG, ZN

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7B3Y \| pdb_00007b3y	Download File View File

Structure of a nanoparticle for a COVID-19 vaccine candidate

Duyvesteyn, H.M.E., Stuart, D.I.

(2021) Nat Commun 12: 542-542

Released	2021-01-13
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Streptococcus pyogenes NZ131 Thermotoga maritima MSB8
Macromolecule	Fibronectin binding protein,2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (protein)

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1EPL | pdb_00001epl

A STRUCTURAL COMPARISON OF 21 INHIBITOR COMPLEXES OF THE ASPARTIC PROTEINASE FROM ENDOTHIA PARASITICA

1EPM | pdb_00001epm

A STRUCTURAL COMPARISON OF 21 INHIBITOR COMPLEXES OF THE ASPARTIC PROTEINASE FROM ENDOTHIA PARASITICA

1EPN | pdb_00001epn

A STRUCTURAL COMPARISON OF 21 INHIBITOR COMPLEXES OF THE ASPARTIC PROTEINASE FROM ENDOTHIA PARASITICA

1EPO | pdb_00001epo

ENDOTHIA ASPARTIC PROTEINASE (ENDOTHIAPEPSIN) COMPLEXED WITH CP-81,282 (MOR PHE NLE CHF NME)

1EPP | pdb_00001epp

ENDOTHIA ASPARTIC PROTEINASE (ENDOTHIAPEPSIN) COMPLEXED WITH PD-130,693 (MAS PHE LYS+MTF STA MBA)

1EPQ | pdb_00001epq

ENDOTHIA ASPARTIC PROTEINASE (ENDOTHIAPEPSIN) COMPLEXED WITH PD-133,450 (SOT PHE GLY+SCC GCL)

1EPR | pdb_00001epr

ENDOTHIA ASPARTIC PROTEINASE (ENDOTHIAPEPSIN) COMPLEXED WITH PD-135,040

3ER5 | pdb_00003er5

THE ACTIVE SITE OF ASPARTIC PROTEINASES

3URI | pdb_00003uri

Endothiapepsin-DB5 complex.

3URJ | pdb_00003urj

Type IV native endothiapepsin

3URL | pdb_00003url

Endothiapepsin-DB6 complex.

3UTL | pdb_00003utl

Human pepsin 3b

4I15 | pdb_00004i15

Crystal structure of TbrPDEB1

7B3Y | pdb_00007b3y

Structure of a nanoparticle for a COVID-19 vaccine candidate

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1EPL | pdb_00001epl

1EPM | pdb_00001epm

1EPN | pdb_00001epn

1EPO | pdb_00001epo

1EPP | pdb_00001epp

1EPQ | pdb_00001epq

1EPR | pdb_00001epr

3ER5 | pdb_00003er5

3URI | pdb_00003uri

3URJ | pdb_00003urj

3URL | pdb_00003url

3UTL | pdb_00003utl

4I15 | pdb_00004i15

7B3Y | pdb_00007b3y