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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Prates, E.T."

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Search Summary

This query matches 30 Structures.

Refinements

Structure Determination Methodology

experimental (30)

Scientific Name of Source Organism

	Amycolatopsis mediterranei (7)
	Lentinula edodes (5)
	Aureobasidium namibiae CBS 147.97 (3)
	Blastomyces gilchristii (3)
	Bacillus licheniformis (2)
	Cryptococcus neoformans (2)
	Pseudomonas viridiflava (2)
	Blastomyces gilchristii SLH14081 (1)
	Pseudomonas putida KT2440 (1)
	Rhodothermus marinus (1)

More...

Taxonomy

	Eukaryota (16)
	Bacteria (14)

Experimental Method

X-RAY DIFFRACTION (30)

Polymer Entity Type

Protein (30)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (20)
	2.0 - 2.5 (3)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (2)
	2020 - 2024 (26)

Enzyme Classification Name

Hydrolases (3)

Symmetry Type

	Asymmetric (29)
	Cyclic (1)

SCOP Classification

	All beta proteins (2)
	Artifacts (1)

AllSelected

1 to 25 of 30 Structures

Page 1 of 2

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3ILN	Download File View File

X-ray structure of the laminarinase from Rhodothermus marinus

Bleicher, L., Golubev, A., Rojas, A.L., Nascimento, A.S., Polikarpov, I.

(2011) J Phys Chem B 115: 7940-7949

Released	2010-08-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Rhodothermus marinus
Macromolecule	Laminarinase (protein)
Unique Ligands	CA, GOL

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4H7M	Download File View File

The X-ray Crystal Structure of the Trichoderma harzianum Endoglucanase 3 from family GH12

Liberato, M.V., Polikarpov, I.

(2013) PLoS One 8: e59069-e59069

Released	2013-04-03
Method	X-RAY DIFFRACTION 2.068 Å
Organisms	Trichoderma harzianum
Macromolecule	Endo-1,4-beta-glucanase (protein)

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4YZP	Download File View File

Crystal structure of a tri-modular GH5 (subfamily 4) endo-beta-1, 4-glucanase from Bacillus licheniformis

Liberato, M.V., Popov, A., Polikarpov, I.

(2016) Sci Rep 6: 23473-23473

Released	2016-09-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus licheniformis
Macromolecule	Cellulose hydrolase (protein)

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4YZT	Download File View File

Crystal structure of a tri-modular GH5 (subfamily 4) endo-beta-1, 4-glucanase from Bacillus licheniformis complexed with cellotetraose

Liberato, M.V., Popov, A., Polikarpov, I.

(2016) Sci Rep 6: 23473-23473

Released	2016-09-07
Method	X-RAY DIFFRACTION 1.665 Å
Organisms	Bacillus licheniformis
Macromolecule	Cellulose hydrolase (protein)
Unique Ligands	EDO
Unique branched monosaccharides	BGC

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6UAQ	Download File View File

Crystal structure of a GH128 (subgroup I) endo-beta-1,3-glucanase from Amycolatopsis mediterranei (AmGH128_I)

Costa, P.A.C.R., Santos, C.R., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Amycolatopsis mediterranei
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique Ligands	GOL, NA

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6UAR	Download File View File

Crystal structure of a GH128 (subgroup I) endo-beta-1,3-glucanase from Amycolatopsis mediterranei (AmGH128_I) in complex with laminaritriose

Costa, P.A.C.R., Santos, C.R., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Amycolatopsis mediterranei
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique branched monosaccharides	BGC

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6UAS	Download File View File

Crystal structure of a GH128 (subgroup I) endo-beta-1,3-glucanase (E199A mutant) from Amycolatopsis mediterranei (AmGH128_I) in complex with laminaripentaose

Vieira, P.S., Cabral, L., Costa, P.A.C.R., Santos, C.R., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Amycolatopsis mediterranei
Macromolecule	Glycoside Hydrolase (protein)
Unique Ligands	BGC, PEG, ZN
Unique branched monosaccharides	BGC, GLC

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6UAT	Download File View File

Crystal structure of a GH128 (subgroup I) endo-beta-1,3-glucanase (E102A mutant) from Amycolatopsis mediterranei (AmGH128_I) in complex with laminaripentaose

Vieira, P.S., Cabral, L., Costa, P.A.C.R., Santos, C.R., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Amycolatopsis mediterranei
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique Ligands	ZN
Unique branched monosaccharides	BGC

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6UAU	Download File View File

Crystal structure of a GH128 (subgroup I) endo-beta-1,3-glucanase (E102A mutant) from Amycolatopsis mediterranei (AmGH128_I) in complex with laminaritriose and laminaribiose

Vieira, P.S., Cabral, L., Costa, P.A.C.R., Santos, C.R., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Amycolatopsis mediterranei
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique Ligands	PEG, ZN
Unique branched monosaccharides	BGC

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6UAV	Download File View File

Crystal structure of a GH128 (subgroup II) endo-beta-1,3-glucanase from Pseudomonas viridiflava (PvGH128_II)

Santos, C.R., Costa, P.A.C.R., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pseudomonas viridiflava
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique Ligands	GOL, SO4

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6UAW	Download File View File

Crystal structure of a GH128 (subgroup II) endo-beta-1,3-glucanase from Pseudomonas viridiflava (PvGH128_II) in complex with laminaritriose

Santos, C.R., Costa, P.A.C.R., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pseudomonas viridiflava
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique Ligands	SO4
Unique branched monosaccharides	BGC

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6UAX	Download File View File

