RCSB PDB: Search

1XG5 \| pdb_00001xg5	Download File View File

Structure of human putative dehydrogenase MGC4172 in complex with NADP

Kavanagh, K., Ng, S., Sharma, S., Vedadi, M., von Delft, F., Walker, J.R., dhe Paganon, S., Bray, J., Oppermann, U., Edwards, A., Arrowsmith, C., Sundstrom, M., Structural Genomics Consortium (SGC)

To be published

Released	2004-10-05
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Homo sapiens
Macromolecule	ARPG836 (protein)
Unique Ligands	ACY, NAP

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1YB1 \| pdb_00001yb1	Download File View File

Crystal structure of human 17-beta-hydroxysteroid dehydrogenase type XI

Lukacik, P., Bunkoczi, G., Kavanagh, K., Ng, S., von Delft, F., Bray, J., Edwards, A., Arrowsmith, C., Sundstrom, M., Oppermann, U., Structural Genomics Consortium (SGC)

To be published

Released	2004-12-28
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	17-beta-hydroxysteroid dehydrogenase type XI (protein)
Unique Ligands	AOI, CL, GOL, SO4

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1YSG \| pdb_00001ysg	Download File View File

Solution Structure of the Anti-apoptotic Protein Bcl-xL in Complex with "SAR by NMR" Ligands

Oltersdorf, T., Elmore, S.W., Shoemaker, A.R., Armstrong, R.C., Augeri, D.J., Belli, B.A., Bruncko, M., Deckwerth, T.L., Dinges, J., Hajduk, P.J., Joseph, M.K., Kitada, S., Korsmeyer, S.J., Kunzer, A.R., Letai, A., Li, C., Mitten, M.J., Nettesheim, D.G., Ng, S., Nimmer, P.M., O'Connor, J.M., Oleksijew, A., Petros, A.M., Reed, J.C., Shen, W., Tahir, S.K., Thompson, C.B., Tomaselli, K.J., Wang, B., Wendt, M.D., Zhang, H., Fesik, S.W., Rosenberg, S.H.

(2005) Nature 435: 677-681

Released	2005-06-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator Bcl-X (protein)
Unique Ligands	4FC, TN1

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1YSI \| pdb_00001ysi	Download File View File

Solution structure of the anti-apoptotic protein Bcl-xL in complex with an acyl-sulfonamide-based ligand

Oltersdorf, T., Elmore, S.W., Shoemaker, A.R., Armstrong, R.C., Augeri, D.J., Belli, B.A., Bruncko, M., Deckwerth, T.L., Dinges, J., Hajduk, P.J., Joseph, M.K., Kitada, S., Korsmeyer, S.J., Kunzer, A.R., Letai, A., Li, C., Mitten, M.J., Nettesheim, D.G., Ng, S., Nimmer, P.M., O'Connor, J.M., Oleksijew, A., Petros, A.M., Reed, J.C., Shen, W., Tahir, S.K., Thompson, C.B., Tomaselli, K.J., Wang, B., Wendt, M.D., Zhang, H., Fesik, S.W., Rosenberg, S.H.

(2005) Nature 435: 677-681

Released	2005-06-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator Bcl-X (protein)
Unique Ligands	N3B

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1YSN \| pdb_00001ysn	Download File View File

Solution structure of the anti-apoptotic protein Bcl-xL complexed with an acyl-sulfonamide-based ligand

Oltersdorf, T., Elmore, S.W., Shoemaker, A.R., Armstrong, R.C., Augeri, D.J., Belli, B.A., Bruncko, M., Deckwerth, T.L., Dinges, J., Hajduk, P.J., Joseph, M.K., Kitada, S., Korsmeyer, S.J., Kunzer, A.R., Letai, A., Li, C., Mitten, M.J., Nettesheim, D.G., Ng, S., Nimmer, P.M., O'Connor, J.M., Oleksijew, A., Petros, A.M., Reed, J.C., Shen, W., Tahir, S.K., Thompson, C.B., Tomaselli, K.J., Wang, B., Wendt, M.D., Zhang, H., Fesik, S.W., Rosenberg, S.H.

(2005) Nature 435: 677-681

Released	2005-06-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator Bcl-X (protein)
Unique Ligands	43B

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1YSW \| pdb_00001ysw	Download File View File

Solution structure of the anti-apoptotic protein Bcl-2 complexed with an acyl-sulfonamide-based ligand

Oltersdorf, T., Elmore, S.W., Shoemaker, A.R., Armstrong, R.C., Augeri, D.J., Belli, B.A., Bruncko, M., Deckwerth, T.L., Dinges, J., Hajduk, P.J., Joseph, M.K., Kitada, S., Korsmeyer, S.J., Kunzer, A.R., Letai, A., Li, C., Mitten, M.J., Nettesheim, D.G., Ng, S., Nimmer, P.M., O'Connor, J.M., Oleksijew, A., Petros, A.M., Reed, J.C., Shen, W., Tahir, S.K., Thompson, C.B., Tomaselli, K.J., Wang, B., Wendt, M.D., Zhang, H., Fesik, S.W., Rosenberg, S.H.

