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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Park, S.Y."

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Search Summary

This query matches 287 Structures.

Refinements

Structure Determination Methodology

experimental (287)

Scientific Name of Source Organism

	Homo sapiens (86)
	Mus musculus (22)
	Nonlabens marinus S1-08 (19)
	Arabidopsis thaliana (16)
	Fusarium oxysporum (12)
	Escherichia coli (9)
	Thermotoga maritima (7)
	Thermus thermophilus (7)
	Gallus gallus (6)
	Geobacillus stearothermophilus (6)

More...

Taxonomy

	Eukaryota (168)
	Bacteria (99)
	Archaea (10)
	Riboviria (9)
	other sequences (6)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (267)
	ELECTRON MICROSCOPY (14)
	SOLUTION NMR (4)
	NEUTRON DIFFRACTION (2)

Polymer Entity Type

	Protein (286)
	DNA (7)
	RNA (4)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (32)
	1.5 - 2.0 (118)
	2.0 - 2.5 (62)
	2.5 - 3.0 (40)
	3.0 - 3.5 (24)
	3.5 - 4.0 (4)
	4.0 - 4.5 (2)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (45)
	2005 - 2009 (37)
	2010 - 2014 (51)
	2015 - 2019 (50)
	2020 - 2024 (98)

Enzyme Classification Name

	Hydrolases (53)
	Oxidoreductases (32)
	Transferases (14)
	Lyases (9)
	Ligases (10)
	Isomerases (2)

Membrane Protein Annotation

	PDBTM (36)
	mpstruc (30)
	MemProtMD (27)
	OPM (6)

Symmetry Type

	Asymmetric (165)
	Cyclic (119)
	Dihedral (8)

SCOP Classification

	All alpha proteins (80)
	Alpha and beta proteins (a+b) (34)
	All beta proteins (18)
	Alpha and beta proteins (a/b) (19)
	Membrane and cell surface proteins and peptides (23)
	Artifacts (10)
	Coiled coil proteins (6)
	Multi-domain proteins (alpha and beta) (3)

AllSelected

1 to 25 of 287 Structures

Page 1 of 12

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1CG5 \| pdb_00001cg5	Download File View File

DEOXY FORM HEMOGLOBIN FROM DASYATIS AKAJEI

Chong, K.T., Morimoto, H.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1291-1300

Released	1999-04-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Hemitrygon akajei
Macromolecule	PROTEIN (HEMOGLOBIN) (protein)
Unique Ligands	HEM

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1CG8 \| pdb_00001cg8	Download File View File

CO Form Hemoglobin from Dasyatis Akajei

Chong, K.T., Morimoto, H.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1291-1300

Released	1999-04-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Hemitrygon akajei
Macromolecule	PROTEIN (HEMOGLOBIN) (protein)
Unique Ligands	CMO, HEM

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1CL6 \| pdb_00001cl6	Download File View File

CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND ITS SER286 MUTANTS AT CRYOGENIC TEMPERATURE

Park, S.-Y., Shiro, Y.

(2000) J Biological Chem 275: 4816-4826

Released	2000-03-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450 (protein)
Unique Ligands	HEM, NO

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1CMJ \| pdb_00001cmj	Download File View File

CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE

Park, S.-Y., Shiro, Y.

(2000) J Biological Chem 275: 4816-4826

Released	2000-03-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450 (protein)
Unique Ligands	HEM, NO

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1CMN \| pdb_00001cmn	Download File View File

CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE

Park, S.-Y., Shiro, Y.

(2000) J Biological Chem 275: 4816-4826

Released	2000-03-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450 (protein)
Unique Ligands	HEM, NO

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1F24 \| pdb_00001f24	Download File View File

CRYSTAL STRUCTURE OF NO COMPLEX OF THR243ALA MUTANTS OF CYTOCHROME P450NOR

Shimizu, H., Park, S.-Y.

(2000) J Inorg Biochem 82: 103-111

Released	2000-11-23
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Fusarium oxysporum
Macromolecule	NITRIC OXIDE REDUCTASE (protein)
Unique Ligands	GOL, HEM, NO

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1F25 \| pdb_00001f25	Download File View File

CRYSTAL STRUCTURE OF NO COMPLEX OF THR243ASN MUTANTS OF CYTOCHROME P450NOR

Shimizu, H., Park, S.-Y.

