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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Sather, A."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Homo sapiens (6)
	Arabidopsis thaliana (3)
	synthetic construct (3)
	Rattus norvegicus (2)
	Lama glama (1)
	Mus musculus (1)

Taxonomy

	Eukaryota (11)
	other sequences (3)

Experimental Method

X-RAY DIFFRACTION (11)

Polymer Entity Type

	Protein (11)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (9)
	2020 - 2024 (1)

Enzyme Classification Name

	Hydrolases (4)
	Oxidoreductases (3)
	Transferases (2)

Symmetry Type

	Asymmetric (10)
	Cyclic (1)

SCOP Classification

	All beta proteins (2)
	Alpha and beta proteins (a+b) (3)
	Alpha and beta proteins (a/b) (1)

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1 to 11 of 11 Structures

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3UPR \| pdb_00003upr	Download File View File

HLA-B*57:01 complexed to pep-V and Abacavir

Pompeu, Y.A., Ostrov, D.A.

(2012) Proc Natl Acad Sci U S A 109: 9959-9964

Released	2012-06-13
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-57 alpha chain (protein) pep-V (protein)
Unique Ligands	1KX, CL

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5HTZ \| pdb_00005htz	Download File View File

BACE1 in complex with (S)-5-(3-chloro-5-(5-(prop-1-yn-1-yl)pyridin-3-yl)thiophen-2-yl)-2,5-dimethyl-1,2,4-thiadiazinan-3-iminium 1,1-dioxide

Orth, P.

(2016) J Med Chem 59: 10435-10450

Released	2016-11-09
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	66J

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5HU0 \| pdb_00005hu0	Download File View File

BACE1 in complex with 4-(3-(furan-2-carboxamido)phenyl)-1-methyl-5-oxo-4-phenylimidazolidin-2-iminium

Orth, P.

(2016) J Med Chem 59: 10435-10450

Released	2016-11-09
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	66H, TLA

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5HU1 \| pdb_00005hu1	Download File View File

BACE1 in complex with (R)-N-(3-(3-amino-2,5-dimethyl-1,1-dioxido-5,6-dihydro-2H-1,2,4-thiadiazin-5-yl)-4-fluorophenyl)-5-fluoropicolinamide

Orth, P.

(2016) J Med Chem 59: 10435-10450

Released	2016-11-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	66F

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5I7U \| pdb_00005i7u	Download File View File

Human DPP4 in complex with a novel tricyclic hetero-cycle inhibitor

Scapin, G.

(2016) ACS Med Chem Lett 7: 498-501

Released	2016-06-08
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 4 (protein)
Unique Ligands	6AJ, NA, NAG
Unique branched monosaccharides	NAG

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5U6I \| pdb_00005u6i	Download File View File

Discovery of MLi-2, an Orally Available and Selective LRRK2 Inhibitor that Reduces Brain Kinase Activity

Scott, J.D., DeMong, D.E., Fell, M.J., Mirescu, C., Basu, K., Greshock, T.J., Morrow, J.A., Xiao, L., Hruza, A., Harris, J., Tiscia, H.E., Chang, R.K., Embrey, M.W., McCauley, J.A., Li, W., Lin, S., Liu, H., Dai, X., Baptista, M., Agnihotri, G., Columbus, J., Mei, H., Poirier, M., Zhou, X., Lin, Y., Yin, Z., Sanders, J.M., Drolet, R.E., Kern, J.T., Kennedy, M.E., Parker, E.M., Stamford, A.W., Nargund, R., Miller, M.W.

(2017) J Med Chem 60: 2983-2992

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Rattus norvegicus
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	81Y, SO4

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6DCG \| pdb_00006dcg	Download File View File

Discovery of MK-8353: An Orally Bioavailable Dual Mechanism ERK Inhibitor for Oncology

Boga, S.B., Deng, Y., Zhu, L., Nan, Y., Cooper, A., Shipps Jr., G.W., Doll, R., Shih, N., Zhu, H., Sun, R., Wang, T., Paliwal, S., Tsui, H., Gao, X., Yao, X., Desai, J., Wang, J., Alhassan, A.B., Kelly, J., Patel, M., Muppalla, K., Gudipati, S., Zhang, L., Buevich, A., Hesk, D., Carr, D., Dayananth, P., Mei, H., Cox, K., Sherborne, B., Hruza, A.W., Xiao, L., Jin, W., Long, B., Liu, G., Taylor, S.A., Kirschmeier, P., Windsor, W.T., Bishop, R., Samatar, A.A.

