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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Schmidt, T.G."

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Search Summary

This query matches 120 Structures.

Refinements

Structure Determination Methodology

experimental (120)

Scientific Name of Source Organism

	Klebsiella aerogenes KCTC 2190 (27)
	Severe acute respiratory syndrome coronavirus 2 (23)
	Middle East respiratory syndrome-related coronavirus (14)
	Homo sapiens (9)
	Aquifex aeolicus (3)
	Ascaris suum (3)
	Francisella philomiragia (3)
	Rattus norvegicus (3)
	Aspergillus nidulans (2)
	Borreliella burgdorferi B31 (2)

More...

Taxonomy

	Bacteria (48)
	Riboviria (37)
	Eukaryota (33)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (113)
	SOLUTION NMR (7)

Polymer Entity Type

Protein (120)

Refinement Resolution (Å)

	1.0 - 1.5 (14)
	1.5 - 2.0 (60)
	2.0 - 2.5 (26)
	2.5 - 3.0 (9)
	3.0 - 3.5 (4)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (4)
	2005 - 2009 (6)
	2010 - 2014 (7)
	2015 - 2019 (10)
	2020 - 2024 (89)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (34)
	Oxidoreductases (18)
	Transferases (13)
	Lyases (13)
	Isomerases (2)
	Ligases (3)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Cyclic (53)
	Asymmetric (39)
	Dihedral (27)
	Octahedral (1)

SCOP Classification

	All beta proteins (6)
	Alpha and beta proteins (a+b) (8)
	Alpha and beta proteins (a/b) (3)
	Artifacts (1)

AllSelected

1 to 25 of 120 Structures

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1E6C \| pdb_00001e6c	Download File View File

K15M MUTANT OF SHIKIMATE KINASE FROM ERWINIA CHRYSANTHEMI

Maclean, J., Krell, T., Coggins, J.R., Lapthorn, A.J.

(2001) Protein Sci 10: 1137

Released	2001-06-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Dickeya chrysanthemi
Macromolecule	SHIKIMATE KINASE (protein)
Unique Ligands	CL, MPD, MRD, PO4

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1OGW \| pdb_00001ogw	Download File View File

Synthetic Ubiquitin with fluoro-Leu at 50 and 67

Alexeev, D., Ramage, R., Young, D.W., Sawyer, L.

(2003) Chembiochem 4: 894

Released	2003-05-30
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN (protein)

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1TI7 \| pdb_00001ti7	Download File View File

CRYSTAL STRUCTURE OF NMRA, A NEGATIVE TRANSCRIPTIONAL REGULATOR, IN COMPLEX WITH NADP AT 1.7A RESOLUTION

Lamb, H.K., Leslie, K., Dodds, A.L., Nutley, M., Cooper, A., Johnson, C., Thompson, P., Stammers, D.K., Hawkins, A.R.

(2003) J Biological Chem 278: 32107-32114

Released	2004-06-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Aspergillus nidulans
Macromolecule	nitrogen metabolite repression regulator NmrA (protein)
Unique Ligands	CL, GOL, K, NAP

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1XBD \| pdb_00001xbd	Download File View File

INTERNAL XYLAN BINDING DOMAIN FROM CELLULOMONAS FIMI XYLANASE D, NMR, 5 STRUCTURES

Simpson, P.J., Bolam, D.N., Cooper, A., Ciruela, A., Hazlewood, G.P., Gilbert, H.J., Williamson, M.P.

(1999) Structure 7: 853-864

Released	1999-07-21
Method	SOLUTION NMR
Organisms	Cellulomonas fimi
Macromolecule	XYLANASE D (protein)

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1XGK \| pdb_00001xgk	Download File View File

CRYSTAL STRUCTURE OF N12G AND A18G MUTANT NMRA

Lamb, H.K., Ren, J., Park, A., Johnson, C., Leslie, K., Cocklin, S., Thompson, P., Mee, C., Cooper, A., Stammers, D.K., Hawkins, A.R.

