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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Renzone, G."

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	dengue virus type 4 (6)
	Clitoria ternatea (5)
	Micromonospora chersina (4)
	Pseudomonas aeruginosa PAO1 (3)
	Bos taurus (2)
	Chikungunya virus (1)
	Elaeis guineensis (1)
	Viola philippica (1)
	Vitis vinifera (1)
	Zika virus (1)

Taxonomy

	Eukaryota (10)
	Riboviria (8)
	Bacteria (7)

Experimental Method

X-RAY DIFFRACTION (23)

Polymer Entity Type

	Protein (23)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (5)
	2.0 - 2.5 (8)
	2.5 - 3.0 (4)
	3.0 - 3.5 (3)

Release Date

	2010 - 2014 (7)
	2015 - 2019 (9)
	2020 - 2024 (7)

Enzyme Classification Name

	Hydrolases (6)
	Oxidoreductases (2)

Symmetry Type

	Asymmetric (15)
	Cyclic (8)

SCOP Classification

	Small proteins (3)
	All beta proteins (1)

AllSelected

1 to 23 of 23 Structures

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3SY8 \| pdb_00003sy8	Download File View File

Crystal structure of the response regulator RocR

Chen, M.W., Kotaka, M., Vonrhein, C., Bricogne, G., Lescar, J.

(2012) J Bacteriol 194: 4837-4846

Released	2012-07-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	RocR (protein)
Unique Ligands	EPE, MG

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4AMM \| pdb_00004amm	Download File View File

Crystal Structure of the Acyltransferase Domain of the Iterative Polyketide Synthase in Enediyne Biosynthesis Reveals the Molecular Basis of Substrate Specificity

Liew, C.W., Lescar, J.

(2012) J Biological Chem 287: 23203

Released	2012-05-23
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Micromonospora chersina
Macromolecule	DYNE8 (protein)
Unique Ligands	CL

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4AMN \| pdb_00004amn	Download File View File

Crystal Structure of the Acyltransferase Domain of the Iterative Polyketide Synthase in Enediyne Biosynthesis Reveals the Molecular Basis of Substrate Specificity

Liew, C.W., Lescar, J.

(2012) J Biological Chem 287: 23203

Released	2012-05-23
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Micromonospora chersina
Macromolecule	DYNE8 (protein)
Unique Ligands	CL, GOL

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4AMO \| pdb_00004amo	Download File View File

Crystal Structure of the Acyltransferase Domain of the Iterative Polyketide Synthase in Enediyne Biosynthesis Reveals the Molecular Basis of Substrate Specificity

Liew, C.W., Lescar, J.

(2012) J Biological Chem 287: 23203

Released	2012-05-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Micromonospora chersina
Macromolecule	DYNE8 (protein)
Unique Ligands	ACY

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4AMP \| pdb_00004amp	Download File View File

Crystal Structure of the Acyltransferase Domain of the Iterative Polyketide Synthase in Enediyne Biosynthesis Reveals the Molecular Basis of Substrate Specificity

Liew, C.W., Lescar, J.

(2012) J Biological Chem 287: 23203

Released	2012-05-23
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Micromonospora chersina
Macromolecule	DYNE8 (protein)
Unique Ligands	CL, GOL, MLI

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4JAY \| pdb_00004jay	Download File View File

Crystal structure of P. aeruginosa MurB in complex with NADP+

Chen, M.W., Lohkamp, B., Schnell, R., Lescar, J., Schneider, G.

(2013) PLoS One 8: e66936-e66936

Released	2013-07-17
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	UDP-N-acetylenolpyruvoylglucosamine reductase (protein)
Unique Ligands	B3P, FAD, K, NAP

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4JB1 \| pdb_00004jb1	Download File View File

Crystal structure of P. aeruginosa MurB in complex with NADP+

Chen, M.W., Lohkamp, B., Schnell, R., Lescar, J., Schneider, G.

(2013) PLoS One 8: e66936-e66936

Released	2013-07-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	UDP-N-acetylenolpyruvoylglucosamine reductase (protein)
Unique Ligands	FAD, GOL, NAP

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5H6V \| pdb_00005h6v	Download File View File

Structure of Zika virus protease in complex with a dipeptide inhibitor

Zhang, Z., Chen, M.

