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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Simmons, B.A."

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Search Summary

This query matches 25 Structures.

Refinements

Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	Homo sapiens (20)
	Mus musculus (13)
	Microbacterium maritypicum (4)
	Lama glama (3)

Taxonomy

	Eukaryota (21)
	Bacteria (4)

Experimental Method

	ELECTRON MICROSCOPY (19)
	X-RAY DIFFRACTION (6)

Polymer Entity Type

Protein (25)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	2.0 - 2.5 (1)
	2.5 - 3.0 (1)
	3.0 - 3.5 (12)
	3.5 - 4.0 (10)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (4)
	2015 - 2019 (10)
	2020 - 2024 (10)

Enzyme Classification Name

	Translocases (19)
	Hydrolases (1)

Membrane Protein Annotation

	PDBTM (23)
	MemProtMD (21)
	mpstruc (15)
	OPM (14)

Symmetry Type

	Cyclic (17)
	Asymmetric (8)

SCOP Classification

	All beta proteins (4)
	Artifacts (3)
	Alpha and beta proteins (a/b) (1)
	Small proteins (1)

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1 to 25 of 25 Structures

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3H42 \| pdb_00003h42	Download File View File

Crystal structure of PCSK9 in complex with Fab from LDLR competitive antibody

Piper, D.E., Walker, N.P.C., Romanow, W.G., Thibault, S.T., Tsai, M.M., Yang, E.

(2009) Proc Natl Acad Sci U S A 106: 9820-9825

Released	2009-05-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Fab from LDLR competitive antibody: Heavy chain (protein) Fab from LDLR competitive antibody: Light chain (protein) Proprotein convertase subtilisin/kexin type 9 (protein)
Unique Ligands	NA

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4D1A \| pdb_00004d1a	Download File View File

STRUCTURE OF MHP1, A NUCLEOBASE-CATION-SYMPORT-1 FAMILY TRANSPORTER, IN A CLOSED CONFORMATION WITH INDOLYLMETHYL-HYDANTOIN

Weyand, S., Brueckner, F., Geng, T., Drew, D., Iwata, S., Henderson, P.J.F., Cameron, A.D.

(2014) EMBO J 33: 1831

Released	2014-07-02
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Microbacterium maritypicum
Macromolecule	HYDANTOIN TRANSPORT PROTEIN (protein)
Unique Ligands	I5H, NA

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4D1B \| pdb_00004d1b	Download File View File

STRUCTURE OF MHP1, A NUCLEOBASE-CATION-SYMPORT-1 FAMILY TRANSPORTER, IN A CLOSED CONFORMATION WITH BENZYL-HYDANTOIN

Brueckner, F., Geng, T., Weyand, S., Drew, D., Iwata, S., Henderson, P.J.F., Cameron, A.D.

(2014) EMBO J 33: 1831

Released	2014-07-02
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Microbacterium maritypicum
Macromolecule	HYDANTOIN TRANSPORT PROTEIN (protein)
Unique Ligands	5FH, NA

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4D1C \| pdb_00004d1c	Download File View File

STRUCTURE OF MHP1, A NUCLEOBASE-CATION-SYMPORT-1 FAMILY TRANSPORTER, IN A CLOSED CONFORMATION WITH bromovinylhydantoin bound.

Weyand, S., Brueckner, F., Geng, T., Drew, D., Iwata, S., Henderson, P.J.F., Cameron, A.D.

(2014) EMBO J 33: 1831

Released	2014-07-02
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Microbacterium maritypicum
Macromolecule	HYDANTOIN TRANSPORT PROTEIN (protein)
Unique Ligands	B5H, NA

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4D1D \| pdb_00004d1d	Download File View File

STRUCTURE OF MHP1, A NUCLEOBASE-CATION-SYMPORT-1 FAMILY TRANSPORTER with the inhibitor 5-(2-naphthylmethyl)-L-hydantoin.

Weyand, S., Brueckner, F., Geng, T., Drew, D., Iwata, S., Henderson, P.J.F., Cameron, A.D.

(2014) EMBO J 33: 1831

Released	2014-07-02
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Microbacterium maritypicum
Macromolecule	HYDANTOIN TRANSPORT PROTEIN (protein)
Unique Ligands	5ND, 5NL, NA

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5NIV \| pdb_00005niv	Download File View File

Crystal structure of 5D3 Fab

Manolaridis, I., Locher, K.P.