(2000) J Inorg Biochem 82: 103-111

Released	2000-11-23
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Fusarium oxysporum
Macromolecule	NITRIC OXIDE REDUCTASE (protein)
Unique Ligands	GOL, HEM, NO

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1F26 \| pdb_00001f26	Download File View File

CRYSTAL STRUCTURE OF NO COMPLEX OF THR243VAL MUTANTS OF CYTOCHROME P450NOR

Shimizu, H., Park, S.-Y.

(2000) J Inorg Biochem 82: 103-111

Released	2000-11-23
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Fusarium oxysporum
Macromolecule	NITRIC OXIDE REDUCTASE (protein)
Unique Ligands	GOL, HEM, NO

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1GCU \| pdb_00001gcu	Download File View File

CRYSTAL STRUCTURE OF RAT BILIVERDIN REDUCTASE AT 1.4 A

Kikuchi, A., Park, S.Y., Shiro, Y.

(2001) Nat Struct Biol 8: 221-225

Released	2001-02-08
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Rattus norvegicus
Macromolecule	BILIVERDIN REDUCTASE A (protein)

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1GCV \| pdb_00001gcv	Download File View File

DEOXY FORM HEMOGLOBIN FROM MUSTELUS GRISEUS

Naoi, Y., Chong, K.T., Yoshimatsu, K., Miyazaki, G., Tame, J.R.H., Park, S.Y., Adachi, S.I., Morimoto, H.

(2001) J Mol Biology 307: 259-270

Released	2000-08-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mustelus griseus
Macromolecule	HEMOGLOBIN (protein)
Unique Ligands	HEM

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1GCW \| pdb_00001gcw	Download File View File

CO form hemoglobin from mustelus griseus

Naoi, Y., Chong, K.T., Yoshimatsu, K., Miyazaki, G., Tame, J.R.H., Park, S.Y., Adachi, S.I., Morimoto, H.

(2001) J Mol Biology 307: 259-270

Released	2000-09-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mustelus griseus
Macromolecule	PROTEIN (HEMOGLOBIN) (protein)
Unique Ligands	CMO, HEM

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1GDV \| pdb_00001gdv	Download File View File

CRYSTAL STRUCTURE OF CYTOCHROME C6 FROM RED ALGA PORPHYRA YEZOENSIS AT 1.57 A RESOLUTION

Yamada, S., Park, S.-Y., Shimizu, H., Shiro, Y., Oku, T.

(2000) Acta Crystallogr D Biol Crystallogr 56: 1577-1582

Released	2001-04-06
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Pyropia yezoensis
Macromolecule	CYTOCHROME C6 (protein)
Unique Ligands	HEC

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1GEB \| pdb_00001geb	Download File View File

X-RAY CRYSTAL STRUCTURE AND CATALYTIC PROPERTIES OF THR252ILE MUTANT OF CYTOCHROME P450CAM

Hishiki, T., Shimada, H., Nagano, S., Park, S.-Y., Ishimura, Y.

(2000) J Biochem 128: 965-974

Released	2000-11-15
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Pseudomonas putida
Macromolecule	CYTOCHROME P450-CAM (protein)
Unique Ligands	CAM, HEM

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1GEI \| pdb_00001gei	Download File View File

STRUCTURAL CHARACTERIZATION OF N-BUTYL-ISOCYANIDE COMPLEXES OF CYTOCHROMES P450NOR AND P450CAM

Lee, D.-S., Park, S.-Y., Yamane, K., Shiro, Y.

(2001) Biochemistry 40: 2669-2677

Released	2000-11-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450 55A1 (protein)
Unique Ligands	HEM, NBN

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1GEJ \| pdb_00001gej	Download File View File

STRUCTURAL CHARACTERIZATION OF N-BUTYL-ISOCYANIDE COMPLEXES OF CYTOCHROMES P450NOR AND P450CAM

lee, D.-S., Park, S.-Y., Yamane, K., Shiro, Y.

(2001) Biochemistry 40: 2669-2677

Released	2000-12-06
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450 55A1 (protein)
Unique Ligands	HEM, NBN

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1GEK \| pdb_00001gek	Download File View File

STRUCTURAL CHARACTERIZATION OF N-BUTYL-ISOCYANIDE COMPLEXES OF CYTOCHROMES P450NOR AND P450CAM

Lee, D.-S., Park, S.-Y., Yamane, K., Shiro, Y.

