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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Seeger, M.A."

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Search Summary

This query matches 96 Structures.

Refinements

Structure Determination Methodology

experimental (96)

Scientific Name of Source Organism

	synthetic construct (39)
	Escherichia coli K-12 (16)
	Mycolicibacterium thermoresistibile ATCC 19527 (15)
	Vicugna pacos (11)
	Severe acute respiratory syndrome coronavirus 2 (10)
	Thermotoga maritima MSB8 (10)
	Escherichia coli (5)
	Escherichia coli O157:H7 (5)
	Mus musculus (5)
	Homo sapiens (4)

More...

Taxonomy

	Bacteria (68)
	other sequences (39)
	Eukaryota (31)
	Riboviria (10)
	Archaea (2)
	unclassified sequences (2)

Experimental Method

	X-RAY DIFFRACTION (56)
	ELECTRON MICROSCOPY (40)

Polymer Entity Type

Protein (96)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (10)
	2.0 - 2.5 (19)
	2.5 - 3.0 (23)
	3.0 - 3.5 (23)
	3.5 - 4.0 (15)
	4.0 - 4.5 (4)
	> 4.5 (1)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (16)
	2015 - 2019 (21)
	2020 - 2024 (54)
	2025 - 2029 (3)

Enzyme Classification Name

	Translocases (20)
	Hydrolases (2)
	Transferases (2)

Membrane Protein Annotation

	PDBTM (63)
	mpstruc (57)
	MemProtMD (52)
	OPM (26)

Symmetry Type

	Asymmetric (78)
	Cyclic (19)

SCOP Classification

	Alpha and beta proteins (a/b) (6)
	Artifacts (3)
	All beta proteins (4)
	Membrane and cell surface proteins and peptides (3)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 96 Structures

Page 1 of 4

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2GIF \| pdb_00002gif	Download File View File

Asymmetric structure of trimeric AcrB from Escherichia coli

Seeger, M.A., Schiefner, A., Eicher, T., Verrey, F., Diederichs, K., Pos, K.M.

(2006) Science 313: 1295-1298

Released	2006-09-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	Acriflavine resistance protein B (protein)
Unique Ligands	FLC

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2HRT \| pdb_00002hrt	Download File View File

Asymmetric structure of trimeric AcrB from Escherichia coli

Seeger, M.A., Schiefner, A., Eicher, T., Verrey, F., Diederichs, K., Pos, K.M.

(2006) Science 313: 1295-1298

Released	2006-09-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli K-12
Macromolecule	Acriflavine resistance protein B (protein)
Unique Ligands	FLC

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3NOC \| pdb_00003noc	Download File View File

Designed ankyrin repeat protein (DARPin) binders to AcrB: Plasticity of the Interface

Monroe, N., Briand, C., Gruetter, M.G.

(2011) J Struct Biol 174: 269-281

Released	2011-05-18
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Acriflavine resistance protein B (protein) Designed ankyrin repeat protein (protein)

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3NOG \| pdb_00003nog	Download File View File

Designed ankyrin repeat protein (DARPin) Binders to AcrB: Plasticity of the Interface

Monroe, N., Briand, C., Gruetter, M.G.

(2011) J Struct Biol 174: 269-281

Released	2011-05-18
Method	X-RAY DIFFRACTION 3.34 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Acriflavine resistance protein B (protein) Designed ankyrin repeat protein (protein)

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3QF4 \| pdb_00003qf4	Download File View File

Crystal structure of a heterodimeric ABC transporter in its inward-facing conformation

Hohl, M., Briand, C., Gruetter, M.G., Seeger, M.A.

(2012) Nat Struct Mol Biol 19: 395-402

Released	2012-03-28
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Thermotoga maritima
Macromolecule	ABC transporter, ATP-binding protein (protein) Uncharacterized ABC transporter ATP-binding protein TM_0288 (protein)
Unique Ligands	ANP, MG

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4DX5 \| pdb_00004dx5	Download File View File

Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop

Eicher, T., Cha, H., Seeger, M.A., Brandstaetter, L., El-Delik, J., Bohnert, J.A., Kern, W.V., Verrey, F., Gruetter, M.G., Diederichs, K., Pos, K.M.

(2012) Proc Natl Acad Sci U S A 109: 5687-5692

Released	2012-05-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Acriflavine resistance protein B (protein) DARPIN (protein)
Unique Ligands	C14, D10, D12, DD9, GOL, HEX, LMT, LMU, MIY, OCT, SO4, UND

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4DX6 \| pdb_00004dx6	Download File View File

Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop

Eicher, T., Cha, H., Seeger, M.A., Brandstaetter, L., El-Delik, J., Bohnert, J.A., Kern, W.V., Verrey, F., Gruetter, M.G., Diederichs, K., Pos, K.M.

(2012) Proc Natl Acad Sci U S A 109: 5687-5692

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Acriflavine resistance protein B (protein) DARPIN (protein)
Unique Ligands	LMT

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4DX7 \| pdb_00004dx7	Download File View File

Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop

Eicher, T., Cha, H., Seeger, M.A., Brandstaetter, L., El-Delik, J., Bohnert, J.A., Kern, W.V., Verrey, F., Gruetter, M.G., Diederichs, K., Pos, K.M.

(2012) Proc Natl Acad Sci U S A 109: 5687-5692

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.253 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Acriflavine resistance protein B (protein) DARPIN (protein)
Unique Ligands	D10, D12, DM2, GOL, HEX, LMT, LMU

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4J7W \| pdb_00004j7w	Download File View File

E3_5 DARPin L86A mutant

Seeger, M.A., Gruetter, M.G.