(2017) Nature 546: 504-509

Released	2017-06-07
Method	X-RAY DIFFRACTION 1.498 Å
Organisms	Mus musculus
Macromolecule	Heavy chain of 5D3 Fab (protein) Light chain of 5D3 Fab (protein)

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5NJ3 \| pdb_00005nj3	Download File View File

Structure of an ABC transporter: complete structure

Taylor, N.M.I., Manolaridis, I., Jackson, S.M., Kowal, J., Stahlberg, H., Locher, K.P.

(2017) Nature 546: 504-509

Released	2017-06-07
Method	ELECTRON MICROSCOPY 3.78 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	5D3-Fab heavy chain (protein) 5D3-Fab light chain (protein) ATP-binding cassette sub-family G member 2 (protein)
Unique branched monosaccharides	NAG

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5NJG \| pdb_00005njg	Download File View File

Structure of an ABC transporter: part of the structure that could be built de novo

Taylor, N.M.I., Manolaridis, I., Jackson, S.M., Kowal, J., Stahlberg, H., Locher, K.P.

(2017) Nature 546: 504-509

Released	2017-06-07
Method	ELECTRON MICROSCOPY 3.78 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	5D3-Fab heavy chain (protein) 5D3-Fab light chain (protein) ATP-binding cassette sub-family G member 2 (protein)
Unique branched monosaccharides	NAG

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6ETI \| pdb_00006eti	Download File View File

Structure of inhibitor-bound ABCG2

Jackson, S.M., Manolaridis, I., Kowal, J., Zechner, M., Altmann, K.H., Locher, K.P.

(2018) Nat Struct Mol Biol 25: 333-340

Released	2018-04-11
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	5D3(Fab) heavy chain variable domain (protein) 5D3(Fab) light chain variable domain (protein) ATP-binding cassette sub-family G member 2 (protein)
Unique Ligands	BWQ
Unique branched monosaccharides	NAG

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6FEQ \| pdb_00006feq	Download File View File

Structure of inhibitor-bound ABCG2

Jackson, S.M., Manolaridis, I., Kowal, J., Zechner, M., Altmann, K.H., Locher, K.P.

(2018) Nat Struct Mol Biol 25: 333-340

Released	2018-04-11
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	5D3(Fab) heavy chain variable domain (protein) 5D3(Fab) light chain variable domain (protein) ATP-binding cassette sub-family G member 2 (protein)
Unique Ligands	D6T, NAG

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6FFC \| pdb_00006ffc	Download File View File

Structure of an inhibitor-bound ABC transporter

Jackson, S.M., Manolaridis, I., Kowal, J., Zechner, M., Taylor, N.M.I., Bause, M., Bauer, S., Bartholomaeus, R., Stahlberg, H., Bernhardt, G., Koenig, B., Buschauer, A., Altmann, K.H., Locher, K.P.

(2018) Nat Struct Mol Biol 25: 333-340

Released	2018-04-11
Method	ELECTRON MICROSCOPY 3.56 Å
Organisms	Homo sapiens
Macromolecule	ATP-binding cassette sub-family G member 2 (protein)
Unique Ligands	BWQ

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6HBU \| pdb_00006hbu	Download File View File

Cryo-EM structure of the ABCG2 E211Q mutant bound to ATP and Magnesium

Manolaridis, I., Jackson, S.M., Taylor, N.M.I., Kowal, J., Stahlberg, H., Locher, K.P.

(2018) Nature 563: 426-430

Released	2018-11-07
Method	ELECTRON MICROSCOPY 3.09 Å
Organisms	Homo sapiens
Macromolecule	ATP-binding cassette sub-family G member 2 (protein)
Unique Ligands	ATP, MG

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6HCO \| pdb_00006hco	Download File View File

Cryo-EM structure of the ABCG2 E211Q mutant bound to estrone 3-sulfate and 5D3-Fab

Manolaridis, I., Jackson, S.M., Taylor, N.M.I., Kowal, J., Stahlberg, H., Locher, K.P.