(2001) Biochemistry 40: 2669-2677

Released	2000-12-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudomonas putida
Macromolecule	CYTOCHROME P450CAM (protein)
Unique Ligands	HEM, NBN

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1GEM \| pdb_00001gem	Download File View File

STRUCTURAL CHARACTERIZATION OF N-BUTYL-ISOCYANIDE COMPLEXES OF CYTOCHROMES P450NOR AND P450CAM

Lee, D.-S., Park, S.-Y., Yamane, K., Shiro, Y.

(2001) Biochemistry 40: 2669-2677

Released	2000-12-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas putida
Macromolecule	CYTOCHROME P450CAM (protein)
Unique Ligands	HEM, NBN

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1GUU \| pdb_00001guu	Download File View File

CRYSTAL STRUCTURE OF C-MYB R1

Tahirov, T.H., Ogata, K.

To be published

Released	2003-06-26
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	MYB PROTO-ONCOGENE PROTEIN (protein)
Unique Ligands	NA

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1GV2 \| pdb_00001gv2	Download File View File

CRYSTAL STRUCTURE OF C-MYB R2R3

Tahirov, T.H., Ogata, K.

To be published

Released	2003-07-03
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Mus musculus
Macromolecule	MYB PROTO-ONCOGENE PROTEIN (protein)
Unique Ligands	NA

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1GV5 \| pdb_00001gv5	Download File View File

CRYSTAL STRUCTURE OF C-MYB R2

Tahirov, T.H., Ogata, K.

To be published

Released	2003-07-03
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Mus musculus
Macromolecule	MYB PROTO-ONCOGENE PROTEIN (protein)
Unique Ligands	NA

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1GVD \| pdb_00001gvd	Download File View File

CRYSTAL STRUCTURE OF C-MYB R2 V103L MUTANT

Tahirov, T.H., Ogata, K.

To be published

Released	2003-07-03
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Mus musculus
Macromolecule	MYB PROTO-ONCOGENE PROTEIN (protein)
Unique Ligands	NH4, SO4

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1H88 \| pdb_00001h88	Download File View File

CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1

Tahirov, T.H., Ogata, K.

(2002) Cell 108: 57

Released	2002-01-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	CCAAT/ENHANCER BINDING PROTEIN BETA (protein) MYB PROTO-ONCOGENE PROTEIN (protein) DNA(5'-(CPCPAPGPTPCPCPGPTPTPAP APGPGPAPTPTPGPCPGPCPCPAPCPAPT)-3') (nucleic acid) DNA(5'-(GPAPTPGPTPGPGPCPGPCPAP APTPCPCPTPTPAPAPCPGPGPAPCPTPG)-3') (nucleic acid)
Unique Ligands	NH4

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1H89 \| pdb_00001h89	Download File View File

CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2

Tahirov, T.H., Ogata, K.

(2002) Cell 108: 57

Released	2002-01-28
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	CAAT/ENHANCER BINDING PROTEIN BETA (protein) MYB PROTO-ONCOGENE PROTEIN (protein) DNA(5'-(CPCPAPGPTPCPCPGPTPTPAP APGPGPAPTPTPGPCPGPCPCPAPCPAPT)-3') (nucleic acid) DNA(5'-(GPAPTPGPTPGPGPCPGPCPAP APTPCPCPTPTPAPAPCPGPGPAPCPTPG)-3') (nucleic acid)
Unique Ligands	K

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1H8A \| pdb_00001h8a	Download File View File

CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3

Tahirov, T.H., Ogata, K.

(2002) Cell 108: 57

Released	2002-01-28
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Avian myeloblastosis virus Homo sapiens
Macromolecule	CAAT/ENHANCER BINDING PROTEIN BETA (protein) MYB TRANSFORMING PROTEIN (protein) DNA(5'-(CPCPAPGPTPCPCPGPTPTPAP APGPGPAPTPTPGPCPGPCPCPAPCPAPT)-3') (nucleic acid) DNA(5'-(GPAPTPGPTPGPGPCPGPCPAP APTPCPCPTPTPAPAPCPGPGPAPCPTPG)-3') (nucleic acid)