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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Shimon, L.J."

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Ruminococcus flavefaciens (4)
	Acetivibrio cellulolyticus (2)
	Allium sativum (2)
	Acetivibrio thermocellus (1)
	Acetivibrio thermocellus YS (1)
	Entamoeba histolytica (1)
	Phage 434 (1)
	Ruminiclostridium cellulolyticum (1)

Taxonomy

	Bacteria (9)
	Eukaryota (3)
	Duplodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (13)

Polymer Entity Type

	Protein (13)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (4)
	2.0 - 2.5 (4)
	2.5 - 3.0 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (1)
	2000 - 2004 (1)
	2005 - 2009 (5)
	2010 - 2014 (5)

Enzyme Classification Name

	Lyases (2)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (9)
	Cyclic (6)
	Dihedral (1)

SCOP Classification

	All beta proteins (5)
	Alpha and beta proteins (a/b) (2)
	All alpha proteins (1)

AllSelected

1 to 13 of 13 Structures

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1ANU \| pdb_00001anu	Download File View File

COHESIN-2 DOMAIN OF THE CELLULOSOME FROM CLOSTRIDIUM THERMOCELLUM

Shimon, L.J.W., Yaron, S., Shoham, Y., Lamed, R., Morag, E., Bayer, E.A., Frolow, F.

(1997) Structure 5: 381-390

Released	1997-07-23
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Acetivibrio thermocellus
Macromolecule	COHESIN-2 (protein)

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1G43 \| pdb_00001g43	Download File View File

CRYSTAL STRUCTURE OF A FAMILY IIIA CBD FROM CLOSTRIDIUM CELLULOLYTICUM

Shimon, L.J.W., Pages, S., Belaich, A., Belaich, J.-P., Bayer, E.A., Lamed, R., Shoham, Y., Frolow, F.

(2000) Acta Crystallogr D Biol Crystallogr 56: 1560-1568

Released	2000-12-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Ruminiclostridium cellulolyticum
Macromolecule	SCAFFOLDING PROTEIN (protein)
Unique Ligands	CA, ZN

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1RPE \| pdb_00001rpe	Download File View File

THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION

Shimon, L.J.W., Harrison, S.C.

(1993) J Mol Biology 232: 826-838

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Phage 434
Macromolecule	PROTEIN (434 REPRESSOR) (protein) DNA (5'-D(APCPAPAPAPCPAPAPGPAPTPAPCPAPTPTPG PTPAPT)-3') (nucleic acid) DNA (5'-D(TPAPTPAPCPAPAPTPGPTPAPTPCPTPTPGPT PTPTPG)-3') (nucleic acid)

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1Y9A \| pdb_00001y9a	Download File View File

Alcohol Dehydrogenase from Entamoeba histolotica in complex with cacodylate

Shimon, L.J., Peretz, M., Goihberg, E., Burstein, Y., Frolow, F.

(2006) Acta Crystallogr D Biol Crystallogr 62: 541-547

Released	2006-01-17
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Entamoeba histolytica
Macromolecule	NADP-dependent alcohol dehydrogenase (protein)
Unique Ligands	ACT, CAC, EDO, MG, ZN

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1ZV9 \| pdb_00001zv9	Download File View File

Crystal structure analysis of a type II cohesin domain from the cellulosome of Acetivibrio cellulolyticus- SeMet derivative

Noach, I., Rosenheck, S., Lamed, R., Shimon, L., Bayer, E., Frolow, F.

(2009) J Mol Biology 391: 86-97

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	Acetivibrio cellulolyticus
Macromolecule	Cellulosomal scaffoldin adaptor protein B (protein)
Unique Ligands	ACY, EDO, FMT, NO3, PDO

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2HOR \| pdb_00002hor	Download File View File

Crystal structure of alliinase from garlic- apo form

Shimon, L.J.W., Rabinkov, A., Wilcheck, M., Mirelman, D., Frolow, F.

(2007) J Mol Biology 366: 611-625

Released	2007-02-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Allium sativum
Macromolecule	Alliin lyase 1 (protein)
Unique Ligands	ACT, CL, NAG, NO3, SO4
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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2HOX \| pdb_00002hox	Download File View File

alliinase from allium sativum (garlic)

Shimon, L.J.W., Rabinkov, A., Wilcheck, M., Mirelman, D., Frolow, F.

(2007) J Mol Biology 366: 611-625

Released	2007-02-06
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Allium sativum
Macromolecule	Alliin lyase 1 (protein)
Unique Ligands	CL, NAG, P1T
Unique branched monosaccharides	BMA, FUC, NAG, XYP

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3BWZ \| pdb_00003bwz	Download File View File

Crystal structure of the type II cohesin module from the cellulosome of Acetivibrio cellulolyticus with an extended linker conformation

Noach, I., Lamed, R., Shimon, L.J.W., Bayer, E., Frolow, F.

