RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Nguyen, T."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 57 Structures.

Refinements

Structure Determination Methodology

experimental (57)

Scientific Name of Source Organism

	Homo sapiens (17)
	Salmonella enterica subsp. enterica serovar Typhi str. CT18 (9)
	Bos taurus (6)
	Trypanosoma rangeli (5)
	Mus musculus (4)
	Salmonella enterica subsp. enterica serovar Typhi (4)
	Human herpesvirus 5 strain 5508 (3)
	Human herpesvirus 5 strain AD169 (3)
	Human herpesvirus 5 strain Merlin (3)
	Trypanosoma cruzi (3)

More...

Taxonomy

	Eukaryota (39)
	Bacteria (19)
	Duplodnaviria (6)
	Riboviria (RNA viruses and viroids) (2)

Experimental Method

	X-RAY DIFFRACTION (52)
	ELECTRON MICROSCOPY (3)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (57)

Refinement Resolution (Å)

	1.5 - 2.0 (17)
	2.0 - 2.5 (16)
	2.5 - 3.0 (13)
	3.0 - 3.5 (5)
	3.5 - 4.0 (3)
	> 4.5 (1)

Release Date

	2000 - 2004 (10)
	2005 - 2009 (4)
	2010 - 2014 (8)
	2015 - 2019 (10)
	2020 - 2024 (25)

Enzyme Classification Name

	Hydrolases (22)
	Transferases (10)
	Oxidoreductases (1)

Membrane Protein Annotation

	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (33)
	Cyclic (22)
	Dihedral (1)
	Tetrahedral (2)

SCOP Classification

	All beta proteins (22)
	Artifacts (7)
	Alpha and beta proteins (a+b) (5)
	Alpha and beta proteins (a/b) (1)
	All alpha proteins (3)
	Membrane and cell surface proteins and peptides (1)
	Peptides (2)

AllSelected

1 to 25 of 57 Structures

Page 1 of 3

Sort by

Explore in 3D

1C4R \| pdb_00001c4r	Download File View File

THE STRUCTURE OF THE LIGAND-BINDING DOMAIN OF NEUREXIN 1BETA: REGULATION OF LNS DOMAIN FUNCTION BY ALTERNATIVE SPLICING

Rudenko, G., Nguyen, T., Chelliah, Y., Sudhof, T.C., Deisenhofer, J.

(1999) Cell 99: 93-101

Released	2000-10-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rattus norvegicus
Macromolecule	NEUREXIN-I BETA (protein)

Explore in 3D

1KWD \| pdb_00001kwd	Download File View File

SOLUTION STRUCTURE OF THE CENTRAL CONSERVED REGION OF HUMAN RESPIRATORY SYNCYTIAL VIRUS ATTACHMENT GLYCOPROTEIN G 187

Sugawara, M., Czaplicki, J., Ferrage, J., Haeuw, J.F., Power, U.F., Corvaia, N., Nguyen, T., Beck, A., Milon, A.

(2002) J Pept Res 60: 271-282

Released	2003-06-17
Method	SOLUTION NMR
Organisms	Human respiratory syncytial virus
Macromolecule	MAJOR SURFACE GLYCOPROTEIN G (protein)

Explore in 3D

1KWE \| pdb_00001kwe	Download File View File

SOLUTION STRUCTURE OF THE CENTRAL CONSERVED REGION OF HUMAN RESPIRATORY SYNCYTIAL VIRUS ATTACHMENT GLYCOPROTEIN G

Sugawara, M., Czaplicki, J., Ferrage, J., Haeuw, J.F., Power, U.F., Corvaia, N., Nguyen, T., Beck, A., Milon, A.

(2002) J Pept Res 60: 271-282

Released	2003-06-17
Method	SOLUTION NMR
Organisms	Human respiratory syncytial virus
Macromolecule	MAJOR SURFACE GLYCOPROTEIN G (protein)

Explore in 3D

1N1S \| pdb_00001n1s	Download File View File

Trypanosoma rangeli sialidase

Amaya, M.F., Buschiazzo, A., Nguyen, T., Alzari, P.M.

(2003) J Mol Biology 325: 773-784

Released	2003-01-07
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Trypanosoma rangeli
Macromolecule	Sialidase (protein)
Unique Ligands	SO4

Explore in 3D

1N1T \| pdb_00001n1t	Download File View File

Trypanosoma rangeli sialidase in complex with DANA at 1.6 A

Amaya, M.F., Buschiazzo, A., Nguyen, T., Alzari, P.M.

(2003) J Mol Biology 325: 773-784

Released	2003-01-07
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Trypanosoma rangeli
Macromolecule	Sialidase (protein)
Unique Ligands	DAN, SO4

Explore in 3D

1N1V \| pdb_00001n1v	Download File View File

Trypanosoma rangeli sialidase in complex with DANA

Amaya, M.F., Buschiazzo, A., Nguyen, T., Alzari, P.M.