Crystal structure of a GH128 (subgroup II) endo-beta-1,3-glucanase from Sorangium cellulosum (ScGH128_II)

Santos, C.R., Costa, P.A.C.R., Domingues, M.N., Lima, E.A., Mandelli, F., Vieira, P.S., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Sorangium cellulosum So ce56
Macromolecule	Hypothetical serine rich protein (protein)
Unique Ligands	CA, CL, EPE, TRS

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6UAY	Download File View File

Crystal structure of a GH128 (subgroup III) curdlan-specific exo-beta-1,3-glucanase from Blastomyces gilchristii (BgGH128_III)

Costa, P.A.C.R., Santos, C.R., Domingues, M.N., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Blastomyces gilchristii
Macromolecule	GLYCOSIDE HYDROLASE (protein)

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6UAZ	Download File View File

Crystal structure of a GH128 (subgroup III) curdlan-specific exo-beta-1,3-glucanase from Blastomyces gilchristii (BgGH128_III) in complex with glucose

Costa, P.A.C.R., Santos, C.R., Domingues, M.N., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Blastomyces gilchristii
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique Ligands	BGC

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6UB0	Download File View File

Crystal structure of a GH128 (subgroup III) curdlan-specific exo-beta-1,3-glucanase from Blastomyces gilchristii (BgGH128_III) in complex with laminaribiose at -2 and -1 subsites

Costa, P.A.C.R., Santos, C.R., Domingues, M.N., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Blastomyces gilchristii SLH14081
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique branched monosaccharides	BGC, GLC

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6UB1	Download File View File

Crystal structure of a GH128 (subgroup III) curdlan-specific exo-beta-1,3-glucanase from Blastomyces gilchristii (BgGH128_III) in complex with laminaribiose at -3 and -2 subsites

Costa, P.A.C.R., Santos, C.R., Domingues, M.N., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Blastomyces gilchristii
Macromolecule	GLYCOSIDE HYDROLASE (protein)
Unique Ligands	BGC
Unique branched monosaccharides	BGC

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6UB2	Download File View File

Crystal structure of a GH128 (subgroup IV) endo-beta-1,3-glucanase from Lentinula edodes (LeGH128_IV)

Santos, C.R., Lima, E.A., Mandelli, F., Vieira, P.S., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lentinula edodes
Macromolecule	Endo-beta-1,3-glucanase (protein)
Unique Ligands	CL, MES, SO4

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6UB3	Download File View File

Crystal structure of a GH128 (subgroup IV) endo-beta-1,3-glucanase from Lentinula edodes (LeGH128_IV) with laminaribiose at the surface-binding site

Santos, C.R., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Lentinula edodes
Macromolecule	glycoside hydrolase (protein)
Unique Ligands	CL, MES, SO4
Unique branched monosaccharides	BGC

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6UB4	Download File View File

Crystal structure (C2 form) of a GH128 (subgroup IV) endo-beta-1,3-glucanase from Lentinula edodes (LeGH128_IV) in complex with laminaritriose

Santos, C.R., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Lentinula edodes
Macromolecule	GLYCOSIDE HYDROLASE (protein)
Unique Ligands	CL, MES
Unique branched monosaccharides	BGC

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6UB5	Download File View File

Crystal structure (P21 form) of a GH128 (subgroup IV) endo-beta-1,3-glucanase from Lentinula edodes (LeGH128_IV) in complex with laminaritriose

Santos, C.R., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Lentinula edodes
Macromolecule	Endo-beta-1,3-glucanase (protein)
Unique Ligands	CL
Unique branched monosaccharides	BGC

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6UB6	Download File View File

Crystal structure of a GH128 (subgroup IV) endo-beta-1,3-glucanase from Lentinula edodes (LeGH128_IV) in complex with laminaritetraose

Santos, C.R., Lima, E.A., Mandelli, F., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Lentinula edodes
Macromolecule	Endo-beta-1,3-glucanase (protein)
Unique Ligands	CL
Unique branched monosaccharides	BGC

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6UB7	Download File View File

Crystal structure of a GH128 (subgroup V) exo-beta-1,3-glucanase from Cryptococcus neoformans (CnGH128_V)

Santos, C.R., Costa, P.A.C.R., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Cryptococcus neoformans
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique Ligands	K

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6UB8	Download File View File

Crystal structure of a GH128 (subgroup VI) exo-beta-1,3-glucanase from Aureobasidium namibiae (AnGH128_VI)

Santos, C.R., Vieira, P.S., Domingues, M.N., Cordeiro, R.L., Tomazini, A., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aureobasidium namibiae CBS 147.97
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique Ligands	GOL

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6UBA	Download File View File

Crystal structure of a GH128 (subgroup VI) exo-beta-1,3-glucanase from Aureobasidium namibiae (AnGH128_VI) in complex with laminaritriose

Santos, C.R., Vieira, P.S., Domingues, M.N., Cordeiro, R.L., Tomazini, A., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Aureobasidium namibiae CBS 147.97
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique branched monosaccharides	BGC

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6UBB	Download File View File

Crystal structure of a GH128 (subgroup VI) exo-beta-1,3-glucanase from Aureobasidium namibiae (AnGH128_VI) with laminaribiose at the surface-binding site

Santos, C.R., Vieira, P.S., Domingues, M.N., Cordeiro, R.L., Tomazini, A., Murakami, M.T.

(2020) Nat Chem Biol 16: 920-929

Released	2020-05-20
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Aureobasidium namibiae CBS 147.97
Macromolecule	Glyco_hydro_cc domain-containing protein (protein)
Unique branched monosaccharides	BGC