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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Rizzo, A.A."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Homo sapiens (8)
	Lederbergvirus P22 (1)

Taxonomy

	Eukaryota (8)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (5)
	SOLUTION NMR (4)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (1)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (4)
	2020 - 2024 (2)

Enzyme Classification Name

	Transferases (8)
	Ligases (2)

Symmetry Type

Asymmetric (9)

SCOP Classification

	Alpha and beta proteins (a+b) (1)
	Artifacts (1)

AllSelected

1 to 9 of 9 Structures

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2M5S \| pdb_00002m5s	Download File View File

High-resolution NMR structure and cryo-EM imaging support multiple functional roles for the accessory I-domain of phage P22 coat protein

Rizzo, A.A., Suhanovsky, M.M., Baker, M.L., Fraser, L.C.R., Jones, L.M., Rempel, D.L., Gross, M.L., Chiu, W., Alexandrescu, A.T., Teschke, C.M.

(2014) Structure 22: 830-841

Released	2014-03-05
Method	SOLUTION NMR
Organisms	Lederbergvirus P22
Macromolecule	Coat protein (protein)

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2MRE \| pdb_00002mre	Download File View File

NMR structure of the Rad18-UBZ/ubiquitin complex

Rizzo, A.A., Salerno, P.E., Bezsonova, I., Korzhnev, D.M.

(2014) Biochemistry 53: 5895-5906

Released	2014-10-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase RAD18 (protein) Polyubiquitin-C (protein)
Unique Ligands	ZN

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2MRF \| pdb_00002mrf	Download File View File

NMR structure of the ubiquitin-binding zinc finger (UBZ) domain from human Rad18

Rizzo, A.A., Salerno, P.E., Bezsonova, I., Korzhnev, D.M.

(2014) Biochemistry 53: 5895-5906

Released	2014-10-01
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase RAD18 (protein)
Unique Ligands	ZN

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2N1G \| pdb_00002n1g	Download File View File

Structure of C-terminal domain of human polymerase Rev1 in complex with PolD3 RIR-motif

Pustovalova, Y., Korzhnev, D.

(2016) Biochemistry 55: 2043-2053

Released	2016-04-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA polymerase delta subunit 3 (protein) DNA repair protein REV1 (protein)

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6BC8 \| pdb_00006bc8	Download File View File

Crystal structure of Rev7-R124A/Rev3-RBM2 (residues 1988-2014) complex

Rizzo, A.A., Hao, B., Li, Y., Korzhnev, D.M.

(2018) Proc Natl Acad Sci U S A 115: E8191-E8200

Released	2018-08-01
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase zeta catalytic subunit (protein) Mitotic spindle assembly checkpoint protein MAD2B (protein)
Unique Ligands	ACT, SO4

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6BCD \| pdb_00006bcd	Download File View File

Crystal structure of Rev7-K44A/R124A/A135D in complex with Rev3-RBM2 (residues 1988-2014)

Rizzo, A.A., Hao, B., Li, Y., Korzhnev, D.M.

(2018) Proc Natl Acad Sci U S A 115: E8191-E8200

Released	2018-08-01
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase zeta catalytic subunit (protein) Mitotic spindle assembly checkpoint protein MAD2B (protein)

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6BI7 \| pdb_00006bi7	Download File View File

Crystal structure of Rev7-WT/Rev3 as a monomer under high-salt conditions

Rizzo, A.A., Korzhnev, D.M., Hao, B., Li, Y.

(2018) Proc Natl Acad Sci U S A 115: E8191-E8200

Released	2018-08-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase zeta catalytic subunit (protein) Mitotic spindle assembly checkpoint protein MAD2B (protein)

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6WS0 \| pdb_00006ws0	Download File View File

Rational drug design of phenazopyridine derivatives as novel inhibitors of Rev1-CT

McPherson, K.S., Korzhnev, D.M.

(2021) ChemMedChem 16: 1126-1132

Released	2020-12-23
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase zeta catalytic subunit (protein) DNA repair protein REV1 (protein) Mitotic spindle assembly checkpoint protein MAD2B (protein)

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6WS5 \| pdb_00006ws5	Download File View File

Rational drug design of phenazopyridine derivatives as novel inhibitors of Rev1-CT

McPherson, K.S., Korzhnev, D.M.

(2021) ChemMedChem 16: 1126-1132

Released	2020-12-23
Method	X-RAY DIFFRACTION 2.472 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase zeta catalytic subunit (protein) DNA repair protein REV1 (protein) Mitotic spindle assembly checkpoint protein MAD2B (protein)
Unique Ligands	U8M

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2M5S | pdb_00002m5s

High-resolution NMR structure and cryo-EM imaging support multiple functional roles for the accessory I-domain of phage P22 coat protein

2MRE | pdb_00002mre

NMR structure of the Rad18-UBZ/ubiquitin complex

2MRF | pdb_00002mrf

NMR structure of the ubiquitin-binding zinc finger (UBZ) domain from human Rad18

2N1G | pdb_00002n1g

Structure of C-terminal domain of human polymerase Rev1 in complex with PolD3 RIR-motif

6BC8 | pdb_00006bc8

Crystal structure of Rev7-R124A/Rev3-RBM2 (residues 1988-2014) complex

6BCD | pdb_00006bcd

Crystal structure of Rev7-K44A/R124A/A135D in complex with Rev3-RBM2 (residues 1988-2014)

6BI7 | pdb_00006bi7

Crystal structure of Rev7-WT/Rev3 as a monomer under high-salt conditions

6WS0 | pdb_00006ws0

Rational drug design of phenazopyridine derivatives as novel inhibitors of Rev1-CT

6WS5 | pdb_00006ws5

Rational drug design of phenazopyridine derivatives as novel inhibitors of Rev1-CT

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2M5S | pdb_00002m5s

2MRE | pdb_00002mre

2MRF | pdb_00002mrf

2N1G | pdb_00002n1g

6BC8 | pdb_00006bc8

6BCD | pdb_00006bcd

6BI7 | pdb_00006bi7

6WS0 | pdb_00006ws0

6WS5 | pdb_00006ws5