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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Smith, N.L."

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Bacteroides thetaiotaomicron VPI-5482 (7)
	Acetivibrio thermocellus (6)
	Streptococcus pyogenes (3)
	Bacteroides thetaiotaomicron (2)
	Severe acute respiratory syndrome coronavirus 2 (2)
	Streptomyces coelicolor A3(2) (2)
	Vicugna pacos (2)
	Streptomyces violaceoruber (1)
	Tequatrovirus T4 (1)

Taxonomy

	Bacteria (21)
	Eukaryota (2)
	Riboviria (2)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (21)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (23)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (11)
	2.0 - 2.5 (6)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (17)
	2010 - 2014 (3)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (16)
	Lyases (4)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (18)
	Cyclic (3)
	Dihedral (2)

SCOP Classification

	All beta proteins (13)
	Alpha and beta proteins (a/b) (14)
	Artifacts (9)

AllSelected

1 to 23 of 23 Structures

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1GMM \| pdb_00001gmm	Download File View File

Carbohydrate binding module CBM6 from xylanase U Clostridium thermocellum

Czjzek, M., Mosbah, A., Bolam, D., Allouch, J., Zamboni, V., Henrissat, B., Gilbert, H.J.

(2001) J Biological Chem 276: 48580

Released	2001-11-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Acetivibrio thermocellus
Macromolecule	CBM6 (protein)
Unique Ligands	CA, NA, SO4

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2C3F \| pdb_00002c3f	Download File View File

The structure of a group A streptococcal phage-encoded tail-fibre showing hyaluronan lyase activity.

Taylor, E.J., Smith, N.L., Linsay, A.-M., Charnock, S.J., Turkenburg, J.P., Dodson, E.J., Davies, G.J., Black, G.W.

(2005) Proc Natl Acad Sci U S A 102: 17652

Released	2005-11-29
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Streptococcus pyogenes
Macromolecule	HYALURONIDASE, PHAGE ASSOCIATED (protein)
Unique Ligands	NA

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2C7F \| pdb_00002c7f	Download File View File

The Structure of a family 51 arabinofuranosidase, Araf51, from Clostridium thermocellum in complex with 1,5-alpha-L-Arabinotriose.

Taylor, E.J., Smith, N.L., Turkenburg, J.P., D'Souza, S., Gilbert, H.J., Davies, G.J.

(2006) Biochem J 395: 31

Released	2005-12-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ALPHA-L-ARABINOFURANOSIDASE (protein)
Unique Ligands	EDO
Unique branched monosaccharides	AHR

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2C8N \| pdb_00002c8n	Download File View File

The Structure of a family 51 arabinofuranosidase, Araf51, from Clostridium thermocellum in complex with 1,3-linked arabinoside of xylobiose.

Taylor, E.J., Smith, N.L., Turkenburg, J.P., D'Souza, S., Gilbert, H.J., Davies, G.J.

(2006) Biochem J 395: 31

Released	2005-12-14
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ALPHA-L-ARABINOFURANOSIDASE (protein)
Unique Ligands	EDO
Unique branched monosaccharides	AHR, XYS

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2CIP \| pdb_00002cip	Download File View File

Structure of the Michaelis complex of a family 26 lichenase

Money, V.A., Smith, N.L., Scaffidi, A., Stick, R.V., Gilbert, H.J., Davies, G.J.

(2006) Angew Chem Int Ed Engl 45: 5136

Released	2006-07-12
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDOGLUCANASE H (protein)
Unique Ligands	ZZ1
Unique branched monosaccharides	BGC

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2CIT \| pdb_00002cit	Download File View File

Structure of the covalent intermediate of a family 26 lichenase

Money, V.A., Smith, N.L., Scaffidi, A., Stick, R.V., Gilbert, H.J., Davies, G.J.

(2006) Angew Chem Int Ed Engl 45: 5136

Released	2006-04-10
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDOGLUCANASE H (protein)
Unique branched monosaccharides	BGC, G2F

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2JE8 \| pdb_00002je8	Download File View File

Structure of a beta-mannosidase from Bacteroides thetaiotaomicron

Tailford, L.E., Money, V.A., Smith, N.L., Dumon, C., Davies, G.J., Gilbert, H.J.

(2007) J Biological Chem 282: 11291

Released	2007-02-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	BETA-MANNOSIDASE (protein)
Unique Ligands	B3P, CL, GOL

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2VI0 \| pdb_00002vi0	Download File View File

Lichenase CtLic26 in complex with a thio-oligosaccharide

Money, V.A., Ducros, V.M., Davies, G.J.