(2018) ACS Med Chem Lett 9: 761-767

Released	2018-08-08
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Rattus norvegicus
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	G67, SO4

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6JNL \| pdb_00006jnl	Download File View File

REF6 ZnF2-4-NAC004 complex

Yao, Q.Q., Wu, B.X., Ma, J.B.

(2019) Nat Commun 10: 2063-2063

Released	2019-03-27
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Arabidopsis thaliana synthetic construct
Macromolecule	Lysine-specific demethylase REF6 (protein) DNA (5'-D(CPAPAPAPAPCPAPGPAPGPA)-3') (nucleic acid) DNA (5'-D(TPTPCPTPCPTPGPTPTPTPTP*G)-3') (nucleic acid)
Unique Ligands	D5M, GOL, MG, ZN

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6JNM \| pdb_00006jnm	Download File View File

REF6 ZnF2-4-NAC004-mC3 complex

Yao, Q.Q., Wu, B.X., Ma, J.B.

(2019) Nat Commun 10: 2063-2063

Released	2019-03-27
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Arabidopsis thaliana synthetic construct
Macromolecule	Lysine-specific demethylase REF6 (protein) DNA (5'-D(CPAPAPAPAPCPAPGPAPGPAPA)-3') (nucleic acid) DNA (5'-D(TPTPCPTP(5CM)PTPGPTPTPTPTPG)-3') (nucleic acid)
Unique Ligands	ZN

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6JNN \| pdb_00006jnn	Download File View File

REF6 ZnF2-4-NAC004-mC1 complex

Yao, Q.Q., Wu, B.X., Ma, J.B.

(2019) Nat Commun 10: 2063-2063

Released	2019-03-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Arabidopsis thaliana synthetic construct
Macromolecule	Lysine-specific demethylase REF6 (protein) DNA (5'-D(CPAPAPAPAPCPAPGPAPGPAPA)-3') (nucleic acid) DNA (5'-D(TPTP(5CM)PTPCPTPGPTPTPTPTPG)-3') (nucleic acid)
Unique Ligands	ZN

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7Q6C \| pdb_00007q6c	Download File View File

complement C6 FIM1-2 bound to CP010 antibody

Olesen, H.G., Andersen, G.R.

(2022) J Innate Immun 1-21

Released	2022-05-25
Method	X-RAY DIFFRACTION 2.29274 Å
Organisms	Homo sapiens Lama glama Mus musculus
Macromolecule	CP010 heavy chain (protein) CP010 light chain (protein) Complement component C6 (protein) kappa specific nanobody (protein)
Unique Ligands	ACT

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3UPR | pdb_00003upr

HLA-B*57:01 complexed to pep-V and Abacavir

5HTZ | pdb_00005htz

BACE1 in complex with (S)-5-(3-chloro-5-(5-(prop-1-yn-1-yl)pyridin-3-yl)thiophen-2-yl)-2,5-dimethyl-1,2,4-thiadiazinan-3-iminium 1,1-dioxide

5HU0 | pdb_00005hu0

BACE1 in complex with 4-(3-(furan-2-carboxamido)phenyl)-1-methyl-5-oxo-4-phenylimidazolidin-2-iminium

5HU1 | pdb_00005hu1

BACE1 in complex with (R)-N-(3-(3-amino-2,5-dimethyl-1,1-dioxido-5,6-dihydro-2H-1,2,4-thiadiazin-5-yl)-4-fluorophenyl)-5-fluoropicolinamide

5I7U | pdb_00005i7u

Human DPP4 in complex with a novel tricyclic hetero-cycle inhibitor

5U6I | pdb_00005u6i

Discovery of MLi-2, an Orally Available and Selective LRRK2 Inhibitor that Reduces Brain Kinase Activity

6DCG | pdb_00006dcg

Discovery of MK-8353: An Orally Bioavailable Dual Mechanism ERK Inhibitor for Oncology

6JNL | pdb_00006jnl

REF6 ZnF2-4-NAC004 complex

6JNM | pdb_00006jnm

REF6 ZnF2-4-NAC004-mC3 complex

6JNN | pdb_00006jnn

REF6 ZnF2-4-NAC004-mC1 complex

7Q6C | pdb_00007q6c

complement C6 FIM1-2 bound to CP010 antibody

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3UPR | pdb_00003upr

5HTZ | pdb_00005htz

5HU0 | pdb_00005hu0

5HU1 | pdb_00005hu1

5I7U | pdb_00005i7u

5U6I | pdb_00005u6i

6DCG | pdb_00006dcg

6JNL | pdb_00006jnl

6JNM | pdb_00006jnm

6JNN | pdb_00006jnn

7Q6C | pdb_00007q6c