(2017) Structure 25: 1242-1250.e3

Released	2017-06-14
Method	X-RAY DIFFRACTION 2.422 Å
Organisms	Zika virus
Macromolecule	Genome polyprotein (protein)
Unique Ligands	7HS

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5YVJ \| pdb_00005yvj	Download File View File

Crystal structure of full length NS2B47-NS3 (gD4NS2BNS3) from Dengue virus 4 in open conformation

Phoo, W.W., El Sahili, A.

To be published

Released	2018-11-28
Method	X-RAY DIFFRACTION 2.508 Å
Organisms	dengue virus type 4
Macromolecule	Genome polyprotein (protein)
Unique Ligands	GOL

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5YVU \| pdb_00005yvu	Download File View File

Crystal structures of unlinked full length NS3 from Dengue virus provide insights into dynamics of protease domain

Phoo, W.W., El Sahili, A.

To be published

Released	2018-11-28
Method	X-RAY DIFFRACTION 2.491 Å
Organisms	Bos taurus dengue virus type 4
Macromolecule	Genome polyprotein (protein) Pancreatic trypsin inhibitor (protein)
Unique Ligands	GOL

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5YVV \| pdb_00005yvv	Download File View File

Crystal structure of full length NS3 protein (gD4NS2BNS3) from DENV4 in closed conformation

PHOO, W.W., Sahili, A.E.

To be published

Released	2018-12-05
Method	X-RAY DIFFRACTION 3.097 Å
Organisms	dengue virus type 4
Macromolecule	Genome polyprotein (protein)

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5YVW \| pdb_00005yvw	Download File View File

Crystal structure of full length NS3 protein (eD4NS2BNS3) from DENV4 in closed conformation

PHOO, W.W., El Sahili, A.

To be published

Released	2018-12-05
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	dengue virus type 4
Macromolecule	Genome polyprotein (protein)
Unique Ligands	EPE

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5YVY \| pdb_00005yvy	Download File View File

Crystal structure of unlinked full length NS3 protein (eD4NS2BNS3) from DENV4 in closed conformation

PHOO, W.W., El Sahili, A.

To be published

Released	2018-11-28
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	dengue virus type 4
Macromolecule	Genome polyprotein (protein)

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5YW1 \| pdb_00005yw1	Download File View File

Crystal structure of full length NS3 protein (eD4NS2BNS3) in complex with Bovine Pancreatic Trypsin Inhibitor

Phoo, W.W., El Sahili, A.

To be published

Released	2019-01-02
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus dengue virus type 4
Macromolecule	FLAVIVIRUS_NS2B (protein) PTI protein (protein) Peptidase S7 (protein)

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6IDV \| pdb_00006idv	Download File View File

Peptide Asparaginyl Ligases from Viola yedoensis

El Sahili, A., Hu, S., Lescar, J.

(2019) Proc Natl Acad Sci U S A 116: 11737-11746

Released	2019-05-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Viola philippica
Macromolecule	Peptide Asparaginyl Ligases (protein)
Unique Ligands	EDO, NAG, PEG
Unique branched monosaccharides	FUC, NAG

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6JIM \| pdb_00006jim	Download File View File

Viral helicase protein

Law, Y.S.

(2019) Proc Natl Acad Sci U S A 116: 9558-9567

Released	2019-04-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Chikungunya virus
Macromolecule	helicase (protein) RNA (5'-R(PUPUPUPUP*UP)-3') (nucleic acid)
Unique Ligands	ADP, AL, CL, F, GOL, MG

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6L4V \| pdb_00006l4v	Download File View File

Turning an asparaginyl endopeptidase into a peptide ligase

El Sahili, A., Lescar, J.

(2020) ACS Catal 10: 8825-8834

Released	2020-10-07
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Clitoria ternatea
Macromolecule	Asparaginyl endopeptidase (protein)
Unique Ligands	EDO, PEG

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6L4W \| pdb_00006l4w	Download File View File

Turning an asparaginyl endopeptidase into a peptide ligase

El Sahili, A., Lescar, J.

(2020) ACS Catal 10: 8825-8834

Released	2020-10-07
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Clitoria ternatea
Macromolecule	Asparaginyl endopeptidase (protein)
Unique Ligands	EDO, NAG, PEG