(2008) Org Biomol Chem 6: 851-853

Released	2009-03-10
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Acetivibrio thermocellus
Macromolecule	Endoglucanase H (protein)
Unique branched monosaccharides	BGC, MGL, SGC

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2VJX \| pdb_00002vjx	Download File View File

Structural and biochemical evidence for a boat-like transition state in beta-mannosidases

Tailford, L.E., Offen, W.A., Smith, N.L., Dumon, C., Moreland, C., Gratien, J., Heck, M.P., Stick, R.V., Bleriot, Y., Vasella, A., Gilbert, H.J., Davies, G.J.

(2008) Nat Chem Biol 4: 306

Released	2008-04-01
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	BETA-MANNOSIDASE (protein)
Unique Ligands	BR, CL, EDO, IFL

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2VL4 \| pdb_00002vl4	Download File View File

Structural and biochemical evidence for a boat-like transition state in beta-mannosidases

Tailford, L.E., Offen, W.A., Smith, N.L., Dumon, C., Moreland, C., Gratien, J., Heck, M.P., Stick, R.V., Bleriot, Y., Vasella, A., Gilbert, H.J., Davies, G.J.

(2008) Nat Chem Biol 4: 306

Released	2008-04-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	BETA-MANNOSIDASE (protein)
Unique Ligands	BR, CL, EDO, MNM

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2VMF \| pdb_00002vmf	Download File View File

Structural and biochemical evidence for a boat-like transition state in beta-mannosidases

Tailford, L.E., Offen, W.A., Smith, N.L., Dumon, C., Moreland, C., Gratien, J., Heck, M.P., Stick, R.V., Bleriot, Y., Vasella, A., Gilbert, H.J., Davies, G.J.

(2008) Nat Chem Biol 4: 306

Released	2008-04-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	BETA-MANNOSIDASE (protein)
Unique Ligands	BR, CL, EDO, MVL

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2VO5 \| pdb_00002vo5	Download File View File

Structural and biochemical evidence for a boat-like transition state in beta-mannosidases

Tailford, L.E., Offen, W.A., Smith, N.L., Dumon, C., Moreland, C., Gratien, J., Heck, M.P., Stick, R.V., Bleriot, Y., Vasella, A., Gilbert, H.J., Davies, G.J.

(2008) Nat Chem Biol 4: 306

Released	2008-04-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	BETA-MANNOSIDASE (protein)
Unique Ligands	BR, CL, EDO, VBZ

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2VOT \| pdb_00002vot	Download File View File

Structural and biochemical evidence for a boat-like transition state in beta-mannosidases

Tailford, L.N., Offen, W.A., Smith, N., Dumon, C., Moreland, C., Gratien, J., Heck, M.-P., Stick, R.V., Bleriot, Y., Vasella, A., Gilbert, H.J., Davies, G.J.

(2008) Nat Chem Biol 4: 306

Released	2008-04-01
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	BETA-MANNOSIDASE (protein)
Unique Ligands	BR, CL, EDO, NHV

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2VQT \| pdb_00002vqt	Download File View File

Structural and biochemical evidence for a boat-like transition state in beta-mannosidases

Tailford, L.E., Offen, W.A., Smith, N.L., Dumon, C., Moreland, C., Gratien, J., Heck, M.P., Stick, R.V., Bleriot, Y., Vasella, A., Gilbert, H.J., Davies, G.J.

(2008) Nat Chem Biol 4: 306

Released	2008-04-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	BETA-MANNOSIDASE (protein)
Unique Ligands	15A, BR, CL, EDO

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2VQU \| pdb_00002vqu	Download File View File

Structural and biochemical evidence for a boat-like transition state in beta-mannosidases

Tailford, L.E., Offen, W.A., Smith, N.L., Dumon, C., Moreland, C., Gratien, J., Heck, M.P., Stick, R.V., Bleriot, Y., Vasella, A., Gilbert, H.J., Davies, G.J.

(2008) Nat Chem Biol 4: 306

Released	2008-04-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	BETA-MANNOSIDASE (protein)
Unique Ligands	BR, CL, EDO, NOY

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2VR4 \| pdb_00002vr4	Download File View File

Transition-state mimicry in mannoside hydrolysis: characterisation of twenty six inhibitors and insight into binding from linear free energy relationships and 3-D structure

Tailford, L.E., Offen, W.A., Smith, N.L., Dumon, C., Moreland, C., Gratien, J., Heck, M.P., Stick, R.V., Bleriot, Y., Vasella, A., Gilbert, H.J., Davies, G.J.