(2004) Protein Sci 13: 3127-3138

Released	2004-12-14
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Aspergillus nidulans
Macromolecule	NITROGEN METABOLITE REPRESSION REGULATOR NMRA (protein)
Unique Ligands	CL, GOL, K, PO4

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2BSP \| pdb_00002bsp	Download File View File

BACILLUS SUBTILIS PECTATE LYASE R279K MUTANT

Pickersgill, R.

To be published

Released	1998-08-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus subtilis
Macromolecule	PROTEIN (PECTATE LYASE) (protein)
Unique Ligands	CA

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2VH3 \| pdb_00002vh3	Download File View File

ranasmurfin

Oke, M., Ching, R.T., Carter, L.G., Johnson, K.A., Liu, H., McMahon, S.A., Bloch Junior, C., Botting, C.H., Walsh, M.A., Latiff, A.A., Kennedy, M.W., Cooper, A., Naismith, J.H.

(2008) Angew Chem Int Ed Engl 47: 7853

Released	2007-12-04
Method	X-RAY DIFFRACTION 1.16 Å
Organisms	Polypedates leucomystax
Macromolecule	RANASMURFIN (protein)
Unique Ligands	GOL, SO4, ZN

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2WGO \| pdb_00002wgo	Download File View File

Structure of ranaspumin-2, a surfactant protein from the foam nests of a tropical frog

Mackenzie, C.D., Smith, B.O., Kennedy, M.W., Cooper, A.

(2009) Biophys J 96: 4984

Released	2009-06-23
Method	SOLUTION NMR
Organisms	Engystomops pustulosus
Macromolecule	RANASPUMIN-2 (protein)

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2XBD \| pdb_00002xbd	Download File View File

INTERNAL XYLAN BINDING DOMAIN FROM CELLULOMONAS FIMI XYLANASE D, NMR, MINIMIZED AVERAGE STRUCTURE

Simpson, P.J., Bolam, D.N., Cooper, A., Ciruela, A., Hazlewood, G.P., Gilbert, H.J., Williamson, M.P.

(1999) Structure 7: 853-864

Released	1999-07-21
Method	SOLUTION NMR
Organisms	Cellulomonas fimi
Macromolecule	XYLANASE D (protein)

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2XV9 \| pdb_00002xv9	Download File View File

The solution structure of ABA-1A saturated with oleic acid

Smith, B.O., Kennedy, M.W., Cooper, A., Meenan, N.A.G., Bromek, K.

(2011) PLoS Negl Trop Dis 5: e1040-e1040

Released	2011-08-10
Method	SOLUTION NMR
Organisms	Ascaris suum
Macromolecule	ABA-1A1 REPEAT UNIT (protein)

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2Y37 \| pdb_00002y37	Download File View File

The discovery of novel, potent and highly selective inhibitors of inducible nitric oxide synthase (iNOS)

Cheshire, D.R., Andrews, G., Beaton, H.G., Birkinshaw, T.N., Boughton-Smith, N., Connolly, S., Cook, T.R., Cooper, A., Cooper, S.L., Cox, D., Dixon, J., Gensmantel, N., Hamley, P.J., Harrison, R., Hartopp, P., Kack, H., Luker, T., Mete, A., Millichip, I., Nicholls, D.J., Pimm, A.D., St-Gallay, S.A., Wallace, A.V.

(2011) Bioorg Med Chem Lett 21: 2468

Released	2011-04-13
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	NITRIC OXIDE SYNTHASE, INDUCIBLE (protein)
Unique Ligands	A54, GOL, H4B, HEM, SO4

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3D4K \| pdb_00003d4k	Download File View File

Concanavalin A Complexed to a Synthetic Analog of the Trimannoside

Kadirvelraj, R., Foley, B.L., Dyekjaer, J.D., Woods, R.J.

(2008) J Am Chem Soc 130: 16933-16942

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Canavalia ensiformis
Macromolecule	Concanavalin-A (protein)
Unique Ligands	CA, GOL, MN
Unique branched monosaccharides	H1M, MAN

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3EFR \| pdb_00003efr	Download File View File

Biotin protein ligase R40G mutant from Aquifex aeolicus in complex with biotin

Tron, C.M., McNae, I.W., Walkinshaw, M.D., Baxter, R.L., Campopiano, D.J.