(2018) Nature 563: 426-430

Released	2018-11-07
Method	ELECTRON MICROSCOPY 3.58 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	5D3-Fab heavy chain (protein) 5D3-Fab light chain (protein) ATP-binding cassette sub-family G member 2 (protein)
Unique Ligands	FY5
Unique branched monosaccharides	NAG

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6HIJ \| pdb_00006hij	Download File View File

Cryo-EM structure of the human ABCG2-MZ29-Fab complex with cholesterol and PE lipids docked

Jackson, S.M., Manolaridis, I., Kowal, J., Zechner, M., Taylor, N.M.I., Bause, M., Bauer, S., Bartholomaeus, R., Stahlberg, H., Bernhardt, G., Koenig, B., Buschauer, A., Altmann, K.H., Locher, K.P.

(2018) Nat Struct Mol Biol 25: 333-340

Released	2018-09-19
Method	ELECTRON MICROSCOPY 3.56 Å
Organisms	Homo sapiens
Macromolecule	ATP-binding cassette sub-family G member 2 (protein)
Unique Ligands	BWQ, CLR, PEE

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6HZM \| pdb_00006hzm	Download File View File

Cryo-EM structure of the ABCG2 E211Q mutant bound to ATP and Magnesium (alternative placement of Magnesium into the cryo-EM density)

Manolaridis, I., Jackson, S.M., Taylor, N.M.I., Kowal, J., Stahlberg, H., Locher, K.P.

(2018) Nature 563: 426-430

Released	2018-11-14
Method	ELECTRON MICROSCOPY 3.09 Å
Organisms	Homo sapiens
Macromolecule	ATP-binding cassette sub-family G member 2 (protein)
Unique Ligands	ATP, MG

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7NEQ \| pdb_00007neq	Download File View File

Structure of tariquidar-bound ABCG2

Kowal, J., Locher, K.

(2021) J Mol Biology 433: 166980-166980

Released	2021-04-21
Method	ELECTRON MICROSCOPY 3.12 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	5D3(Fab) heavy chain variable domain (protein) 5D3(Fab) light chain variable domain (protein) ATP-binding cassette sub-family G member 2 (protein)
Unique Ligands	CLR, NAG, R1H, U9N

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7NEZ \| pdb_00007nez	Download File View File

Structure of topotecan-bound ABCG2

Kowal, J., Locher, K., Ni, D., Stahlberg, H.

(2021) J Mol Biology 433: 166980-166980

Released	2021-04-21
Method	ELECTRON MICROSCOPY 3.39 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	5D3(Fab) heavy chain variable domain (protein) 5D3(Fab) light chain variable domain (protein) ATP-binding cassette sub-family G member 2 (protein)
Unique Ligands	NAG, TTC

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7NFD \| pdb_00007nfd	Download File View File

Structure of mitoxantrone-bound ABCG2

Kowal, J., Locher, K., Ni, D., Stahlberg, H.

(2021) J Mol Biology 433: 166980-166980

Released	2021-04-21
Method	ELECTRON MICROSCOPY 3.51 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	5D3(Fab) heavy chain variable domain (protein) 5D3(Fab) light chain variable domain (protein) ATP-binding cassette sub-family G member 2 (protein)
Unique Ligands	MIX
Unique branched monosaccharides	NAG

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7OJ8 \| pdb_00007oj8	Download File View File

ABCG2 E1S turnover-2 state

Ni, D., Yu, Q., Kowal, J., Manolaridis, I., Jackson, S.M., Stahlberg, H., Locher, K.P.

(2021) Nat Commun 12: 4376-4376

Released	2021-07-21
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Broad substrate specificity ATP-binding cassette transporter ABCG2 (protein)
Unique Ligands	ATP, CLR, FY5

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7OJH \| pdb_00007ojh	Download File View File

ABCG2 topotecan turnover-1 state

Yu, Q., Ni, D., Kowal, J., Manolaridis, I., Jackson, S.M., Stahlberg, H., Locher, K.P.

(2021) Nat Commun 12: 4376-4376

Released	2021-07-21
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Broad substrate specificity ATP-binding cassette transporter ABCG2 (protein)
Unique Ligands	ATP, CLR, TTC

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7OJI \| pdb_00007oji	Download File View File

ABCG2 topotecan turnover-2 state

Yu, Q., Ni, D., Kowal, J., Manolaridis, I., Jackson, S.M., Stahlberg, H., Locher, K.P.