(2003) J Mol Biology 325: 773-784

Released	2003-01-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Trypanosoma rangeli
Macromolecule	Sialidase (protein)
Unique Ligands	DAN, SO4

Explore in 3D

1N1Y \| pdb_00001n1y	Download File View File

Trypanosoma rangeli sialidase in complex with sialic acid

Amaya, M.F., Buschiazzo, A., Nguyen, T., Alzari, P.M.

(2003) J Mol Biology 325: 773-784

Released	2003-01-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Trypanosoma rangeli
Macromolecule	Sialidase (protein)
Unique Ligands	SIA

Explore in 3D

1S0I \| pdb_00001s0i	Download File View File

Trypanosoma cruzi trans-sialidase in complex with sialyl-lactose (Michaelis complex)

Amaya, M.F., Watts, A.G., Damager, I., Wehenkel, A., Nguyen, T., Buschiazzo, A., Paris, G., Frasch, A.C., Withers, S.G., Alzari, P.M.

(2004) Structure 12: 775-784

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Trypanosoma cruzi
Macromolecule	trans-sialidase (protein)
Unique branched monosaccharides	GAL, GLC, SIA

Explore in 3D

1S0J \| pdb_00001s0j	Download File View File

Trypanosoma cruzi trans-sialidase in complex with MuNANA (Michaelis complex)

Amaya, M.F., Watts, A.G., Damager, I., Wehenkel, A., Nguyen, T., Buschiazzo, A., Paris, G., Frasch, A.C., Withers, S.G., Alzari, P.M.

(2004) Structure 12: 775-784

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Trypanosoma cruzi
Macromolecule	trans-sialidase (protein)
Unique Ligands	MUS

Explore in 3D

1WCS \| pdb_00001wcs	Download File View File

A mutant of Trypanosoma rangeli sialidase displaying trans-sialidase activity

Paris, G., Ratier, L., Amaya, M.F., Nguyen, T., Alzari, P.M., Frasch, C.

(2005) J Mol Biology 345: 923

Released	2004-12-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Trypanosoma rangeli
Macromolecule	SIALIDASE (protein)

Explore in 3D

1YY6 \| pdb_00001yy6	Download File View File

The Crystal Structure of the N-terminal domain of HAUSP/USP7 complexed with an EBNA1 peptide

Saridakis, V., Sheng, Y., Sarkari, F., Holowaty, M., Shire, K., Nguyen, T., Zhang, R., Liao, J., Lee, W., Edwards, A.M., Arrowsmith, C.H., Frappier, L.

(2005) Mol Cell 18: 25-36

Released	2005-04-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Epstein-Barr virus (strain B95-8) Homo sapiens
Macromolecule	Epstein-Barr nuclear antigen-1 (protein) Ubiquitin carboxyl-terminal hydrolase 7 (protein)
Unique Ligands	NA

Explore in 3D

1YZE \| pdb_00001yze	Download File View File

Crystal structure of the N-terminal domain of USP7/HAUSP.

Saridakis, V., Sheng, Y., Sarkari, F., Holowaty, M.N., Shire, K., Nguyen, T., Zhang, R.G., Liao, J., Lee, W., Edwards, A.M., Arrowsmith, C.H., Frappier, L.

(2005) Mol Cell 18: 25-36

Released	2005-04-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 7 (protein)

Explore in 3D

2AH2 \| pdb_00002ah2	Download File View File

Trypanosoma cruzi trans-sialidase in complex with 2,3-difluorosialic acid (covalent intermediate)

Amaya, M.F., Watts, A.G., Damager, I., Wehenkel, A., Nguyen, T., Buschiazzo, A., Paris, G., Frasch, A.C., Withers, S.G., Alzari, P.M.

(2004) Structure 12: 775-784

Released	2005-08-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Trypanosoma cruzi
Macromolecule	trans-sialidase (protein)
Unique Ligands	CL, FSI, GOL, IPA

Explore in 3D

2GFP \| pdb_00002gfp	Download File View File

Structure of the Multidrug Transporter EmrD from Escherichia coli

Yin, Y., He, X., Szewczyk, P., Nguyen, T., Chang, G.

(2006) Science 312: 741-744

Released	2006-05-16
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia coli
Macromolecule	Multidrug resistance protein D (protein)

Explore in 3D

3MJW \| pdb_00003mjw	Download File View File

PI3 Kinase gamma with a benzofuranone inhibitor

Bard, J., Svenson, K.

(2010) Bioorg Med Chem Lett 20: 3526-3529

Released	2010-06-09
Method	X-RAY DIFFRACTION 2.87 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma isoform (protein)
Unique Ligands	WYF

Explore in 3D

3NAX \| pdb_00003nax	Download File View File

PDK1 in complex with inhibitor MP7

Yan, Y., Munshi, S.K., Allison, T.