(2009) J Mol Biology 391: 86-97

Released	2009-01-13
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Acetivibrio cellulolyticus
Macromolecule	Cellulosomal scaffoldin adaptor protein B (protein)
Unique Ligands	CL, EDO, NO3

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4EYZ \| pdb_00004eyz	Download File View File

Crystal structure of an uncommon cellulosome-related protein module from Ruminococcus flavefaciens that resembles papain-like cysteine peptidases

Frolow, F., Voronov-Goldman, M., Bayer, E., Lamed, R.

(2013) PLoS One 8: e56138-e56138

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.383 Å
Organisms	Ruminococcus flavefaciens
Macromolecule	Cellulosome-related protein module from Ruminococcus flavefaciens that resembles papain-like cysteine peptidases (protein)
Unique Ligands	EDO

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4IU2 \| pdb_00004iu2	Download File View File

Cohesin-dockerin -X domain complex from Ruminococcus flavefacience

Salama-Alber, O., Bayer, E., Frolow, F.

(2013) J Biological Chem 288: 16827-16838

Released	2013-04-24
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Ruminococcus flavefaciens
Macromolecule	Cell-wall anchoring protein (protein) Cellulose-binding protein (protein)
Unique Ligands	CA, CL, SO4

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4IU3 \| pdb_00004iu3	Download File View File

Cohesin-dockerin -X domain complex from Ruminococcus flavefacience

Salama-Alber, O., Bayer, E., Frolow, F.

(2013) J Biological Chem 288: 16827-16838

Released	2013-04-24
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Ruminococcus flavefaciens
Macromolecule	Cell-wall anchoring protein (protein) Cellulose-binding protein (protein)
Unique Ligands	CA, SO4

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4JO5 \| pdb_00004jo5	Download File View File

CBM3a-L domain with flanking linkers from scaffoldin cipA of cellulosome of Clostridium thermocellum

Shimon, L.J.W., Frolow, F., Bayer, E.A., Yaniv, O., Lamed, R., Morag, E.

(2013) Acta Crystallogr Sect F Struct Biol Cryst Commun 69: 733-737

Released	2013-07-17
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Acetivibrio thermocellus YS
Macromolecule	Cellulosome anchoring protein cohesin region (protein)
Unique Ligands	1MZ, CA, CL, GOL, SO4

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4N2O \| pdb_00004n2o	Download File View File

Structure of a novel autonomous cohesin protein from Ruminococcus flavefaciens

Frolow, F., Voronov-Goldman, M., Levy-Assaraf, M., Lamed, R., Bayer, E., Shimon, L.

(2014) Acta Crystallogr Sect F Struct Biol Cryst Commun 70: 450-456

Released	2013-12-18
Method	X-RAY DIFFRACTION 2.442 Å
Organisms	Ruminococcus flavefaciens
Macromolecule	Autonomous cohesin (protein)
Unique Ligands	CL

1 to 13 of 13 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1ANU | pdb_00001anu

COHESIN-2 DOMAIN OF THE CELLULOSOME FROM CLOSTRIDIUM THERMOCELLUM

1G43 | pdb_00001g43

CRYSTAL STRUCTURE OF A FAMILY IIIA CBD FROM CLOSTRIDIUM CELLULOLYTICUM

1RPE | pdb_00001rpe

THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION

1Y9A | pdb_00001y9a

Alcohol Dehydrogenase from Entamoeba histolotica in complex with cacodylate

1ZV9 | pdb_00001zv9

Crystal structure analysis of a type II cohesin domain from the cellulosome of Acetivibrio cellulolyticus- SeMet derivative

2HOR | pdb_00002hor

Crystal structure of alliinase from garlic- apo form

2HOX | pdb_00002hox

alliinase from allium sativum (garlic)

3BWZ | pdb_00003bwz

Crystal structure of the type II cohesin module from the cellulosome of Acetivibrio cellulolyticus with an extended linker conformation

4EYZ | pdb_00004eyz

Crystal structure of an uncommon cellulosome-related protein module from Ruminococcus flavefaciens that resembles papain-like cysteine peptidases

4IU2 | pdb_00004iu2

Cohesin-dockerin -X domain complex from Ruminococcus flavefacience

4IU3 | pdb_00004iu3

Cohesin-dockerin -X domain complex from Ruminococcus flavefacience

4JO5 | pdb_00004jo5

CBM3a-L domain with flanking linkers from scaffoldin cipA of cellulosome of Clostridium thermocellum

4N2O | pdb_00004n2o

Structure of a novel autonomous cohesin protein from Ruminococcus flavefaciens

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ANU | pdb_00001anu

1G43 | pdb_00001g43

1RPE | pdb_00001rpe

1Y9A | pdb_00001y9a

1ZV9 | pdb_00001zv9

2HOR | pdb_00002hor

2HOX | pdb_00002hox

3BWZ | pdb_00003bwz

4EYZ | pdb_00004eyz

4IU2 | pdb_00004iu2

4IU3 | pdb_00004iu3

4JO5 | pdb_00004jo5

4N2O | pdb_00004n2o