(2021) Nat Commun 12: 4376-4376

Released	2021-07-21
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Broad substrate specificity ATP-binding cassette transporter ABCG2 (protein)
Unique Ligands	ATP, CLR, PLC, TTC

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8P7W \| pdb_00008p7w	Download File View File

Structure of 5D3-Fab and nanobody(Nb8)-bound ABCG2

Irobalieva, R.N., Manolaridis, I., Jackson, S.M., Ni, D., Pardon, E., Stahlberg, H., Steyaert, J., Locher, K.P.

(2023) J Mol Biology 435: 168234-168234

Released	2023-08-30
Method	ELECTRON MICROSCOPY 3.04 Å
Organisms	Homo sapiens Lama glama Mus musculus
Macromolecule	5D3(Fab) heavy chain variable domain (protein) 5D3(Fab) light chain variable domain (protein) ATP-binding cassette sub-family G member 2 (protein) Nanobody (protein)

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8P8A \| pdb_00008p8a	Download File View File

Structure of 5D3-Fab and nanobody(Nb17)-bound ABCG2

Irobalieva, R.N., Manolaridis, I., Jackson, S.M., Ni, D., Pardon, E., Stahlberg, H., Steyaert, J., Locher, K.P.

(2023) J Mol Biology 435: 168234-168234

Released	2023-08-30
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens Lama glama Mus musculus
Macromolecule	5D3(Fab) heavy chain variable domain (protein) 5D3(Fab) light chain variable domain (protein) ATP-binding cassette sub-family G member 2 (protein) Nanobody (protein)
Unique branched monosaccharides	NAG

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8P8J \| pdb_00008p8j	Download File View File

Structure of 5D3-Fab and nanobody(Nb96)-bound ABCG2

Irobalieva, R.N., Manolaridis, I., Jackson, S.M., Ni, D., Pardon, E., Stahlberg, H., Steyaert, J., Locher, K.P.

(2023) J Mol Biology 435: 168234-168234

Released	2023-08-30
Method	ELECTRON MICROSCOPY 3.49 Å
Organisms	Homo sapiens Lama glama Mus musculus
Macromolecule	5D3(Fab) heavy chain variable domain (protein) 5D3(Fab) light chain variable domain (protein) ATP-binding cassette sub-family G member 2 (protein) Nanobody (protein)
Unique Ligands	NAG

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8Q7B \| pdb_00008q7b	Download File View File

ABCG2 in complex with MZ29 and 5D3 Fab

Kowal, J., Yu, Q., Ni, D., Stahlberg, H., Tajkhorshid, E., Altmann, K.H., Locher, K.P., Manolaridis, I., Jackson, S.M., Taylor, N.M.I., Zechner, M.

(2024) ACS Chem Biol 19: 2304-2313

Released	2024-11-06
Method	ELECTRON MICROSCOPY 2.56 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	5D3(Fab) heavy chain variable domain (protein) 5D3(Fab) light chain variable domain (protein) ATP-binding cassette sub-family G member 2 (protein)
Unique Ligands	BWQ, CLR
Unique branched monosaccharides	NAG

1 to 25 of 25 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3H42 | pdb_00003h42

4D1A | pdb_00004d1a

4D1B | pdb_00004d1b

4D1C | pdb_00004d1c

4D1D | pdb_00004d1d

5NIV | pdb_00005niv

5NJ3 | pdb_00005nj3

5NJG | pdb_00005njg

6ETI | pdb_00006eti

6FEQ | pdb_00006feq

6FFC | pdb_00006ffc

6HBU | pdb_00006hbu

6HCO | pdb_00006hco

6HIJ | pdb_00006hij

6HZM | pdb_00006hzm

7NEQ | pdb_00007neq

7NEZ | pdb_00007nez

7NFD | pdb_00007nfd

7OJ8 | pdb_00007oj8

7OJH | pdb_00007ojh

7OJI | pdb_00007oji

8P7W | pdb_00008p7w

8P8A | pdb_00008p8a

8P8J | pdb_00008p8j

8Q7B | pdb_00008q7b