(2009) J Mol Biology 387: 129-146

Released	2009-06-09
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Aquifex aeolicus
Macromolecule	Biotin [acetyl-CoA-carboxylase] ligase (protein)
Unique Ligands	BTN, SO4

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3EFS \| pdb_00003efs	Download File View File

Biotin protein ligase from Aquifex aeolicus in complex with biotin and ATP

Tron, C.M., McNae, I.W., Walkinshaw, M.D., Baxter, R.L., Campopiano, D.J.

(2009) J Mol Biology 387: 129-146

Released	2009-06-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aquifex aeolicus
Macromolecule	Biotin [acetyl-CoA-carboxylase] ligase (protein)
Unique Ligands	ATP, BTN, SO4

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3FJP \| pdb_00003fjp	Download File View File

Apo structure of Biotin protein ligase from Aquifex aeolicus

McNae, I.W., Tron, C.M., Baxter, R.L., Walkinshaw, M.D., Campopiano, D.J.

(2009) J Mol Biology 387: 129-146

Released	2009-06-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aquifex aeolicus
Macromolecule	Biotin [acetyl-CoA-carboxylase] ligase (protein)
Unique Ligands	SO4

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3ZPM \| pdb_00003zpm	Download File View File

Solution structure of latherin

Vance, S.J., MacDonald, R.E., Cooper, A., Kennedy, M.W., Smith, B.O.

(2013) J R Soc Interface 10: 20130453-20130453

Released	2013-06-26
Method	SOLUTION NMR
Organisms	Equus caballus
Macromolecule	LATHERIN (protein)

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3ZQR \| pdb_00003zqr	Download File View File

NMePheB25 insulin analogue crystal structure

Antolikova, E., Zakova, L., Turkenburg, J.P., Watson, C.J., Hanclova, I., Sanda, M., Cooper, A., Kraus, T., Brzozowski, A.M., Jiracek, J.A.

(2011) J Biological Chem 286: 36968

Released	2011-08-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	INSULIN A CHAIN (protein) INSULIN B CHAIN (protein)
Unique Ligands	CL, IPH, ZN

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3ZS2 \| pdb_00003zs2	Download File View File

TyrB25,NMePheB26,LysB28,ProB29-insulin analogue crystal structure

Antolikova, E., Zakova, L., Turkenburg, J.P., Watson, C.J., Hanclova, I., Sanda, M., Cooper, A., Kraus, T., Brzozowski, A.M., Jiracek, J.A.

(2011) J Biological Chem 286: 36968

Released	2011-08-31
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Homo sapiens
Macromolecule	INSULIN A CHAIN (protein) INSULIN B CHAIN (protein)
Unique Ligands	CL, IPH, ZN

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4QYY \| pdb_00004qyy	Download File View File

Discovery of Novel, Dual Mechanism ERK Inhibitors by Affinity Selection Screening of an Inactive Kinase State

Deng, Y., Shipps, G.W., Cooper, A., English, J.M., Annis, D.A., Carr, D., Nan, Y., Wang, T., Zhu, Y.H., Chuang, C., Dayananth, P., Hruza, A.W., Xiao, L., Jin, W., Kirschmeier, P., Windsor, W.T., Samatar, A.A.

(2014) J Med Chem 57: 8817-8826

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Rattus norvegicus
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	3G7, SO4

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4UET \| pdb_00004uet	Download File View File

Diversity in the structures and ligand binding sites among the fatty acid and retinol binding proteins of nematodes revealed by Na-FAR-1 from Necator americanus

Rey-Burusco, M.F., Ibanez Shimabukuro, M., Griffiths, K., Cooper, A., Kennedy, M.W., Corsico, B., Smith, B.O., Griffiths, K.