(2011) J Biological Chem 286: 6433-6448

Released	2010-11-24
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	3-phosphoinositide-dependent protein kinase 1 (protein)
Unique Ligands	MP7

Explore in 3D

3NAY \| pdb_00003nay	Download File View File

PDK1 in complex with inhibitor MP6

Yan, Y., Munshi, S.K., Allison, T.

(2010) J Biological Chem

Released	2010-11-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	3-phosphoinositide-dependent protein kinase 1 (protein)
Unique Ligands	MP6

Explore in 3D

4DUS \| pdb_00004dus	Download File View File

Structure of Bace-1 (Beta-Secretase) in complex with N-((2S,3R)-1-(4-fluorophenyl)-3-hydroxy-4-((6'-neopentyl-3',4'-dihydrospiro[cyclobutane-1,2'-pyrano[2,3-b]pyridin]-4'-yl)amino)butan-2-yl)acetamide

Sickmier, E.A.

(2012) ACS Med Chem Lett 3: 886-891

Released	2012-10-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	0MP, GOL, IOD

Explore in 3D

4FS4 \| pdb_00004fs4	Download File View File

Structure of BACE Bound to (S)-4-(3'-methoxy-[1,1'-biphenyl]-3-yl)-1,4-dimethyl-6-oxotetrahydropyrimidin-2(1H)-iminium

Strickland, C., Stamford, A.

(2012) ACS Med Chem Lett 3: 886-891

Released	2012-10-10
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	H24, TLA

Explore in 3D

4KG9 \| pdb_00004kg9	Download File View File

Crystal Structure Of USP7-NTD with MCM-BP

Saridakis, V., Luthra, N.

(2014) Mol Cell Biol 34: 132-145

Released	2013-11-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Mini-chromosome maintenance complex-binding protein (protein) Ubiquitin carboxyl-terminal hydrolase 7 (protein)

Explore in 3D

4QYJ \| pdb_00004qyj	Download File View File

Structure of Phenylacetaldehyde Dehydrogenase from Pseudomonas putida S12

Crabo, A.G., Gassner, G.T., Sazinsky, M.H.

(2017) Arch Biochem Biophys 616: 47-58

Released	2015-08-19
Method	X-RAY DIFFRACTION 2.83 Å
Organisms	Pseudomonas putida S12
Macromolecule	Aldehyde dehydrogenase (protein)

Explore in 3D

4TPM \| pdb_00004tpm	Download File View File

Crystal structure of 2-(3-alkoxy-1-azetidinyl) quinolines as PDE10A Inhibitors

Chmait, S.

(2014) Bioorg Med Chem 22: 6570-6585

Released	2014-12-17
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Homo sapiens
Macromolecule	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A (protein)
Unique Ligands	35E, GOL, SO4, ZN

Explore in 3D

4TPP \| pdb_00004tpp	Download File View File

2-(3-alkoxy-1-azetidinyl) quinolines as novel PDE10A inhibitors

Chmait, S.

(2014) Bioorg Med Chem 22: 6570-6585

Released	2014-12-17
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A (protein)
Unique Ligands	35D, GOL, SO4, ZN

Explore in 3D

4WNM \| pdb_00004wnm	Download File View File

SYK catalytic domain in complex with a potent triazolopyridine inhibitor

Jackson, P.J.

(2016) PLoS One 11: e0145705-e0145705

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase SYK (protein)
Unique Ligands	3RT, SO4

Explore in 3D

4XHJ \| pdb_00004xhj	Download File View File

gHgL of Varicella-zoster virus in complex with human neutralizing antibodies.

Xing, Y.

(2015) Proc Natl Acad Sci U S A 112: 6056-6061

Released	2015-05-13
Method	X-RAY DIFFRACTION 3.156 Å
Organisms	Homo sapiens Human herpesvirus 3 strain Oka vaccine
Macromolecule	Envelope glycoprotein H (protein) Envelope glycoprotein L (protein) Fab-RC heavy chain (protein) Fab-RC light chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

1 to 25 of 57 Structures

Page 1 of 3

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1C4R | pdb_00001c4r

1KWD | pdb_00001kwd

1KWE | pdb_00001kwe

1N1S | pdb_00001n1s

1N1T | pdb_00001n1t

1N1V | pdb_00001n1v

1N1Y | pdb_00001n1y

1S0I | pdb_00001s0i

1S0J | pdb_00001s0j

1WCS | pdb_00001wcs

1YY6 | pdb_00001yy6

1YZE | pdb_00001yze

2AH2 | pdb_00002ah2

2GFP | pdb_00002gfp

3MJW | pdb_00003mjw

3NAX | pdb_00003nax

3NAY | pdb_00003nay

4DUS | pdb_00004dus

4FS4 | pdb_00004fs4

4KG9 | pdb_00004kg9

4QYJ | pdb_00004qyj

4TPM | pdb_00004tpm

4TPP | pdb_00004tpp

4WNM | pdb_00004wnm

4XHJ | pdb_00004xhj