(2005) Nature 435: 677-681

Released	2005-06-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator Bcl-2 (protein)
Unique Ligands	43B

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1YSX \| pdb_00001ysx	Download File View File

Solution structure of domain 3 from human serum albumin complexed to an anti-apoptotic ligand directed against Bcl-xL and Bcl-2

Oltersdorf, T., Elmore, S.W., Shoemaker, A.R., Armstrong, R.C., Augeri, D.J., Belli, B.A., Bruncko, M., Deckwerth, T.L., Dinges, J., Hajduk, P.J., Joseph, M.K., Kitada, S., Korsmeyer, S.J., Kunzer, A.R., Letai, A., Li, C., Mitten, M.J., Nettesheim, D.G., Ng, S., Nimmer, P.M., O'Connor, J.M., Oleksijew, A., Petros, A.M., Reed, J.C., Shen, W., Tahir, S.K., Thompson, C.B., Tomaselli, K.J., Wang, B., Wendt, M.D., Zhang, H., Fesik, S.W., Rosenberg, S.H.

(2005) Nature 435: 677-681

Released	2005-06-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Serum albumin (protein)
Unique Ligands	4EB

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1YXM \| pdb_00001yxm	Download File View File

Crystal structure of peroxisomal trans 2-enoyl CoA reductase

Jansson, A., Ng, S., Arrowsmith, C., Sharma, S., Edwards, A.M., Von Delft, F., Sundstrom, M., Oppermann, U., Structural Genomics Consortium (SGC)

To be published

Released	2005-03-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	peroxisomal trans 2-enoyl CoA reductase (protein)
Unique Ligands	ADE, PO4, SO4

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1Z6Z \| pdb_00001z6z	Download File View File

Crystal Structure of Human Sepiapterin Reductase in complex with NADP+

Ugochukwu, E., Kavanagh, K., Ng, S., Arrowsmith, C., Edwards, A., Sundstrom, M., von Delft, F., Oppermann, U., Structural Genomics Consortium (SGC)

To be published

Released	2005-04-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Sepiapterin reductase (protein)
Unique Ligands	CL, NAP, SO4

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2BLE \| pdb_00002ble	Download File View File

Structure of human guanosine monophosphate reductase GMPR1 in complex with GMP

Bunkoczi, G., Haroniti, A., Ng, S., von Delft, F., Oppermann, U., Arrowsmith, C., Sundstrom, M., Edwards, A., Gileadi, O.

To be published

Released	2005-03-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	GMP REDUCTASE I (protein)
Unique Ligands	5GP, NA

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2BWG \| pdb_00002bwg	Download File View File

Structure of human guanosine monophosphate reductase GMPR1 in complex with GMP

Bunkoczi, G., Haroniti, A., Ng, S., von Delft, F., Gileadi, O., Oppermann, U., Arrowsmith, C., Edwards, A., Sundstrom, M.

To be published

Released	2005-07-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	GMP REDUCTASE I (protein)
Unique Ligands	5GP, K

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2GDO \| pdb_00002gdo	Download File View File

4-(Aminoalkylamino)-3-Benzimidazole-Quinolinones As Potent CHK1 Inhibitors

Le, V., Dove, J., Fang, E., Bussiere, D.E.

(2006) Bioorg Med Chem Lett 16: 3121-3124

Released	2007-03-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase Chk1 (protein)
Unique Ligands	12C, SO4

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3TJP \| pdb_00003tjp	Download File View File

Crystal Structure of PI3K gamma with N6-(3,4-dimethoxyphenyl)-2-morpholino-[4,5'-bipyrimidine]-2',6-diamine

Knapp, M.S., Elling, R.A., Ornelas, E.

To be published

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma isoform (protein)
Unique Ligands	13K, SO4

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4CZS \| pdb_00004czs	Download File View File

Discovery of Glycomimetic Ligands via Genetically-encoded Library of Phage displaying Mannose-peptides

Ng, S., Lin, E., Tjhung, K.F., Gerlits, O., Sood, A., Kasper, B., Deng, L., Kitov, P.I., Matochko, W.L., Paschal, B.M., Noren, C.J., Klassen, J., Mahal, L.K., Coates, L., Woods, R.J., Derda, R.

(2015) J Am Chem Soc 137: 5248

Released	2015-04-22
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Canavalia cathartica synthetic construct
Macromolecule	Concanavalin V (protein) MAN-WYD (protein)
Unique Ligands	8LR, CA, MN

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4TOT \| pdb_00004tot	Download File View File

Crystal structure of rat cyclophilin D in complex with a potent nonimmunosuppressive inhibitor

Knapp, M.S., Elling, R.A.

(2014) J Med Chem 57: 8503-8516

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Rattus norvegicus synthetic construct
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein) nonimmunosuppressive inhibitor (protein)
Unique Ligands	P6G, SO4

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5U07 \| pdb_00005u07	Download File View File

CRISPR RNA-guided surveillance complex

Xiao, Y., Luo, M., Hayes, R.P., Kim, J., Ng, S., Ding, F., Liao, M., Ke, A.