(2008) Nat Chem Biol 4: 306

Released	2008-04-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	BETA-MANNOSIDASE (protein)
Unique Ligands	17B, BR, CL, EDO

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2WB3 \| pdb_00002wb3	Download File View File

The partial structure of a group A streptococcal phage-encoded tail fibre hyaluronate lyase Hylp3

Martinez-Fleites, C., Black, G.W., Turkenburg, J.P., Smith, N.L., Taylor, E.J.

(2009) Acta Crystallogr Sect F Struct Biol Cryst Commun 65: 963

Released	2009-09-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptococcus pyogenes
Macromolecule	HYALURONIDASE-PHAGE ASSOCIATED (protein)

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2WCO \| pdb_00002wco	Download File View File

Structures of the Streptomyces coelicolor A3(2) Hyaluronan Lyase in Complex with Oligosaccharide Substrates and an Inhibitor

Elmabrouk, Z.H., Taylor, E.J., Vincent, F., Smith, N.L., Zhang, M., Charnock, S.J., Turkenburg, J.P., Davies, G.J., Black, G.W.

(2011) Proteins 79: 965

Released	2010-08-18
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	PUTATIVE SECRETED LYASE (protein)
Unique Ligands	FMT, GOL
Unique branched monosaccharides	GC4, NAG

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2WDA \| pdb_00002wda	Download File View File

The X-ray structure of the Streptomyces coelicolor A3 Chondroitin AC Lyase in Complex with Chondroitin sulphate

Elmabrouk, Z.H., Taylor, E.J., Vincent, F., Smith, N.L., Turkenburg, J.P., Davies, G.J., Black, G.W.

(2011) Proteins 79: 965

Released	2010-04-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Streptomyces violaceoruber
Macromolecule	PUTATIVE SECRETED LYASE (protein)
Unique Ligands	FMT, GOL, MG, PEG
Unique branched monosaccharides	ASG, GCD

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2WH7 \| pdb_00002wh7	Download File View File

The partial structure of a group A streptpcoccal phage-encoded tail fibre hyaluronate lyase Hylp2

Martinez-Fleites, C., Black, G.W., Turkenburg, J.P., Smith, N.L., Taylor, E.J.

(2009) Acta Crystallogr Sect F Struct Biol Cryst Commun 65: 963

Released	2009-09-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptococcus pyogenes
Macromolecule	HYALURONIDASE-PHAGE ASSOCIATED (protein)

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2X03 \| pdb_00002x03	Download File View File

The X-ray structure of the Streptomyces coelicolor A3 Chondroitin AC Lyase Y253A mutant

Elmabrouk, Z.H., Taylor, E.J., Vincent, F., Smith, N.L., Turkenburg, J.P., Davies, G.J., Black, G.W.

(2011) Proteins 79: 965

Released	2010-08-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	PUTATIVE SECRETED LYASE (protein)
Unique Ligands	MG

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7NLL \| pdb_00007nll	Download File View File

SARS-CoV-2 Spike RBD (dimer) in complex with two Fu2 nanobodies

Das, H., Hallberg, B.M.

(2022) Nat Commun 13: 155-155

Released	2022-02-02
Method	ELECTRON MICROSCOPY 2.89 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 Vicugna pacos
Macromolecule	Nanobody Fu2 (protein) Spike protein S1 (protein)
Unique Ligands	NAG

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7NS6 \| pdb_00007ns6	Download File View File

SARS-CoV-2 Spike (dimers) in complex with six Fu2 nanobodies

Das, H., Hallberg, B.M.

(2022) Nat Commun 13: 155-155

Released	2022-02-02
Method	ELECTRON MICROSCOPY 3.18 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 Tequatrovirus T4 Vicugna pacos
Macromolecule	Fu2 nanobody (protein) Spike glycoprotein,Fibritin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

1 to 23 of 23 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1GMM | pdb_00001gmm

2C3F | pdb_00002c3f

2C7F | pdb_00002c7f

2C8N | pdb_00002c8n

2CIP | pdb_00002cip

2CIT | pdb_00002cit

2JE8 | pdb_00002je8

2VI0 | pdb_00002vi0

2VJX | pdb_00002vjx

2VL4 | pdb_00002vl4

2VMF | pdb_00002vmf

2VO5 | pdb_00002vo5

2VOT | pdb_00002vot

2VQT | pdb_00002vqt

2VQU | pdb_00002vqu

2VR4 | pdb_00002vr4

2WB3 | pdb_00002wb3

2WCO | pdb_00002wco

2WDA | pdb_00002wda

2WH7 | pdb_00002wh7

2X03 | pdb_00002x03

7NLL | pdb_00007nll

7NS6 | pdb_00007ns6