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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Peterson, A."

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Homo sapiens (13)
	synthetic construct (5)
	Mus musculus (4)

Taxonomy

	Eukaryota (13)
	other sequences (5)

Experimental Method

X-RAY DIFFRACTION (13)

Polymer Entity Type

Protein (13)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (9)
	2.5 - 3.0 (2)
	3.5 - 4.0 (1)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (10)
	2020 - 2024 (2)

Enzyme Classification Name

Hydrolases (10)

Symmetry Type

	Asymmetric (12)
	Cyclic (1)

SCOP Classification

All beta proteins (1)

AllSelected

1 to 13 of 13 Structures

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4NMX \| pdb_00004nmx	Download File View File

PCSK9(deltaCRD) in complex with phage-derived inhibitory peptide 2-8

Eigenbrot, C., Shia, S.

(2014) J Biological Chem 289: 942-955

Released	2013-12-04
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Proprotein convertase subtilisin/kexin type 9 (protein) peptide 2-8 (protein)

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5VL7 \| pdb_00005vl7	Download File View File

PCSK9 complex with Fab33

Eigenbrot, C., Shia, S.

(2017) Nat Struct Mol Biol 24: 848-856

Released	2017-08-16
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens
Macromolecule	Fab33 heavy chain (protein) Fab33 light chain (protein) Proprotein convertase subtilisin/kexin type 9 (protein)

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5VLA \| pdb_00005vla	Download File View File

Short PCSK9 delta-P' complex with Fusion2 peptide

Eigenbrot, C., Ultsch, M.

(2017) Nat Struct Mol Biol 24: 848-856

Released	2017-08-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Proprotein convertase subtilisin/kexin type 9 (protein) THR-VAL-PHE-THR-SER-TRP-GLU-GLU-TYR-LEU-ASP-TRP-VAL-MET-PRO-TRP-ASN-LEU-VAL-ARG-ILE-GLY-LEU-LEU (protein)
Unique Ligands	CA

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5VLH \| pdb_00005vlh	Download File View File

Short PCSK9 delta-P' complex with peptide Pep1

Eigenbrot, C., Ultsch, M.

(2017) Nat Struct Mol Biol 24: 848-856

Released	2017-08-16
Method	X-RAY DIFFRACTION 2.86 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ACE-THR-VAL-PHE-THR-SER-TRP-GLU-GLU-TYR-LEU-ASP-TRP-VAL-NH2 (protein) CYS-ARG-LEU-PRO-TRP-ASN-LEU-GLN-ARG-ILE-GLY-LEU-PRO-CYS (protein) Proprotein convertase subtilisin/kexin type 9 (protein)
Unique Ligands	CA

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5VLK \| pdb_00005vlk	Download File View File

Short PCSK9 delta-P' complex with shrunken peptide bearing homo-Arginine

Eigenbrot, C., Ultsch, M.

(2017) Nat Struct Mol Biol 24: 848-856

Released	2017-08-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ACE-THR-VAL-PHE-THR-SER-TRP-GLU-GLU-TYR-LEU-ASP-TRP-VAL-NH2 peptide (protein) ACE-TRP-ASN-LEU-VAL-HRG-ILE-GLY-LEU-LEU peptide (protein) Proprotein convertase subtilisin/kexin type 9 (protein)
Unique Ligands	CA

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5VLL \| pdb_00005vll	Download File View File

Short PCSK9 delta-P' complex with peptide Pep3

Eigenbrot, C., Ultsch, M.

(2017) Nat Struct Mol Biol 24: 848-856

Released	2017-08-16
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ACE-THR-VAL-PHE-THR-SER-TRP-GLU-GLU-TYR-LEU-ASP-TRP-VAL-NH2 (protein) CYS-PHE-ILE-PRO-TRP-ASN-LEU-GLN-ARG-ILE-GLY-LEU-LEU-CYS (protein) Proprotein convertase subtilisin/kexin type 9 (protein)
Unique Ligands	CA

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5VLP \| pdb_00005vlp	Download File View File

PCSK9 complex with LDLR antagonist peptide and Fab7G7

Eigenbrot, C., Ultsch, M.

(2017) Nat Struct Mol Biol 24: 848-856

Released	2017-08-16
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Fab7G7 heavy chain (protein) Fab7G7 light chain (protein) LDLR antagonist peptide (protein) Proprotein convertase subtilisin/kexin type 9 (protein)
Unique Ligands	NA

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6E4Y \| pdb_00006e4y	Download File View File

Anti-PCSK9 fab 6E2 bound to the N-terminal peptide from PCSK9, unmodified

Ultsch, M.H., Kirchhofer, D.K.

