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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Nakayama, A."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Homo sapiens (5)
	Streptomyces morookaense (3)
	Bacillus subtilis (2)

Taxonomy

	Bacteria (5)
	Eukaryota (5)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (4)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2010 - 2014 (4)
	2020 - 2024 (2)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (3)
	Transferases (3)
	Oxidoreductases (1)

Symmetry Type

Asymmetric (10)

SCOP Classification

	All beta proteins (2)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 10 of 10 Structures

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1BAG	Download File View File

ALPHA-AMYLASE FROM BACILLUS SUBTILIS COMPLEXED WITH MALTOPENTAOSE

Fujimoto, Z., Mizuno, H., Takase, K., Doui, N.

(1998) J Mol Biology 277: 393-407

Released	1998-10-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus subtilis
Macromolecule	ALPHA-1,4-GLUCAN-4-GLUCANOHYDROLASE (protein)
Unique Ligands	CA
Unique branched monosaccharides	BGC, GLC

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1UA7	Download File View File

Crystal Structure Analysis of Alpha-Amylase from Bacillus Subtilis complexed with Acarbose

Kagawa, M., Fujimoto, Z., Momma, M., Takase, K., Mizuno, H.

(2003) J Bacteriol 185: 6981-6984

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Bacillus subtilis
Macromolecule	Alpha-amylase (protein)
Unique Ligands	ACI, CA
Unique branched monosaccharides	BGC, G6D, GLC, GLD

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3AZO	Download File View File

Crystal structure of puromycin hydrolase

Matoba, Y., Sugiyama, M.

(2011) Proteins 79: 2999-3005

Released	2011-07-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces morookaense
Macromolecule	Aminopeptidase (protein)
Unique Ligands	SO4

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3AZP	Download File View File

Crystal structure of puromycin hydrolase S511A mutant

Matoba, Y., Sugiyama, M.

(2011) Proteins 79: 2999-3005

Released	2011-07-27
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Streptomyces morookaense
Macromolecule	Aminopeptidase (protein)
Unique Ligands	SO4

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3AZQ	Download File View File

Crystal structure of puromycin hydrolase S511A mutant complexed with PGG

Matoba, Y., Sugiyama, M.

(2011) Proteins 79: 2999-3005

Released	2011-07-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptomyces morookaense
Macromolecule	Aminopeptidase (protein) tripeptide PGG (protein)
Unique Ligands	SO4

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3RCD	Download File View File

HER2 Kinase Domain Complexed with TAK-285

Aertgeerts, K., Skene, R., Sogabe, S.

(2011) J Med Chem 54: 8030-8050

Released	2011-11-23
Method	X-RAY DIFFRACTION 3.21 Å
Organisms	Homo sapiens
Macromolecule	Receptor tyrosine-protein kinase erbB-2 (protein)
Unique Ligands	03P

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8JF5	Download File View File

Crystal structure of Lysine Specific Demethylase 1 (LSD1) with TAS1440

Fukushima, H., Machida, T., Yamashita, S., Suzuki, T.

To be published

Released	2024-05-22
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific histone demethylase 1A (protein) REST corepressor 1 (protein)
Unique Ligands	FAD, GOL, UEU

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8X6R	Download File View File

KRasG12C in complex with inhibitor

Amano, Y., Tateishi, Y.

(2023) Bioorg Med Chem 98: 117581-117581

Released	2024-01-17
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Isoform 2B of GTPase KRas (protein)
Unique Ligands	GDP, MG, Y9D

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8YP4	Download File View File

Structure of MAP2K1 complexed with 5Z7-oxozeaenol

Yumura, S., Kinoshita, T.

(2024) Bioorg Med Chem Lett 112: 129914-129914

Released	2025-01-22
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity mitogen-activated protein kinase kinase 1 (protein)
Unique Ligands	GOL, WNT

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8YP5	Download File View File

The structure of MAP2K4 complexed with 5Z7-oxozeaenol

Yumura, S., Kinishita, T.

(2024) Bioorg Med Chem Lett 112: 129914-129914

Released	2025-01-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity mitogen-activated protein kinase kinase 4 (protein)
Unique Ligands	1FM, MG