(2015) Biochem J 471: 403

Released	2015-09-16
Method	SOLUTION NMR
Organisms	Necator americanus
Macromolecule	NEMATODE FATTY ACID RETINOID BINDING PROTEIN (protein)

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4UX6 \| pdb_00004ux6	Download File View File

The discovery of novel, potent and highly selective inhibitors of inducible nitric oxide synthase (iNOS)

Cheshire, D.R., Andrews, G., Beaton, H.G., Birkinshaw, T., Boughton-Smith, N., Connolly, S., Cook, T.R., Cooper, A., Cooper, S.L., Cox, D., Dixon, J., Gensmantel, N., Hamley, P.J., Harrison, R., Hartopp, P., Kack, H., Luker, T., Mete, A., Millichip, I., Nicholls, D.J., Pimm, A.D., St-Gallay, S.A., Wallace, A.V.

(2011) Bioorg Med Chem Lett 21: 2468

Released	2014-10-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mus musculus
Macromolecule	NITRIC OXIDE SYNTHASE, INDUCIBLE (protein)
Unique Ligands	H4B, HEM, YWO

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4XCP \| pdb_00004xcp	Download File View File

Fatty Acid and Retinol binding protein Na-FAR-1 from Necator americanus

Gabrielsen, M., Rey-Burusco, M.F., Ibanez-Shimabukuro, M., Griffiths, K., Kennedy, M.W., Corsico, B., Smith, B.O.

(2015) Biochem J 471: 403-414

Released	2015-09-16
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Necator americanus
Macromolecule	Nematode fatty acid retinoid binding protein (protein)
Unique Ligands	PLM

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5FBN \| pdb_00005fbn	Download File View File

BTK kinase domain with inhibitor 1

Raaijmakers, H.C.A., Vu-Pham, D.

(2016) ACS Med Chem Lett 7: 198-203

Released	2016-02-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase BTK (protein)
Unique Ligands	5WE, 5WF, CL, EDO

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5FBO \| pdb_00005fbo	Download File View File

BTK-inhibitor co-structure

Fischmann, T.O.

(2016) ACS Med Chem Lett 7: 198-203

Released	2016-03-23
Method	X-RAY DIFFRACTION 1.894 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase BTK (protein)
Unique Ligands	5WE, 5WH

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5HD4 \| pdb_00005hd4	Download File View File

Dissecting Therapeutic Resistance to ERK Inhibition Rat Wild Type SCH772984 in complex with (3R)-1-(2-oxo-2-{4-[4-(pyrimidin-2-yl)phenyl]piperazin-1-yl}ethyl)-N-[3-(pyridin-4-yl)-2H-indazol-5-yl]pyrrolidine-3-carboxamide

Jha, S., Morris, E.J., Hruza, A., Mansueto, M.S., Schroeder, G., Arbanas, J., McMasters, D., Restaino, C.R., Dayananth, R., Black, S., Elsen, N.L., Mannarino, A., Cooper, A., Fawell, S., Zawel, L., Jayaraman, L., Samatar, A.A.

(2016) Mol Cancer Ther 15: 548-559

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Rattus norvegicus
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	38Z, DMS, PG4, SO4

1 to 25 of 120 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1E6C | pdb_00001e6c

1OGW | pdb_00001ogw

1TI7 | pdb_00001ti7

1XBD | pdb_00001xbd

1XGK | pdb_00001xgk

2BSP | pdb_00002bsp

2VH3 | pdb_00002vh3

2WGO | pdb_00002wgo

2XBD | pdb_00002xbd

2XV9 | pdb_00002xv9

2Y37 | pdb_00002y37

3D4K | pdb_00003d4k

3EFR | pdb_00003efr

3EFS | pdb_00003efs

3FJP | pdb_00003fjp

3ZPM | pdb_00003zpm

3ZQR | pdb_00003zqr

3ZS2 | pdb_00003zs2

4QYY | pdb_00004qyy

4UET | pdb_00004uet

4UX6 | pdb_00004ux6

4XCP | pdb_00004xcp

5FBN | pdb_00005fbn

5FBO | pdb_00005fbo

5HD4 | pdb_00005hd4