(2013) Protein Sci 22: 1239-1257

Released	2013-08-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	synthetic construct
Macromolecule	DARPin_E3_5_L86A (protein)

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4J8Y \| pdb_00004j8y	Download File View File

E3_5 DARPin D77S mutant

Seeger, M.A., Gruetter, M.G.

(2013) Protein Sci 22: 1239-1257

Released	2013-08-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	synthetic construct
Macromolecule	DARPin_E3_5_D77S (protein)

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4JB8 \| pdb_00004jb8	Download File View File

Caspase-7 in Complex with DARPin C7_16

Fluetsch, A., Seeger, M.A., Gruetter, M.G.

(2013) Protein Sci 22: 1239-1257

Released	2013-08-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Caspase-7 subunit p11 (protein) Caspase-7 subunit p20 (protein) DARPin C7_16 (protein)

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4Q4A \| pdb_00004q4a	Download File View File

Improved model of AMP-PNP bound TM287/288

Hohl, M., Gruetter, M.G., Seeger, M.A.

(2014) Proc Natl Acad Sci U S A 111: 11025-11030

Released	2014-07-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	ABC transporter (protein) Uncharacterized ABC transporter ATP-binding protein TM_0288 (protein)
Unique Ligands	ANP, MG

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4Q4H \| pdb_00004q4h	Download File View File

TM287/288 in its apo state

Hohl, M., Gruetter, M.G., Seeger, M.A.

(2014) Proc Natl Acad Sci U S A 111: 11025-11030

Released	2014-07-16
Method	X-RAY DIFFRACTION 2.527 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	ABC transporter (protein) Uncharacterized ABC transporter ATP-binding protein TM_0288 (protein)

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4Q4J \| pdb_00004q4j	Download File View File

Structure of crosslinked TM287/288_S498C_S520C mutant

Hohl, M., Schoeppe, J., Gruetter, M.G., Seeger, M.A.

(2014) Proc Natl Acad Sci U S A 111: 11025-11030

Released	2014-07-16
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	ABC transporter (protein) Uncharacterized ABC transporter ATP-binding protein TM_0288 (protein)

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4Q7K \| pdb_00004q7k	Download File View File

Structure of NBD287 of TM287/288

Bukowska, M.A., Hohl, M., Gruetter, M.G., Seeger, M.A.

(2015) Biochemistry 54: 3086-3099

Released	2015-05-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	ABC transporter (protein)

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4Q7L \| pdb_00004q7l	Download File View File

Structure of NBD288 of TM287/288

Bukowska, M.A., Hohl, M., Gruetter, M.G., Seeger, M.A.

(2015) Biochemistry 54: 3086-3099

Released	2015-05-20
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	Uncharacterized ABC transporter ATP-binding protein TM_0288 (protein)
Unique Ligands	NI

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4Q7M \| pdb_00004q7m	Download File View File

Structure of NBD288-Avi of TM287/288

Bukowska, M.A., Hohl, M., Gruetter, M.G., Seeger, M.A.

(2015) Biochemistry 54: 3086-3099

Released	2015-05-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	Uncharacterized ABC transporter ATP-binding protein TM_0288 (protein)

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4U8V \| pdb_00004u8v	Download File View File

Coupling of remote alternating-access transport mechanisms for protons and substrates in the multidrug efflux pump AcrB

Pos, K.M.

(2014) Elife 3:

Released	2014-10-15
Method	X-RAY DIFFRACTION 2.298 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	DARPin (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	LMT, MIY

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4U8Y \| pdb_00004u8y	Download File View File

Coupling of remote alternating-access transport mechanisms for protons and substrates in the multidrug efflux pump AcrB

Pos, K.M.

(2014) Elife 3: e03145

Released	2014-10-15
Method	X-RAY DIFFRACTION 2.099 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPin (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	LMT, MIY

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4U95 \| pdb_00004u95	Download File View File

Coupling of remote alternating-access transport mechanisms for protons and substrates in the multidrug efflux pump AcrB

Pos, K.M.

(2014) Elife 3: e03145

Released	2014-10-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPin (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	LMT, MIY

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4U96 \| pdb_00004u96	Download File View File

Coupling of remote alternating-access transport mechanisms for protons and substrates in the multidrug efflux pump AcrB

Pos, K.M.

(2014) Elife 3: e03145

Released	2014-10-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPin (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	LMT

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5M13 \| pdb_00005m13	Download File View File

Synthetic nanobody in complex with MBP

Zimmermann, I., Egloff, P., Seeger, M.A.

(2018) Elife 7:

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.372 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Maltose-binding periplasmic protein (protein) synthetic Nanobody L2_C06 (a-MBP#2) (protein)
Unique Ligands	EDO

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5M14 \| pdb_00005m14	Download File View File

Synthetic nanobody in complex with MBP

Zimmermann, I., Egloff, P., Seeger, M.A.

(2018) Elife 7:

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Maltose-binding periplasmic protein (protein) synthetic Nanobody L2_G11 (a-MBP#2) (protein)

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5M15 \| pdb_00005m15	Download File View File

Synthetic nanobody in complex with MBP

Zimmermann, I., Egloff, P., Seeger, M.A.

(2018) Elife 7:

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Maltose-binding periplasmic protein (protein) Synthetic nanobody L2_D09, (a-MBP#3) (protein)