(2019) J Mol Biology 431: 885-903

Released	2019-04-10
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	6E2 heavy chain (protein) 6E2 light chain (protein) Proprotein convertase subtilisin/kexin type 9 (protein)
Unique Ligands	CL, ZN

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6E4Z \| pdb_00006e4z	Download File View File

Anti-PCSK9 fab 6E2 bound to the modified N-terminal peptide from PCSK9

Ultsch, M.H., Kirchhofer, D.K.

(2019) J Mol Biology 431: 885-903

Released	2019-04-10
Method	X-RAY DIFFRACTION 2.202 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	6E2 heavy chain (protein) 6E2 light chain (protein) Proprotein convertase subtilisin/kexin type 9 (protein)
Unique Ligands	SO4, ZN

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6F83 \| pdb_00006f83	Download File View File

Crystal Structure of Human Galectin-1 in Complex With Thienyl-1,2, 3-triazolyl Thiodigalactoside Inhibitor

Collins, P.M., Blanchard, H.

To be published

Released	2019-01-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Galectin-1 (protein)
Unique Ligands	5KT

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6MV5 \| pdb_00006mv5	Download File View File

Anti-PCSK9 fab 6E2 bound to the N-terminal peptide from PCSK9 (E32K)

Ultsch, M.H., Kirchhofer, D.K.

(2019) J Mol Biology 431: 885-903

Released	2019-04-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Anti-PCSK9 fab 6E2 heavy chain (protein) Anti-PCSK9 fab 6E2 light chain (protein) Proprotein convertase subtilisin/kexin type 9 (protein)
Unique Ligands	CL, SO4, ZN

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8UYN \| pdb_00008uyn	Download File View File

Fundamental Characterization of Chelated and Crystallized Actinium in a Macromolecular Host

Rupert, P.B., Strong, R.K.

(2024) Nat Commun 15: 5741-5741

Released	2024-09-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil gelatinase-associated lipocalin (protein)
Unique Ligands	4OL, LA, PIN, SO4

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8UZ9 \| pdb_00008uz9	Download File View File

Fundamental Characterization of Chelated and Crystallized Actinium in a Macromolecular Host

Rupert, P.B., Strong, R.K.

(2024) Nat Commun 15: 5741-5741

Released	2024-09-25
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil gelatinase-associated lipocalin (protein)
Unique Ligands	4OL, CL, SO4, ZTM

1 to 13 of 13 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4NMX | pdb_00004nmx

PCSK9(deltaCRD) in complex with phage-derived inhibitory peptide 2-8

5VL7 | pdb_00005vl7

PCSK9 complex with Fab33

5VLA | pdb_00005vla

Short PCSK9 delta-P' complex with Fusion2 peptide

5VLH | pdb_00005vlh

Short PCSK9 delta-P' complex with peptide Pep1

5VLK | pdb_00005vlk

Short PCSK9 delta-P' complex with shrunken peptide bearing homo-Arginine

5VLL | pdb_00005vll

Short PCSK9 delta-P' complex with peptide Pep3

5VLP | pdb_00005vlp

PCSK9 complex with LDLR antagonist peptide and Fab7G7

6E4Y | pdb_00006e4y

Anti-PCSK9 fab 6E2 bound to the N-terminal peptide from PCSK9, unmodified

6E4Z | pdb_00006e4z

Anti-PCSK9 fab 6E2 bound to the modified N-terminal peptide from PCSK9

6F83 | pdb_00006f83

Crystal Structure of Human Galectin-1 in Complex With Thienyl-1,2, 3-triazolyl Thiodigalactoside Inhibitor

6MV5 | pdb_00006mv5

Anti-PCSK9 fab 6E2 bound to the N-terminal peptide from PCSK9 (E32K)

8UYN | pdb_00008uyn

Fundamental Characterization of Chelated and Crystallized Actinium in a Macromolecular Host

8UZ9 | pdb_00008uz9

Fundamental Characterization of Chelated and Crystallized Actinium in a Macromolecular Host

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4NMX | pdb_00004nmx

5VL7 | pdb_00005vl7

5VLA | pdb_00005vla

5VLH | pdb_00005vlh

5VLK | pdb_00005vlk

5VLL | pdb_00005vll

5VLP | pdb_00005vlp

6E4Y | pdb_00006e4y

6E4Z | pdb_00006e4z

6F83 | pdb_00006f83

6MV5 | pdb_00006mv5

8UYN | pdb_00008uyn

8UZ9 | pdb_00008uz9