(2017) Cell 170: 48-60.e11

Released	2017-08-09
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Thermobifida fusca YX
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 3

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5U0A \| pdb_00005u0a	Download File View File

CRISPR RNA-guided surveillance complex

Xiao, Y., Luo, M., Hayes, R.P., Kim, J., Ng, S., Ding, F., Liao, M., Ke, A.

(2017) Cell 170: 48-60.e11

Released	2017-08-09
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Thermobifida fusca YX
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 3

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5XVN \| pdb_00005xvn	Download File View File

E. far Cas1-Cas2/prespacer binary complex

Xiao, Y., Ng, S., Nam, K.H., Ke, A.

(2017) Nature 550: 137-141

Released	2017-10-04
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Enterococcus faecalis TX0027
Macromolecule	CRISPR-associated endonuclease Cas1 (protein) CRISPR-associated endoribonuclease Cas2 (protein) DNA (28-MER) (nucleic acid)
Unique Ligands	MG

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5XVO \| pdb_00005xvo	Download File View File

E. fae Cas1-Cas2/prespacer/target ternary complex revealing DNA sampling and half-integration states

Xiao, Y., Ng, S., Nam, K.H., Ke, A.

(2017) Nature 550: 137-141

Released	2017-10-04
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Enterococcus faecalis TX0027
Macromolecule	Unique protein chains: 2 Unique nucleic acid chains: 4
Unique Ligands	MG

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5XVP \| pdb_00005xvp	Download File View File

E. fae Cas1-Cas2/prespacer/target ternary complex revealing the fully integrated states

Xiao, Y., Ng, S., Nam, K.H., Ke, A.

(2017) Nature 550: 137-141

Released	2017-10-04
Method	X-RAY DIFFRACTION 3 Å
Organisms	Enterococcus faecalis TX0027
Macromolecule	CRISPR-associated endonuclease Cas1 (protein) CRISPR-associated endoribonuclease Cas2 (protein) DNA (5'-D(PTPTPCPTPCPCPGPAP*G)-3') (nucleic acid) DNA (73-MER) (nucleic acid)
Unique Ligands	MG

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6AAW \| pdb_00006aaw	Download File View File

Mdm2 in complex with a D amino Acid Containing Stapled Peptide

Brown, C.J., Partridge, A.W.

To be published

Released	2019-07-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Inovirus M13
Macromolecule	ACE-LEU-THR-PHE-STQ-GLU-TYR-DTR-GLN-LEU-CBA-MK8-SER-ALA-ALA (protein) E3 ubiquitin-protein ligase Mdm2 (protein)

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6KZU \| pdb_00006kzu	Download File View File

Macrocyclization of an all-D linear peptide improves target affinity and imparts cellular activity: A novel stapled alpha-helical peptide modality

Jiang, S., Brown, C.J.

(2020) Chem Sci 11: 5577-5591

Released	2019-10-16
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens Phage 13
Macromolecule	2JN-DAL-E03-DTY-2JN-DSG-TDF-DGL-MK8-DLE-DLE-2JN (protein) E3 ubiquitin-protein ligase Mdm2 (protein)

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7EZW \| pdb_00007ezw	Download File View File

Cyclic Peptide that Interacts with the eIF4E Capped-mRNA Binding Site

Brown, C.J., Ng, S., Frosi, Y.

(2022) RSC Chem Biol 3: 916-930

Released	2022-06-08
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ALA-CYS-GLU-MET-GLY-PHE-PHE-GLN-ASP-CYS-GLY (protein) Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	NA

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7F07 \| pdb_00007f07	Download File View File

Autonomous VH domain that interacts with eIF4E at the Capped mRNA Binding site.

Brown, C.J., Frosi, Y., Ng, S., Lin, Y.C.

(2022) RSC Chem Biol 3: 916-930

Released	2022-06-08
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Eukaryotic translation initiation factor 4E (protein) VH domain (VH-DiFCAP-01) (protein)

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7ROV \| pdb_00007rov	Download File View File

KRAS G12D Mutant in complex with GMPPCP and cyclic peptide MP-9903

Orth, P.

(2021) Chem Sci 12: 15975-15987

Released	2021-09-22
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Cyclic peptide MP-9903 (protein) Isoform 2B of GTPase KRas (protein)
Unique Ligands	GCP, GOL, MG

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1XG5 | pdb_00001xg5

1YB1 | pdb_00001yb1

1YSG | pdb_00001ysg

1YSI | pdb_00001ysi

1YSN | pdb_00001ysn

1YSW | pdb_00001ysw

1YSX | pdb_00001ysx

1YXM | pdb_00001yxm

1Z6Z | pdb_00001z6z

2BLE | pdb_00002ble

2BWG | pdb_00002bwg

2GDO | pdb_00002gdo

3TJP | pdb_00003tjp

4CZS | pdb_00004czs

4TOT | pdb_00004tot

5U07 | pdb_00005u07

5U0A | pdb_00005u0a

5XVN | pdb_00005xvn

5XVO | pdb_00005xvo

5XVP | pdb_00005xvp

6AAW | pdb_00006aaw

6KZU | pdb_00006kzu

7EZW | pdb_00007ezw

7F07 | pdb_00007f07

7ROV | pdb_00007rov